Iron in PDB 4ezf: The Crystal Structure of A Human Mitoneet Mutant with An Ala Inserted Between Asp 67 and Lys 68

The structure of The Crystal Structure of A Human Mitoneet Mutant with An Ala Inserted Between Asp 67 and Lys 68, PDB code: 4ezf was solved by E.L.Baxter, J.A.Zuris, C.Wang, H.L.Axelrod, A.E.Cohen, M.L.Paddock, R.Nechushtai, J.N.Onuchic, P.A.Jennings, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.35 / 1.19
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	39.626, 55.356, 58.924, 90.00, 90.00, 90.00
R / Rfree (%)	16.5 / 16.7

The binding sites of Iron atom in the The Crystal Structure of A Human Mitoneet Mutant with An Ala Inserted Between Asp 67 and Lys 68 (pdb code 4ezf). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the The Crystal Structure of A Human Mitoneet Mutant with An Ala Inserted Between Asp 67 and Lys 68, PDB code: 4ezf:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the The Crystal Structure of A Human Mitoneet Mutant with An Ala Inserted Between Asp 67 and Lys 68


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Crystal Structure of A Human Mitoneet Mutant with An Ala Inserted Between Asp 67 and Lys 68 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:11.4 occ:1.00 FE1 A:FES201 0.0 11.4 1.0 S1 A:FES201 2.2 12.8 1.0 S2 A:FES201 2.2 11.1 1.0 SG A:CYS74 2.3 12.0 1.0 SG A:CYS72 2.3 11.2 1.0 FE2 A:FES201 2.7 12.2 1.0 CB A:CYS72 3.4 11.2 1.0 CB A:CYS74 3.4 12.1 1.0 N A:CYS74 3.6 10.6 1.0 CA A:CYS72 3.7 10.8 1.0 CA A:CYS74 4.0 11.1 1.0 N A:ARG73 4.0 9.8 1.0 CB A:HIS87 4.1 13.2 1.0 N A:HIS87 4.2 13.7 1.0 C A:CYS72 4.3 10.2 1.0 ND1 A:HIS87 4.3 12.9 1.0 N A:TRP75 4.4 11.2 1.0 N A:SER77 4.4 14.3 1.0 CB A:SER77 4.4 14.5 1.0 C A:CYS74 4.5 10.9 1.0 CA A:HIS87 4.6 13.5 1.0 N A:ARG76 4.6 12.8 1.0 C A:ARG73 4.6 10.2 1.0 CG A:HIS87 4.7 13.5 1.0 SG A:CYS83 4.7 15.0 1.0 CA A:CYS83 4.8 13.9 1.0 CA A:SER77 4.9 15.0 1.0 CB A:CYS83 4.9 14.3 1.0 CA A:ARG73 4.9 9.9 1.0

Iron binding site 2 out of 4 in the The Crystal Structure of A Human Mitoneet Mutant with An Ala Inserted Between Asp 67 and Lys 68


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Crystal Structure of A Human Mitoneet Mutant with An Ala Inserted Between Asp 67 and Lys 68 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:12.2 occ:1.00 FE2 A:FES201 0.0 12.2 1.0 ND1 A:HIS87 2.2 12.9 1.0 S1 A:FES201 2.2 12.8 1.0 S2 A:FES201 2.2 11.1 1.0 SG A:CYS83 2.4 15.0 1.0 FE1 A:FES201 2.7 11.4 1.0 CE1 A:HIS87 3.0 13.8 1.0 CG A:HIS87 3.2 13.5 1.0 CB A:CYS83 3.4 14.3 1.0 CB A:HIS87 3.6 13.2 1.0 CA A:CYS83 3.9 13.9 1.0 N A:HIS87 4.0 13.7 1.0 N A:GLY85 4.0 16.0 1.0 NE2 A:HIS87 4.2 14.7 1.0 CD A:PRO100 4.3 11.5 1.0 CD2 A:HIS87 4.3 14.3 1.0 CB A:PRO100 4.3 11.9 1.0 N A:ASP84 4.4 14.9 1.0 CA A:GLY85 4.4 15.8 1.0 CA A:HIS87 4.4 13.5 1.0 SG A:CYS74 4.4 12.0 1.0 N A:ALA86 4.5 15.1 1.0 CG A:PRO100 4.5 12.2 1.0 C A:CYS83 4.5 15.0 1.0 C A:GLY85 4.6 15.3 1.0 SG A:CYS72 4.6 11.2 1.0 CA A:CYS72 4.7 10.8 1.0 CB A:CYS72 4.8 11.2 1.0 N A:PRO100 4.8 10.6 1.0 CA A:PRO100 5.0 11.0 1.0

