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Iron in PDB 4bmq: Crystal Structure of Ribonucleotide Reductase Apo-Nrdf From Bacillus Cereus (Space Group C2)

Enzymatic activity of Crystal Structure of Ribonucleotide Reductase Apo-Nrdf From Bacillus Cereus (Space Group C2)

All present enzymatic activity of Crystal Structure of Ribonucleotide Reductase Apo-Nrdf From Bacillus Cereus (Space Group C2):
1.17.4.1;

Protein crystallography data

The structure of Crystal Structure of Ribonucleotide Reductase Apo-Nrdf From Bacillus Cereus (Space Group C2), PDB code: 4bmq was solved by A.B.Tomter, H.-P.Hersleth, M.Hammerstad, A.K.Rohr, K.K.Andersson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.73 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 121.020, 68.200, 87.100, 90.00, 106.01, 90.00
R / Rfree (%) 17.573 / 24.332

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Ribonucleotide Reductase Apo-Nrdf From Bacillus Cereus (Space Group C2) (pdb code 4bmq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Ribonucleotide Reductase Apo-Nrdf From Bacillus Cereus (Space Group C2), PDB code: 4bmq:

Iron binding site 1 out of 1 in 4bmq

Go back to Iron Binding Sites List in 4bmq
Iron binding site 1 out of 1 in the Crystal Structure of Ribonucleotide Reductase Apo-Nrdf From Bacillus Cereus (Space Group C2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Ribonucleotide Reductase Apo-Nrdf From Bacillus Cereus (Space Group C2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1323

b:19.8
occ:0.25
 OD1 A:ASP62 2.1 21.4 1.0
ND1 A:HIS96 2.3 12.0 1.0
OE2 A:GLU195 2.7 25.0 1.0
CD A:GLU195 2.8 23.2 1.0
OE1 A:GLU93 2.8 28.4 1.0
CG A:ASP62 3.1 19.3 1.0
OE2 A:GLU93 3.2 26.2 1.0
CE1 A:HIS96 3.2 11.4 1.0
CD A:GLU93 3.3 24.8 1.0
CG A:GLU195 3.3 20.4 1.0
CG A:HIS96 3.3 11.1 1.0
OE1 A:GLU195 3.4 24.5 1.0
OD2 A:ASP62 3.4 20.1 1.0
CZ A:PHE165 3.7 19.6 1.0
O A:HOH2041 3.7 39.2 1.0
CB A:HIS96 3.7 11.0 1.0
CE2 A:PHE165 3.7 19.5 1.0
CG2 A:ILE191 3.9 15.3 1.0
NE2 A:HIS96 4.3 10.4 1.0
CD2 A:HIS96 4.4 10.4 1.0
CA A:GLU93 4.5 15.4 1.0
CB A:ASP62 4.5 20.1 1.0
OE2 A:GLU161 4.6 22.7 1.0
CE1 A:PHE165 4.6 19.6 1.0
CG A:GLU93 4.7 21.2 1.0
CD2 A:PHE165 4.7 20.9 1.0
CB A:GLU195 4.8 17.2 1.0
CB A:GLU93 4.9 17.7 1.0
O A:GLU93 5.0 12.4 1.0

Reference:

M.Hammerstad, H.Hersleth, A.B.Tomter, A.K.Rohr, K.K.Andersson. Crystal Structure of Bacillus Cereus Class Ib Ribonucleotide Reductase Di-Iron Nrdf in Complex with Nrdi. Acs Chem.Biol. V. 9 526 2014.
ISSN: ISSN 1554-8929
PubMed: 24295378
DOI: 10.1021/CB400757H
Page generated: Mon Aug 5 00:13:13 2024

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