Iron in PDB 4xdd: Apo [Fefe]-Hydrogenase Cpi
Enzymatic activity of Apo [Fefe]-Hydrogenase Cpi
All present enzymatic activity of Apo [Fefe]-Hydrogenase Cpi:
1.12.7.2;
Protein crystallography data
The structure of Apo [Fefe]-Hydrogenase Cpi, PDB code: 4xdd
was solved by
J.Esselborn,
E.Hofmann,
G.Kurisu,
T.Happe,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.96 /
1.60
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
90.057,
71.807,
103.308,
90.00,
97.93,
90.00
|
R / Rfree (%)
|
14.4 /
16.6
|
Other elements in 4xdd:
The structure of Apo [Fefe]-Hydrogenase Cpi also contains other interesting chemical elements:
Iron Binding Sites:
Iron binding site 1 out
of 36 in 4xdd
Go back to
Iron Binding Sites List in 4xdd
Iron binding site 1 out
of 36 in the Apo [Fefe]-Hydrogenase Cpi
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Apo [Fefe]-Hydrogenase Cpi within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:18.9
occ:1.00
|
FE1
|
A:SF4601
|
0.0
|
18.9
|
1.0
|
S2
|
A:SF4601
|
2.2
|
19.2
|
1.0
|
SG
|
A:CYS355
|
2.3
|
18.3
|
1.0
|
S4
|
A:SF4601
|
2.3
|
19.6
|
1.0
|
S3
|
A:SF4601
|
2.3
|
18.8
|
1.0
|
FE3
|
A:SF4601
|
2.7
|
18.6
|
1.0
|
FE4
|
A:SF4601
|
2.7
|
18.8
|
1.0
|
FE2
|
A:SF4601
|
2.7
|
18.6
|
1.0
|
HB2
|
A:CYS355
|
2.9
|
21.7
|
1.0
|
CB
|
A:CYS355
|
3.2
|
18.1
|
1.0
|
HD2
|
A:PRO301
|
3.8
|
21.4
|
1.0
|
HB3
|
A:SER357
|
3.8
|
23.4
|
1.0
|
HB3
|
A:CYS355
|
3.8
|
21.7
|
1.0
|
O
|
A:HOH886
|
3.8
|
16.8
|
1.0
|
S1
|
A:SF4601
|
3.9
|
19.2
|
1.0
|
HG2
|
A:LYS358
|
3.9
|
21.4
|
1.0
|
HG2
|
A:PRO301
|
4.0
|
26.2
|
1.0
|
HE2
|
A:LYS358
|
4.1
|
22.2
|
1.0
|
HA
|
A:CYS355
|
4.2
|
20.4
|
1.0
|
CA
|
A:CYS355
|
4.3
|
17.0
|
1.0
|
HB2
|
A:SER357
|
4.4
|
23.4
|
1.0
|
H
|
A:SER357
|
4.4
|
19.7
|
1.0
|
H
|
A:GLY302
|
4.5
|
21.6
|
1.0
|
CB
|
A:SER357
|
4.5
|
19.5
|
1.0
|
CD
|
A:PRO301
|
4.6
|
17.8
|
1.0
|
H
|
A:LYS358
|
4.6
|
22.8
|
1.0
|
SG
|
A:CYS503
|
4.7
|
19.0
|
1.0
|
CG
|
A:PRO301
|
4.7
|
21.8
|
1.0
|
SG
|
A:CYS300
|
4.8
|
18.9
|
1.0
|
SG
|
A:CYS499
|
4.8
|
19.4
|
1.0
|
HA
|
A:CYS300
|
4.8
|
22.0
|
1.0
|
CG
|
A:LYS358
|
4.8
|
17.9
|
1.0
|
HA
|
A:CYS503
|
4.9
|
21.0
|
1.0
|
HG3
|
A:LYS358
|
4.9
|
21.4
|
1.0
|
CE
|
A:LYS358
|
4.9
|
18.5
|
1.0
|
HA
|
A:CYS193
|
4.9
|
21.5
