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Iron in PDB 4bly: Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form V

Enzymatic activity of Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form V

All present enzymatic activity of Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form V:
1.11.1.16;

Protein crystallography data

The structure of Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form V, PDB code: 4bly was solved by F.J.Medrano, A.Romero, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.940 / 1.79
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 93.780, 93.780, 38.150, 90.00, 90.00, 90.00
R / Rfree (%) 16.57 / 20.29

Other elements in 4bly:

The structure of Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form V also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form V (pdb code 4bly). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form V, PDB code: 4bly:

Iron binding site 1 out of 1 in 4bly

Go back to Iron Binding Sites List in 4bly
Iron binding site 1 out of 1 in the Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form V


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Fungal Versatile Peroxidase I From Pleurotus Ostreatus - Crystal Form V within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe500

b:11.5
occ:1.00
 FE A:HEM500 0.0 11.5 1.0
NC A:HEM500 2.0 11.3 1.0
NA A:HEM500 2.0 11.5 1.0
NB A:HEM500 2.1 12.8 1.0
ND A:HEM500 2.1 9.8 1.0
NE2 A:HIS170 2.1 11.0 1.0
CE1 A:HIS170 3.1 11.0 1.0
C1C A:HEM500 3.1 9.7 1.0
C1D A:HEM500 3.1 11.3 1.0
C4C A:HEM500 3.1 11.4 1.0
C4A A:HEM500 3.1 11.8 1.0
C1B A:HEM500 3.1 11.7 1.0
C1A A:HEM500 3.1 12.3 1.0
C4B A:HEM500 3.1 12.9 1.0
C4D A:HEM500 3.1 11.2 1.0
CD2 A:HIS170 3.2 11.4 1.0
CHD A:HEM500 3.4 12.4 1.0
CHC A:HEM500 3.5 12.1 1.0
CHB A:HEM500 3.5 10.3 1.0
CHA A:HEM500 3.5 12.3 1.0
O A:HOH2051 3.8 18.6 1.0
ND1 A:HIS170 4.2 10.3 1.0
C2C A:HEM500 4.3 10.3 1.0
C2D A:HEM500 4.3 11.2 1.0
C2B A:HEM500 4.3 13.2 1.0
C3A A:HEM500 4.3 12.2 1.0
C2A A:HEM500 4.3 12.3 1.0
CG A:HIS170 4.3 11.6 1.0
C3B A:HEM500 4.3 13.2 1.0
C3C A:HEM500 4.3 10.0 1.0
C3D A:HEM500 4.3 11.8 1.0
CD2 A:LEU167 4.8 9.7 1.0
CG A:ARG44 4.9 14.7 1.0

Reference:

E.Fernandez-Fueyo, F.J.Ruiz-Duenas, M.J.Martinez, A.Romero, K.E.Hammel, F.J.Medrano, A.T.Martinez. Ligninolytic Peroxidase Genes in the Oyster Mushroom Genome: Heterologous Expression, Molecular Structure, Catalytic and Stability Properties, and Lignin-Degrading Ability. Biotechnol.Biofuels V. 7 2 2014.
ISSN: ISSN 1754-6834
PubMed: 24387130
DOI: 10.1186/1754-6834-7-2
Page generated: Tue Aug 5 09:16:04 2025

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