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Iron in PDB 4bll: Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form II

Enzymatic activity of Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form II

All present enzymatic activity of Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form II:
1.11.1.16;

Protein crystallography data

The structure of Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form II, PDB code: 4bll was solved by F.J.Medrano, A.Romero, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.477 / 1.10
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 62.900, 62.900, 99.170, 90.00, 90.00, 90.00
R / Rfree (%) 12.32 / 13.56

Other elements in 4bll:

The structure of Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form II also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Zinc (Zn) 3 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form II (pdb code 4bll). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form II, PDB code: 4bll:

Iron binding site 1 out of 1 in 4bll

Go back to Iron Binding Sites List in 4bll
Iron binding site 1 out of 1 in the Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe500

b:6.4
occ:1.00
 FE A:HEM500 0.0 6.4 1.0
NC A:HEM500 2.0 6.8 1.0
NA A:HEM500 2.0 6.7 1.0
NB A:HEM500 2.1 7.1 1.0
ND A:HEM500 2.1 7.0 1.0
NE2 A:HIS170 2.1 6.6 1.0
O A:HOH2076 2.6 30.0 1.0
C1D A:HEM500 3.1 6.3 1.0
C1C A:HEM500 3.1 7.0 1.0
CE1 A:HIS170 3.1 6.6 1.0
C4D A:HEM500 3.1 6.9 1.0
C4A A:HEM500 3.1 6.8 1.0
C1B A:HEM500 3.1 7.0 1.0
C1A A:HEM500 3.1 6.9 1.0
C4C A:HEM500 3.1 6.5 1.0
C4B A:HEM500 3.1 6.7 1.0
CD2 A:HIS170 3.2 6.6 1.0
HE1 A:HIS170 3.2 8.0 1.0
HD2 A:HIS170 3.4 7.9 1.0
CHD A:HEM500 3.4 6.5 1.0
CHC A:HEM500 3.4 6.6 1.0
CHB A:HEM500 3.4 7.2 1.0
CHA A:HEM500 3.4 7.2 1.0
HE A:ARG44 3.8 17.2 1.0
HE2 A:PHE187 4.2 10.2 1.0
HG3 A:ARG44 4.2 11.8 1.0
ND1 A:HIS170 4.2 6.2 1.0
C2D A:HEM500 4.2 6.4 1.0
C3D A:HEM500 4.3 6.4 1.0
C2C A:HEM500 4.3 6.4 1.0
C3C A:HEM500 4.3 6.9 1.0
C3A A:HEM500 4.3 6.7 1.0
C2B A:HEM500 4.3 6.6 1.0
CG A:HIS170 4.3 6.2 1.0
C3B A:HEM500 4.3 6.8 1.0
C2A A:HEM500 4.3 6.7 1.0
HHC A:HEM500 4.4 7.9 1.0
HHD A:HEM500 4.4 7.8 1.0
HHB A:HEM500 4.4 8.7 1.0
HHA A:HEM500 4.4 8.7 1.0
O A:HOH2075 4.4 32.6 1.0
HD21 A:LEU167 4.5 9.5 1.0
HD2 A:PHE47 4.6 11.0 1.0
HD22 A:LEU167 4.6 9.5 1.0
HG A:SER169 4.6 8.4 1.0
NE A:ARG44 4.6 14.3 1.0
HE2 A:PHE47 4.8 13.4 1.0
HH21 A:ARG44 4.9 20.9 1.0
HD12 A:LEU229 4.9 9.5 1.0
CD2 A:LEU167 4.9 7.9 1.0
HD2 A:ARG44 4.9 14.3 1.0
CE2 A:PHE187 5.0 8.5 1.0
HD1 A:HIS170 5.0 7.4 1.0

Reference:

E.Fernandez-Fueyo, F.J.Ruiz-Duenas, M.J.Martinez, A.Romero, K.E.Hammel, F.J.Medrano, A.T.Martinez. Ligninolytic Peroxidase Genes in the Oyster Mushroom Genome: Heterologous Expression, Molecular Structure, Catalytic and Stability Properties, and Lignin-Degrading Ability. Biotechnol.Biofuels V. 7 2 2014.
ISSN: ISSN 1754-6834
PubMed: 24387130
DOI: 10.1186/1754-6834-7-2
Page generated: Mon Aug 5 00:05:10 2024

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