|
1.0
|
HE3
|
A:LYS358
|
4.9
|
22.2
|
1.0
|
HA3
|
A:GLY506
|
4.9
|
20.6
|
1.0
|
HG3
|
A:PRO301
|
5.0
|
26.2
|
1.0
|
|
Iron binding site 2 out
of 36 in 4xdd
Go back to
Iron Binding Sites List in 4xdd
Iron binding site 2 out
of 36 in the Apo [Fefe]-Hydrogenase Cpi
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Apo [Fefe]-Hydrogenase Cpi within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:18.6
occ:1.00
|
FE2
|
A:SF4601
|
0.0
|
18.6
|
1.0
|
S1
|
A:SF4601
|
2.3
|
19.2
|
1.0
|
SG
|
A:CYS499
|
2.3
|
19.4
|
1.0
|
S4
|
A:SF4601
|
2.3
|
19.6
|
1.0
|
S3
|
A:SF4601
|
2.3
|
18.8
|
1.0
|
FE3
|
A:SF4601
|
2.7
|
18.6
|
1.0
|
FE1
|
A:SF4601
|
2.7
|
18.9
|
1.0
|
FE4
|
A:SF4601
|
2.7
|
18.8
|
1.0
|
HB2
|
A:CYS499
|
2.9
|
24.8
|
1.0
|
CB
|
A:CYS499
|
3.2
|
20.7
|
1.0
|
H
|
A:CYS499
|
3.3
|
22.1
|
1.0
|
HA2
|
A:GLY506
|
3.6
|
20.6
|
1.0
|
HB3
|
A:ALA498
|
3.7
|
25.0
|
1.0
|
N
|
A:CYS499
|
3.7
|
18.5
|
1.0
|
HA
|
A:CYS503
|
3.9
|
21.0
|
1.0
|
S2
|
A:SF4601
|
3.9
|
19.2
|
1.0
|
HB3
|
A:CYS499
|
3.9
|
24.8
|
1.0
|
CA
|
A:CYS499
|
4.1
|
19.0
|
1.0
|
O
|
A:HOH886
|
4.1
|
16.8
|
1.0
|
HA3
|
A:GLY506
|
4.2
|
20.6
|
1.0
|
HB2
|
A:CYS193
|
4.3
|
20.6
|
1.0
|
H
|
A:ALA498
|
4.3
|
22.5
|
1.0
|
CA
|
A:GLY506
|
4.4
|
17.2
|
1.0
|
H
|
A:GLY507
|
4.5
|
22.4
|
1.0
|
SG
|
A:CYS355
|
4.6
|
18.3
|
1.0
|
CB
|
A:ALA498
|
4.6
|
20.8
|
1.0
|
HA
|
A:CYS499
|
4.6
|
22.8
|
1.0
|
C
|
A:ALA498
|
4.6
|
18.7
|
1.0
|
HB2
|
A:CYS355
|
4.7
|
21.7
|
1.0
|
SG
|
A:CYS300
|
4.7
|
18.9
|
1.0
|
HA
|
A:CYS193
|
4.8
|
21.5
|
1.0
|
CA
|
A:CYS503
|
4.8
|
17.5
|
1.0
|
HE21
|
A:GLN195
|
4.8
|
23.5
|
1.0
|
N
|
A:ALA498
|
4.8
|
18.8
|
1.0
|
SG
|
A:CYS503
|
4.9
|
19.0
|
1.0
|
CA
|
A:ALA498
|
4.9
|
18.6
|
1.0
|
|
Iron binding site 3 out
of 36 in 4xdd
Go back to
Iron Binding Sites List in 4xdd
Iron binding site 3 out
of 36 in the Apo [Fefe]-Hydrogenase Cpi
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Apo [Fefe]-Hydrogenase Cpi within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:18.6
occ:1.00
|
FE3
|
A:SF4601
|
0.0
|
18.6
|
1.0
|
S4
|
A:SF4601
|
2.2
|
19.6
|
1.0
|
SG
|
A:CYS300
|
2.3
|
18.9
|
1.0
|
S2
|
A:SF4601
|
2.3
|
19.2
|
1.0
|
S1
|
A:SF4601
|
2.3
|
19.2
|
1.0
|
FE1
|
A:SF4601
|
2.7
|
18.9
|
1.0
|
FE4
|
