Iron in PDB 4blc: The Structure of Orthorhombic Crystals of Beef Liver Catalase

All present enzymatic activity of The Structure of Orthorhombic Crystals of Beef Liver Catalase:
1.11.1.6;

The structure of The Structure of Orthorhombic Crystals of Beef Liver Catalase, PDB code: 4blc was solved by T.P.Ko, J.Day, A.Malkin, A.Mcpherson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	87.800, 140.600, 232.400, 90.00, 90.00, 90.00
R / Rfree (%)	20.5 / 27.3

The binding sites of Iron atom in the The Structure of Orthorhombic Crystals of Beef Liver Catalase (pdb code 4blc). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the The Structure of Orthorhombic Crystals of Beef Liver Catalase, PDB code: 4blc:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the The Structure of Orthorhombic Crystals of Beef Liver Catalase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Structure of Orthorhombic Crystals of Beef Liver Catalase within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe507 b:30.2 occ:1.00 FE A:HEM507 0.0 30.2 1.0 ND A:HEM507 1.9 29.2 1.0 NC A:HEM507 2.0 32.3 1.0 NA A:HEM507 2.0 29.0 1.0 OH A:TYR357 2.0 21.4 1.0 NB A:HEM507 2.0 32.6 1.0 C4D A:HEM507 3.0 30.4 1.0 C1A A:HEM507 3.0 28.4 1.0 C1D A:HEM507 3.0 30.1 1.0 C4C A:HEM507 3.0 34.0 1.0 C1C A:HEM507 3.0 31.4 1.0 C4B A:HEM507 3.1 32.7 1.0 C4A A:HEM507 3.1 28.9 1.0 CZ A:TYR357 3.1 25.8 1.0 C1B A:HEM507 3.1 30.9 1.0 CHA A:HEM507 3.4 30.4 1.0 CHD A:HEM507 3.4 33.0 1.0 CHC A:HEM507 3.4 31.8 1.0 CHB A:HEM507 3.5 29.9 1.0 CE2 A:TYR357 3.8 26.0 1.0 CE1 A:TYR357 4.0 26.5 1.0 C2D A:HEM507 4.2 28.4 1.0 C3D A:HEM507 4.2 30.3 1.0 C2A A:HEM507 4.2 27.2 1.0 NH2 A:ARG353 4.3 33.6 1.0 C3C A:HEM507 4.3 34.1 1.0 C2C A:HEM507 4.3 32.3 1.0 NE A:ARG353 4.3 32.1 1.0 C3A A:HEM507 4.3 27.5 1.0 C3B A:HEM507 4.3 34.5 1.0 C2B A:HEM507 4.3 31.8 1.0 CZ A:PHE160 4.5 26.5 1.0 NE2 A:HIS74 4.6 25.7 1.0 CZ A:ARG353 4.7 32.0 1.0 CD2 A:HIS74 4.8 23.7 1.0 CG2 A:VAL73 4.8 28.1 1.0

Iron binding site 2 out of 4 in the The Structure of Orthorhombic Crystals of Beef Liver Catalase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Structure of Orthorhombic Crystals of Beef Liver Catalase within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe507 b:39.1 occ:1.00 FE B:HEM507 0.0 39.1 1.0 NC B:HEM507 1.9 42.4 1.0 ND B:HEM507 2.0 39.5 1.0 OH B:TYR357 2.0 35.5 1.0 NB B:HEM507 2.0 38.5 1.0 NA B:HEM507 2.0 39.2 1.0 C4C B:HEM507 3.0 42.2 1.0 C1C B:HEM507 3.0 43.0 1.0 C1D B:HEM507 3.0 39.9 1.0 C4B B:HEM507 3.0 40.0 1.0 C4D B:HEM507 3.0 39.0 1.0 C1B B:HEM507 3.0 38.6 1.0 C4A B:HEM507 3.1 38.4 1.0 C1A B:HEM507 3.1 37.8 1.0 CZ B:TYR357 3.1 36.5 1.0 CHD B:HEM507 3.4 40.3 1.0 CHC B:HEM507 3.4 42.2 1.0 CHA B:HEM507 3.4 39.0 1.0 CHB B:HEM507 3.4 37.9 1.0 CE2 B:TYR357 3.8 36.0 1.0 CE1 B:TYR357 4.0 36.1 1.0 NE B:ARG353 4.1 39.6 1.0 NH2 B:ARG353 4.2 40.8 1.0 C3C B:HEM507 4.2 45.1 1.0 C2C B:HEM507 4.2 44.2 1.0 C2D B:HEM507 4.2 39.6 1.0 C3D B:HEM507 4.3 38.4 1.0 C3A B:HEM507 4.3 37.9 1.0 C2B B:HEM507 4.3 39.6 1.0 C3B B:HEM507 4.3 40.7 1.0 C2A B:HEM507 4.3 38.0 1.0 CZ B:PHE160 4.4 25.7 1.0 NE2 B:HIS74 4.6 52.4 1.0 CZ B:ARG353 4.6 41.4 1.0 CD2 B:HIS74 4.8 49.5 1.0 CE1 B:PHE160 4.8 25.3 1.0

