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Iron in PDB 4ewa: Study on Structure and Function Relationships in Human Pirin with Fe Ion

Enzymatic activity of Study on Structure and Function Relationships in Human Pirin with Fe Ion

All present enzymatic activity of Study on Structure and Function Relationships in Human Pirin with Fe Ion:
1.13.11.24;

Protein crystallography data

The structure of Study on Structure and Function Relationships in Human Pirin with Fe Ion, PDB code: 4ewa was solved by F.Liu, I.Rehmani, L.Chen, R.Fu, V.Serrano, D.W.Wilson, A.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.48 / 2.47
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.171, 66.696, 106.208, 90.00, 90.00, 90.00
R / Rfree (%) 24 / 29.6

Iron Binding Sites:

The binding sites of Iron atom in the Study on Structure and Function Relationships in Human Pirin with Fe Ion (pdb code 4ewa). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Study on Structure and Function Relationships in Human Pirin with Fe Ion, PDB code: 4ewa:

Iron binding site 1 out of 1 in 4ewa

Go back to Iron Binding Sites List in 4ewa
Iron binding site 1 out of 1 in the Study on Structure and Function Relationships in Human Pirin with Fe Ion


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Study on Structure and Function Relationships in Human Pirin with Fe Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1001

b:18.7
occ:1.00
NE2 A:HIS56 2.1 21.7 1.0
NE2 A:HIS58 2.1 20.5 1.0
NE2 A:HIS101 2.2 18.9 1.0
O A:HOH1128 2.3 14.6 1.0
CE1 A:HIS101 3.0 18.8 1.0
CD2 A:HIS58 3.0 20.1 1.0
CD2 A:HIS56 3.1 21.6 1.0
CE1 A:HIS56 3.1 21.9 1.0
OE2 A:GLU103 3.2 21.9 1.0
CE1 A:HIS58 3.2 20.4 1.0
CD2 A:HIS101 3.3 18.8 1.0
CD A:GLU103 3.9 21.6 1.0
ND1 A:HIS101 4.2 18.7 1.0
NE2 A:GLN115 4.2 17.5 1.0
ND1 A:HIS56 4.2 21.8 1.0
CG A:HIS56 4.2 21.7 1.0
CG A:HIS58 4.2 20.0 1.0
ND1 A:HIS58 4.3 20.4 1.0
CG A:HIS101 4.3 19.0 1.0
OE1 A:GLU103 4.4 21.5 1.0
CG2 A:THR63 4.8 14.6 1.0
CG A:GLU103 4.9 21.4 1.0
OG1 A:THR63 4.9 14.2 1.0

Reference:

F.Liu, I.Rehmani, S.Esaki, R.Fu, L.Chen, V.De Serrano, A.Liu. Pirin Is An Iron-Dependent Redox Regulator of Nf-Kappa B. Proc.Natl.Acad.Sci.Usa V. 110 9722 2013.
ISSN: ISSN 0027-8424
PubMed: 23716661
DOI: 10.1073/PNAS.1221743110
Page generated: Sun Dec 13 15:33:21 2020

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