A:SF4601
|
2.7
|
18.8
|
1.0
|
FE2
|
A:SF4601
|
2.7
|
18.6
|
1.0
|
H
|
A:ALA498
|
3.3
|
22.5
|
1.0
|
HB2
|
A:CYS300
|
3.3
|
24.2
|
1.0
|
CB
|
A:CYS300
|
3.3
|
20.2
|
1.0
|
HB3
|
A:ALA498
|
3.4
|
25.0
|
1.0
|
HA
|
A:CYS300
|
3.5
|
22.0
|
1.0
|
H
|
A:GLY302
|
3.5
|
21.6
|
1.0
|
HD2
|
A:PRO301
|
3.6
|
21.4
|
1.0
|
S3
|
A:SF4601
|
3.8
|
18.8
|
1.0
|
CA
|
A:CYS300
|
3.9
|
18.3
|
1.0
|
H
|
A:CYS499
|
4.0
|
22.1
|
1.0
|
N
|
A:ALA498
|
4.1
|
18.8
|
1.0
|
HB3
|
A:CYS300
|
4.2
|
24.2
|
1.0
|
CB
|
A:ALA498
|
4.2
|
20.8
|
1.0
|
HA3
|
A:GLY302
|
4.2
|
21.6
|
1.0
|
HB2
|
A:ALA498
|
4.3
|
25.0
|
1.0
|
HA
|
A:MET497
|
4.3
|
22.4
|
1.0
|
N
|
A:GLY302
|
4.4
|
18.0
|
1.0
|
C
|
A:CYS300
|
4.4
|
17.8
|
1.0
|
H
|
A:TRP303
|
4.4
|
22.9
|
1.0
|
CD
|
A:PRO301
|
4.4
|
17.8
|
1.0
|
N
|
A:PRO301
|
4.5
|
19.2
|
1.0
|
SD
|
A:MET497
|
4.6
|
23.4
|
1.0
|
HB3
|
A:MET497
|
4.6
|
24.6
|
1.0
|
HG2
|
A:PRO301
|
4.6
|
26.2
|
1.0
|
SG
|
A:CYS503
|
4.7
|
19.0
|
1.0
|
CA
|
A:ALA498
|
4.7
|
18.6
|
1.0
|
N
|
A:CYS499
|
4.7
|
18.5
|
1.0
|
SG
|
A:CYS499
|
4.8
|
19.4
|
1.0
|
CA
|
A:GLY302
|
4.8
|
18.0
|
1.0
|
SG
|
A:CYS355
|
4.8
|
18.3
|
1.0
|
HB2
|
A:CYS499
|
5.0
|
24.8
|
1.0
|
HB1
|
A:ALA498
|
5.0
|
25.0
|
1.0
|
|
Iron binding site 4 out
of 36 in 4xdd
Go back to
Iron Binding Sites List in 4xdd
Iron binding site 4 out
of 36 in the Apo [Fefe]-Hydrogenase Cpi
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Apo [Fefe]-Hydrogenase Cpi within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:18.8
occ:1.00
|
FE4
|
A:SF4601
|
0.0
|
18.8
|
1.0
|
S3
|
A:SF4601
|
2.2
|
18.8
|
1.0
|
SG
|
A:CYS503
|
2.3
|
19.0
|
1.0
|
S2
|
A:SF4601
|
2.3
|
19.2
|
1.0
|
S1
|
A:SF4601
|
2.3
|
19.2
|
1.0
|
FE1
|
A:SF4601
|
2.7
|
18.9
|
1.0
|
FE3
|
A:SF4601
|
2.7
|
18.6
|
1.0
|
FE2
|
A:SF4601
|
2.7
|
18.6
|
1.0
|
HA
|
A:CYS503
|
2.8
|
21.0
|
1.0
|
CB
|
A:CYS503
|
3.2
|
18.5
|
1.0
|
HB3
|
A:CYS503
|
3.4
|
22.2
|
1.0
|
CA
|
A:CYS503
|
3.4
|
17.5
|
1.0
|
S4
|
A:SF4601
|
3.9
|
19.6
|
1.0
|
N
|
A:CYS503
|
3.9
|
18.7
|
1.0
|
H
|
A:CYS503
|
4.1
|
22.4
|
1.0
|
HB2
|
A:CYS503
|
4.1
|
22.2
|
1.0
|
HB2
|
A:CYS355
|
4.1
|
21.7
|
1.0
|
O
|
A:HOH1381
|
4.3
|
20.2
|
1.0
|
SD
|
A:MET497
|
4.4
|
23.4
|
1.0
|
HB2
|
A:CYS499
|
4.4
|
24.8
|
1.0
|
HG2
|
A:PRO354