Iron binding site 3 out of 4 in the The Structure of Orthorhombic Crystals of Beef Liver Catalase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Structure of Orthorhombic Crystals of Beef Liver Catalase within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe507 b:46.2 occ:1.00 FE C:HEM507 0.0 46.2 1.0 ND C:HEM507 2.0 49.4 1.0 NA C:HEM507 2.0 47.9 1.0 NB C:HEM507 2.0 51.3 1.0 OH C:TYR357 2.0 38.8 1.0 NC C:HEM507 2.0 54.5 1.0 C4D C:HEM507 3.0 48.5 1.0 C4A C:HEM507 3.0 46.2 1.0 C1B C:HEM507 3.0 50.8 1.0 C1A C:HEM507 3.0 45.8 1.0 C1D C:HEM507 3.0 51.4 1.0 C4B C:HEM507 3.1 52.3 1.0 C4C C:HEM507 3.1 54.8 1.0 C1C C:HEM507 3.1 53.9 1.0 CZ C:TYR357 3.2 40.4 1.0 CHB C:HEM507 3.4 48.3 1.0 CHA C:HEM507 3.4 46.9 1.0 CHD C:HEM507 3.5 53.0 1.0 CHC C:HEM507 3.5 52.6 1.0 NH2 C:ARG353 3.8 45.9 1.0 CE2 C:TYR357 4.0 41.0 1.0 NE C:ARG353 4.0 46.3 1.0 CE1 C:TYR357 4.1 41.3 1.0 C3A C:HEM507 4.2 44.4 1.0 C2D C:HEM507 4.3 51.2 1.0 C2A C:HEM507 4.3 43.5 1.0 C3D C:HEM507 4.3 49.8 1.0 C2B C:HEM507 4.3 52.0 1.0 CZ C:ARG353 4.3 45.2 1.0 C3B C:HEM507 4.3 52.7 1.0 C3C C:HEM507 4.3 56.7 1.0 C2C C:HEM507 4.3 55.5 1.0 NE2 C:HIS74 4.7 37.5 1.0 CZ C:PHE160 4.7 50.0 1.0 CD2 C:HIS74 5.0 38.0 1.0

Iron binding site 4 out of 4 in the The Structure of Orthorhombic Crystals of Beef Liver Catalase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The Structure of Orthorhombic Crystals of Beef Liver Catalase within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe507 b:46.5 occ:1.00 FE D:HEM507 0.0 46.5 1.0 NC D:HEM507 1.9 48.0 1.0 ND D:HEM507 2.0 44.8 1.0 NB D:HEM507 2.0 47.4 1.0 NA D:HEM507 2.0 46.5 1.0 OH D:TYR357 2.1 33.2 1.0 C1C D:HEM507 3.0 48.8 1.0 C4C D:HEM507 3.0 47.4 1.0 C1D D:HEM507 3.0 44.2 1.0 C4D D:HEM507 3.1 43.4 1.0 C4B D:HEM507 3.1 48.6 1.0 C1B D:HEM507 3.1 48.1 1.0 C1A D:HEM507 3.1 44.2 1.0 C4A D:HEM507 3.1 46.2 1.0 CZ D:TYR357 3.3 34.2 1.0 CHD D:HEM507 3.4 46.0 1.0 CHC D:HEM507 3.4 49.4 1.0 CHA D:HEM507 3.5 43.8 1.0 CHB D:HEM507 3.5 47.1 1.0 CE1 D:TYR357 4.1 33.5 1.0 CZ D:PHE160 4.2 42.7 1.0 CE2 D:TYR357 4.2 34.2 1.0 C2C D:HEM507 4.2 47.6 1.0 C3C D:HEM507 4.3 47.8 1.0 C2D D:HEM507 4.3 42.9 1.0 C3D D:HEM507 4.3 42.7 1.0 C2B D:HEM507 4.3 48.3 1.0 C3B D:HEM507 4.3 49.9 1.0 C3A D:HEM507 4.3 45.9 1.0 C2A D:HEM507 4.4 43.5 1.0 NE D:ARG353 4.4 43.3 1.0 NE2 D:HIS74 4.5 32.9 1.0 CE1 D:PHE160 4.5 42.3 1.0 CG2 D:VAL73 4.6 28.8 1.0 NH2 D:ARG353 4.6 41.2 1.0 CD2 D:HIS74 4.7 31.2 1.0 CZ D:ARG353 4.9 43.1 1.0

T.P.Ko, J.Day, A.J.Malkin, A.Mcpherson. Structure of Orthorhombic Crystals of Beef Liver Catalase. Acta Crystallogr.,Sect.D V. 55 1383 1999.
ISSN: ISSN 0907-4449
PubMed: 10417406
DOI: 10.1107/S0907444999007052