Iron binding site 3 out of 4 in the The Crystal Structure of A Human Mitoneet Mutant with An Ala Inserted Between Asp 67 and Lys 68


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Crystal Structure of A Human Mitoneet Mutant with An Ala Inserted Between Asp 67 and Lys 68 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:11.8 occ:1.00 FE1 B:FES201 0.0 11.8 1.0 S1 B:FES201 2.2 13.4 1.0 S2 B:FES201 2.2 11.4 1.0 SG B:CYS74 2.3 12.3 1.0 SG B:CYS72 2.3 11.2 1.0 FE2 B:FES201 2.7 12.5 1.0 CB B:CYS74 3.4 11.8 1.0 CB B:CYS72 3.4 11.2 1.0 N B:CYS74 3.6 10.7 1.0 CA B:CYS72 3.8 10.7 1.0 CA B:CYS74 3.9 11.1 1.0 N B:ARG73 4.0 10.2 1.0 CB B:HIS87 4.1 13.0 1.0 N B:HIS87 4.2 13.2 1.0 ND1 B:HIS87 4.3 12.8 1.0 C B:CYS72 4.3 10.4 1.0 N B:TRP75 4.4 11.3 1.0 N B:SER77 4.4 14.4 1.0 C B:CYS74 4.5 11.3 1.0 CB B:SER77 4.5 15.2 1.0 CA B:HIS87 4.5 13.4 1.0 N B:ARG76 4.6 12.7 1.0 C B:ARG73 4.7 10.5 1.0 CG B:HIS87 4.7 13.2 1.0 SG B:CYS83 4.7 15.5 1.0 CA B:CYS83 4.8 14.5 1.0 CB B:CYS83 4.9 14.6 1.0 CA B:SER77 4.9 15.5 1.0 CA B:ARG73 4.9 9.9 1.0

Iron binding site 4 out of 4 in the The Crystal Structure of A Human Mitoneet Mutant with An Ala Inserted Between Asp 67 and Lys 68


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The Crystal Structure of A Human Mitoneet Mutant with An Ala Inserted Between Asp 67 and Lys 68 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:12.5 occ:1.00 FE2 B:FES201 0.0 12.5 1.0 ND1 B:HIS87 2.2 12.8 1.0 S1 B:FES201 2.2 13.4 1.0 S2 B:FES201 2.2 11.4 1.0 SG B:CYS83 2.4 15.5 1.0 FE1 B:FES201 2.7 11.8 1.0 CE1 B:HIS87 3.0 13.8 1.0 CG B:HIS87 3.2 13.2 1.0 CB B:CYS83 3.4 14.6 1.0 CB B:HIS87 3.6 13.0 1.0 CA B:CYS83 3.9 14.5 1.0 N B:HIS87 4.0 13.2 1.0 N B:GLY85 4.0 15.9 1.0 NE2 B:HIS87 4.2 14.6 1.0 CD B:PRO100 4.2 12.3 1.0 CD2 B:HIS87 4.3 14.1 1.0 N B:ASP84 4.3 15.1 1.0 CA B:GLY85 4.3 15.4 1.0 CB B:PRO100 4.4 11.9 1.0 CA B:HIS87 4.4 13.4 1.0 SG B:CYS74 4.4 12.3 1.0 N B:ALA86 4.5 14.5 1.0 CG B:PRO100 4.5 12.5 1.0 C B:CYS83 4.5 15.4 1.0 C B:GLY85 4.5 14.9 1.0 SG B:CYS72 4.6 11.2 1.0 CA B:CYS72 4.7 10.7 1.0 N B:PRO100 4.8 10.7 1.0 CB B:CYS72 4.8 11.2 1.0 CA B:PRO100 5.0 11.1 1.0

E.L.Baxter, J.A.Zuris, C.Wang, P.L.Vo, H.L.Axelrod, A.E.Cohen, M.L.Paddock, R.Nechushtai, J.N.Onuchic, P.A.Jennings. Allosteric Control in A Metalloprotein Dramatically Alters Function. Proc.Natl.Acad.Sci.Usa V. 110 948 2013.
ISSN: ISSN 0027-8424
PubMed: 23271805
DOI: 10.1073/PNAS.1208286110