|
4.6
|
21.4
|
1.0
|
C
|
A:GLY502
|
4.6
|
18.9
|
1.0
|
HB2
|
A:CYS300
|
4.6
|
24.2
|
1.0
|
SG
|
A:CYS355
|
4.7
|
18.3
|
1.0
|
SG
|
A:CYS300
|
4.8
|
18.9
|
1.0
|
C
|
A:CYS503
|
4.8
|
19.0
|
1.0
|
H
|
A:CYS499
|
4.8
|
22.1
|
1.0
|
HA
|
A:CYS300
|
4.8
|
22.0
|
1.0
|
HD2
|
A:PRO301
|
4.9
|
21.4
|
1.0
|
HA3
|
A:GLY506
|
4.9
|
20.6
|
1.0
|
CB
|
A:CYS355
|
4.9
|
18.1
|
1.0
|
SG
|
A:CYS499
|
4.9
|
19.4
|
1.0
|
HB3
|
A:MET497
|
4.9
|
24.6
|
1.0
|
O
|
A:HOH1042
|
5.0
|
18.3
|
1.0
|
HA2
|
A:GLY506
|
5.0
|
20.6
|
1.0
|
HA2
|
A:GLY502
|
5.0
|
24.6
|
1.0
|
O
|
A:GLY502
|
5.0
|
19.4
|
1.0
|
|
Iron binding site 5 out
of 36 in 4xdd
Go back to
Iron Binding Sites List in 4xdd
Iron binding site 5 out
of 36 in the Apo [Fefe]-Hydrogenase Cpi
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Apo [Fefe]-Hydrogenase Cpi within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe602
b:18.9
occ:1.00
|
FE1
|
A:SF4602
|
0.0
|
18.9
|
1.0
|
S4
|
A:SF4602
|
2.3
|
19.3
|
1.0
|
SG
|
A:CYS193
|
2.3
|
18.9
|
1.0
|
S2
|
A:SF4602
|
2.3
|
19.4
|
1.0
|
S3
|
A:SF4602
|
2.3
|
19.3
|
1.0
|
FE3
|
A:SF4602
|
2.8
|
19.1
|
1.0
|
FE2
|
A:SF4602
|
2.8
|
19.1
|
1.0
|
FE4
|
A:SF4602
|
2.8
|
19.3
|
1.0
|
H
|
A:CYS193
|
3.0
|
20.7
|
1.0
|
HG21
|
A:THR161
|
3.2
|
26.3
|
1.0
|
H
|
A:GLY194
|
3.2
|
23.2
|
1.0
|
H
|
A:GLN195
|
3.4
|
23.5
|
1.0
|
N
|
A:CYS193
|
3.7
|
17.3
|
1.0
|
CB
|
A:CYS193
|
3.7
|
17.1
|
1.0
|
N
|
A:GLY194
|
3.8
|
19.4
|
1.0
|
HB2
|
A:LEU191
|
3.9
|
20.6
|
1.0
|
HB2
|
A:GLN195
|
3.9
|
21.8
|
1.0
|
HB3
|
A:CYS193
|
3.9
|
20.6
|
1.0
|
H
|
A:LEU191
|
3.9
|
22.0
|
1.0
|
S1
|
A:SF4602
|
4.0
|
19.5
|
1.0
|
CA
|
A:CYS193
|
4.0
|
17.9
|
1.0
|
CG2
|
A:THR161
|
4.1
|
21.9
|
1.0
|
H
|
A:LEU192
|
4.1
|
20.8
|
1.0
|
HG23
|
A:THR161
|
4.2
|
26.3
|
1.0
|
N
|
A:GLN195
|
4.2
|
19.6
|
1.0
|
H
|
A:CYS196
|
4.2
|
21.6
|
1.0
|
C
|
A:CYS193
|
4.2
|
18.1
|
1.0
|
N
|
A:LEU192
|
4.4
|
17.4
|
1.0
|
HG22
|
A:THR161
|
4.4
|
26.3
|
1.0
|
HB2
|
A:CYS193
|
4.4
|
20.6
|
1.0
|
C
|
A:LEU192
|
4.6
|
19.1
|
1.0
|
HA
|
A:LEU192
|
4.6
|
21.6
|
1.0
|
N
|
A:LEU191
|
4.7
|
18.4
|
1.0
|
CA
|
A:GLY194
|
4.7
|
19.1
|
1.0
|
SG
|
A:CYS190
|
4.7
|
19.6
|
1.0
|
HA2
|
A:GLY194
|
4.7
|
22.9
|
1.0
|
SG
|
A:CYS196
|
4.7
|
19.1
|
1.0
|
CB
|
A:GLN195
|
4.8
|
18.2
|
1.0
|
CB
|
A:LEU191
|
4.8
|
17.1
|
1.0
|
HG2
|
A:GLN195
|
4.8
|
23.1
|
1.0
|
HA
|
A:CYS157
|
4.8
|
22.1
|
1.0
|
HG
|
A:LEU191
|
4.8
|
21.5
|
1.0
|
CA
|
A:LEU192
|
4.8
|
18.0
|
1.0
|
SG
|
A:CYS157
|
4.9
|
19.8
|
1.0
|
C
|
A:GLY194
|
4.9
|
20.9
|
1.0
|
C
|
A:LEU191
|
5.0
|
19.1
|
1.0
|
N
|
A:CYS196
|
5.0
|
18.0
|
1.0
|
HA
|
A:CYS193
|
5.0
|
21.5
|
1.0
|
|
Iron binding site 6 out
of 36 in 4xdd
Go back to
Iron Binding Sites List in 4xdd
Iron binding site 6 out
of 36 in the Apo [Fefe]-Hydrogenase Cpi
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Apo [Fefe]-Hydrogenase Cpi within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe602
b:19.1
occ:1.00
|
FE2
|
A:SF4602
|
0.0
|
19.1
|
1.0
|
S3
|
A:SF4602
|
2.3
|
19.3
|
1.0
|
S1
|
A:SF4602
|
2.3
|
19.5
|
1.0
|
SG
|
A:CYS157
|
2.3
|
19.8
|
1.0
|
S4
|
A:SF4602
|
2.3
|
19.3
|
1.0
|
FE4
|
A:SF4602
|
2.7
|
19.3
|
1.0
|
FE3
|
A:SF4602
|
2.7
|
19.1
|
1.0
|
FE1
|
A:SF4602
|
2.8
|
18.9
|
1.0
|
HB2
|
A:CYS157
|
3.0
|
23.8
|
1.0
|
HB3
|
A:ALA165
|
3.2
|
22.6
|
1.0
|
CB
|
A:CYS157
|
3.2
|
19.8
|
1.0
|
HA
|
A:CYS157
|
3.5
|
22.1
|
1.0
|
HG21
|
A:THR161
|
3.8
|
26.3
|
1.0
|
HG1
|
A:THR163
|
3.8
|
24.8
|
1.0
|
H
|
A:MET166
|
3.8
|
24.2
|
1.0
|
S2
|
A:SF4602
|
3.9
|
19.4
|
1.0
|
CA
|
A:CYS157
|
4.0
|
18.4
|
1.0
|
HB2
|
A:MET166
|
4.0
|
23.9
|
1.0
|
HB3
|
A:CYS157
|
4.0
|
23.8
|
1.0
|
H
|
A:ALA165
|
4.1
|
23.8
|
1.0
|
OG1
|
A:THR163
|
4.1
|
20.6
|
1.0
|
HG1
|
A:THR161
|
4.1
|
22.4
|
1.0
|
CB
|
A:ALA165
|
4.1
|
18.9
|
1.0
|
OG1
|
A:THR161
|
4.3
|
18.7
|
1.0
|
N
|
A:MET166
|
4.4
|
20.2
|
1.0
|
HG23
|
A:THR161
|
4.4
|
26.3
|
1.0
|
HB3
|
A:CYS196
|
4.4
|
21.2
|
1.0
|
CG2
|
A:THR161
|
4.5
|
21.9
|
1.0
|
HB3
|
A:MET166
|
4.5
|
23.9
|
1.0
|
HB2
|
A:ALA165
|
4.5
|
22.6
|
1.0
|
HB1
|
A:ALA165
|
4.6
|
22.6
|
1.0
|
CB
|
A:MET166
|
4.6
|
19.9
|
1.0
|
H
|
A:LEU191
|
4.6
|
22.0
|
1.0
|
N
|
A:ALA165
|
4.7
|
19.8
|
1.0
|
HA
|
A:CYS190
|
4.7
|
27.6
|
1.0
|
C
|
A:CYS157
|
4.8
|
19.0
|
1.0
|
CA
|
A:ALA165
|
4.8
|
20.5
|
1.0
|
SG
|
A:CYS193
|
4.8
|
18.9
|
1.0
|
H
|
A:CYS196
|
4.8
|
21.6
|
1.0
|
SG
|
A:CYS196
|
4.9
|
19.1
|
1.0
|
O
|
A:CYS157
|
4.9
|
20.8
|
1.0
|
C
|
A:ALA165
|
4.9
|
20.5
|
1.0
|
SG
|
A:CYS190
|
4.9
|
19.6
|
1.0
|
HE2
|
A:MET166
|
5.0
|
22.5
|
1.0
|
|
Iron binding site 7 out
of 36 in 4xdd
Go back to
Iron Binding Sites List in 4xdd
Iron binding site 7 out
of 36 in the Apo [Fefe]-Hydrogenase Cpi
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Apo [Fefe]-Hydrogenase Cpi within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe602
b:19.1
occ:1.00
|
FE3
|
A:SF4602
|
0.0
|
19.1
|
1.0
|
S2
|
A:SF4602
|
2.3
|
19.4
|
1.0
|
SG
|
A:CYS196
|
2.3
|
19.1
|
1.0
|
S4
|
A:SF4602
|
2.3
|
19.3
|
1.0
|
S1
|
A:SF4602
|
2.3
|
19.5
|
1.0
|
FE4
|
A:SF4602
|
2.7
|
19.3
|
1.0
|
FE2
|
A:SF4602
|
2.7
|
19.1
|
1.0
|
FE1
|
A:SF4602
|
2.8
|
18.9
|
1.0
|
HB3
|
A:CYS196
|
3.0
|
21.2
|
1.0
|
H
|
A:CYS196
|
3.1
|
21.6
|
1.0
|
CB
|
A:CYS196
|
3.3
|
17.7
|
1.0
|
HE2
|
A:MET166
|
3.7
|
22.5
|
1.0
|
HD11
|
A:LEU140
|
3.8
|
30.7
|
1.0
|
H
|
A:GLY194
|
3.8
|
23.2
|
1.0
|
N
|
A:CYS196
|
3.9
|
18.0
|
1.0
|
S3
|
A:SF4602
|
3.9
|
19.3
|
1.0
|
HB2
|
A:CYS196
|
4.0
|
21.2
|
1.0
|
HB2
|
A:MET166
|
4.1
|
23.9
|
1.0
|
HA2
|
A:GLY194
|
4.1
|
22.9
|
1.0
|
HB2
|
A:CYS157
|
4.1
|
23.8
|
1.0
|
HD13
|
A:LEU140
|
4.1
|
30.7
|
1.0
|
H
|
A:GLN195
|
4.2
|
23.5
|
1.0
|
CA
|
A:CYS196
|
4.2
|
18.6
|
1.0
|
CD1
|
A:LEU140
|
4.4
|
25.6
|
1.0
|
N
|
A:GLY194
|
4.4
|
19.4
|
1.0
|
N
|
A:GLN195
|
4.5
|
19.6
|
1.0
|
CE
|
A:MET166
|
4.5
|
18.8
|
1.0
|
CA
|
A:GLY194
|
4.6
|
19.1
|
1.0
|
HE3
|
A:MET166
|
4.6
|
22.5
|
1.0
|
SG
|
A:CYS190
|
4.6
|
19.6
|
1.0
|
SG
|
A:CYS193
|
4.7
|
18.9
|
1.0
|
SG
|
A:CYS157
|
4.7
|
19.8
|
1.0
|
C
|
A:GLY194
|
4.8
|
20.9
|
1.0
|
HB2
|
A:GLN195
|
4.8
|
21.8
|
1.0
|
HA
|
A:CYS196
|
4.8
|
22.4
|
1.0
|
H
|
A:ILE197
|
4.8
|
21.7
|
1.0
|
CB
|
A:CYS157
|
4.9
|
19.8
|
1.0
|
HE1
|
A:MET166
|
4.9
|
22.5
|
1.0
|
HD12
|
A:LEU140
|
4.9
|
30.7
|
1.0
|
HD21
|
A:LEU140
|
4.9
|
31.6
|
1.0
|
H
|
A:CYS193
|
4.9
|
20.7
|
1.0
|
C
|
A:GLN195
|
5.0
|
18.8
|
1.0
|
HE2
|
A:PHE185
|
5.0
|
28.3
|
1.0
|
|
Iron binding site 8 out
of 36 in 4xdd
Go back to
Iron Binding Sites List in 4xdd
Iron binding site 8 out
of 36 in the Apo [Fefe]-Hydrogenase Cpi
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Apo [Fefe]-Hydrogenase Cpi within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe602
b:19.3
occ:1.00
|
FE4
|
A:SF4602
|
0.0
|
19.3
|
1.0
|
S1
|
A:SF4602
|
2.3
|
19.5
|
1.0
|
SG
|
A:CYS190
|
2.3
|
19.6
|
1.0
|
S2
|
A:SF4602
|
2.3
|
19.4
|
1.0
|
S3
|
A:SF4602
|
2.3
|
19.3
|
1.0
|
FE2
|
A:SF4602
|
2.7
|
19.1
|
1.0
|
FE3
|
A:SF4602
|
2.7
|
19.1
|
1.0
|
FE1
|
A:SF4602
|
2.8
|
18.9
|
1.0
|
H
|
A:LEU192
|
3.2
|
20.8
|
1.0
|
H
|
A:LEU191
|
3.2
|
22.0
|
1.0
|
HA
|
A:CYS190
|
3.3
|
27.6
|
1.0
|
HB3
|
A:ALA165
|
3.3
|
22.6
|
1.0
|
CB
|
A:CYS190
|
3.4
|
21.2
|
1.0
|
HB2
|
A:CYS190
|
3.5
|
25.5
|
1.0
|
HD11
|
A:LEU140
|
3.7
|
30.7
|
1.0
|
CA
|
A:CYS190
|
3.8
|
23.0
|
1.0
|
N
|
A:LEU191
|
3.8
|
18.4
|
1.0
|
S4
|
A:SF4602
|
3.9
|
19.3
|
1.0
|
HD2
|
A:PHE185
|
3.9
|
24.8
|
1.0
|
N
|
A:LEU192
|
3.9
|
17.4
|
1.0
|
HA
|
A:LEU192
|
4.0
|
21.6
|
1.0
|
HB1
|
A:ALA165
|
4.1
|
22.6
|
1.0
|
CB
|
A:ALA165
|
4.1
|
18.9
|
1.0
|
H
|
A:CYS193
|
4.2
|
20.7
|
1.0
|
C
|
A:CYS190
|
4.2
|
20.2
|
1.0
|
HB3
|
A:CYS190
|
4.2
|
25.5
|
1.0
|
HB2
|
A:ALA165
|
4.5
|
22.6
|
1.0
|
HD23
|
A:LEU192
|
4.5
|
23.5
|
1.0
|
CA
|
A:LEU192
|
4.5
|
18.0
|
1.0
|
H
|
A:GLY194
|
4.5
|
23.2
|
1.0
|
CD1
|
A:LEU140
|
4.6
|
25.6
|
1.0
|
CD2
|
A:PHE185
|
4.6
|
20.7
|
1.0
|
HD12
|
A:LEU140
|
4.7
|
30.7
|
1.0
|
HE2
|
A:PHE185
|
4.8
|
28.3
|
1.0
|
SG
|
A:CYS157
|
4.8
|
19.8
|
1.0
|
HB2
|
A:LEU191
|
4.8
|
20.6
|
1.0
|
N
|
A:CYS193
|
4.8
|
17.3
|
1.0
|
SG
|
A:CYS196
|
4.8
|
19.1
|
1.0
|
CA
|
A:LEU191
|
4.8
|
19.0
|
1.0
|
HD13
|
A:LEU140
|
4.8
|
30.7
|
1.0
|
C
|
A:LEU191
|
4.9
|
19.1
|
1.0
|
HB3
|
A:PHE185
|
4.9
|
23.9
|
1.0
|
HB2
|
A:MET166
|
5.0
|
23.9
|
1.0
|
|
Iron binding site 9 out
of 36 in 4xdd
Go back to
Iron Binding Sites List in 4xdd
Iron binding site 9 out
of 36 in the Apo [Fefe]-Hydrogenase Cpi
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Apo [Fefe]-Hydrogenase Cpi within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe603
b:20.0
occ:1.00
|
FE1
|
A:SF4603
|
0.0
|
20.0
|
1.0
|
S2
|
A:SF4603
|
2.3
|
20.7
|
1.0
|
S4
|
A:SF4603
|
2.3
|
20.6
|
1.0
|
S3
|
A:SF4603
|
2.3
|
19.2
|
1.0
|
SG
|
A:CYS200
|
2.3
|
21.0
|
1.0
|
FE4
|
A:SF4603
|
2.7
|
20.3
|
1.0
|
FE3
|
A:SF4603
|
2.7
|
20.4
|
1.0
|
FE2
|
A:SF4603
|
2.8
|
20.7
|
1.0
|
HD2
|
A:PRO201
|
3.0
|
24.8
|
1.0
|
HB3
|
A:ALA204
|
3.0
|
26.6
|
1.0
|
HA
|
A:CYS200
|
3.4
|
24.3
|
1.0
|
HB2
|
A:CYS200
|
3.4
|
22.5
|
1.0
|
CB
|
A:CYS200
|
3.4
|
18.8
|
1.0
|
HG22
|
A:VAL202
|
3.8
|
25.7
|
1.0
|
HG
|
A:LEU205
|
3.8
|
22.6
|
1.0
|
S1
|
A:SF4603
|
3.9
|
20.5
|
1.0
|
CB
|
A:ALA204
|
3.9
|
22.2
|
1.0
|
CA
|
A:CYS200
|
3.9
|
20.2
|
1.0
|
CD
|
A:PRO201
|
4.0
|
20.6
|
1.0
|
HG23
|
A:VAL202
|
4.0
|
25.7
|
1.0
|
HD12
|
A:LEU205
|
4.1
|
27.4
|
1.0
|
HB2
|
A:ALA204
|
4.2
|
26.6
|
1.0
|
HB1
|
A:ALA204
|
4.2
|
26.6
|
1.0
|
HB3
|
A:CYS153
|
4.2
|
23.2
|
1.0
|
HB3
|
A:CYS200
|
4.3
|
22.5
|
1.0
|
CG2
|
A:VAL202
|
4.3
|
21.4
|
1.0
|
HD3
|
A:PRO201
|
4.3
|
24.8
|
1.0
|
H
|
A:VAL202
|
4.4
|
26.9
|
1.0
|
H
|
A:LEU205
|
4.4
|
23.1
|
1.0
|
HA
|
A:CYS147
|
4.4
|
23.9
|
1.0
|
HG21
|
A:VAL202
|
4.6
|
25.7
|
1.0
|
H
|
A:LEU148
|
4.6
|
27.3
|
1.0
|
HD11
|
A:LEU205
|
4.6
|
27.4
|
1.0
|
CG
|
A:LEU205
|
4.6
|
18.9
|
1.0
|
H
|
A:ALA204
|
4.6
|
24.6
|
1.0
|
CD1
|
A:LEU205
|
4.6
|
22.8
|
1.0
|
N
|
A:PRO201
|
4.6
|
18.6
|
1.0
|
HG2
|
A:PRO201
|
4.7
|
25.8
|
1.0
|
C
|
A:CYS200
|
4.7
|
18.4
|
1.0
|
SG
|
A:CYS150
|
4.7
|
21.8
|
1.0
|
HB2
|
A:LEU205
|
4.7
|
25.7
|
1.0
|
SG
|
A:CYS153
|
4.8
|
19.2
|
1.0
|
H
|
A:CYS153
|
4.8
|
22.2
|
1.0
|
CG
|
A:PRO201
|
4.9
|
21.5
|
1.0
|
N
|
A:LEU205
|
4.9
|
19.2
|
1.0
|
SG
|
A:CYS147
|
4.9
|
20.6
|
1.0
|
CB
|
A:CYS153
|
5.0
|
19.4
|
1.0
|
|
Iron binding site 10 out
of 36 in 4xdd
Go back to
Iron Binding Sites List in 4xdd
Iron binding site 10 out
of 36 in the Apo [Fefe]-Hydrogenase Cpi
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Apo [Fefe]-Hydrogenase Cpi within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe603
b:20.7
occ:1.00
|
FE2
|
A:SF4603
|
0.0
|
20.7
|
1.0
|
S3
|
A:SF4603
|
2.3
|
19.2
|
1.0
|
SG
|
A:CYS150
|
2.3
|
21.8
|
1.0
|
S1
|
A:SF4603
|
2.3
|
20.5
|
1.0
|
S4
|
A:SF4603
|
2.3
|
20.6
|
1.0
|
FE4
|
A:SF4603
|
2.7
|
20.3
|
1.0
|
H
|
A:CYS150
|
2.8
|
27.3
|
1.0
|
FE3
|
A:SF4603
|
2.8
|
20.4
|
1.0
|
FE1
|
A:SF4603
|
2.8
|
20.0
|
1.0
|
H
|
A:GLY151
|
3.3
|
25.3
|
1.0
|
H
|
A:ARG152
|
3.4
|
25.8
|
1.0
|
HD2
|
A:PRO201
|
3.4
|
24.8
|
1.0
|
N
|
A:CYS150
|
3.5
|
22.7
|
1.0
|
CB
|
A:CYS150
|
3.6
|
23.3
|
1.0
|
HB3
|
A:CYS150
|
3.7
|
27.9
|
1.0
|
HB2
|
A:ARG152
|
3.8
|
23.7
|
1.0
|
N
|
A:GLY151
|
3.8
|
21.1
|
1.0
|
S2
|
A:SF4603
|
3.9
|
20.7
|
1.0
|
CA
|
A:CYS150
|
3.9
|
20.8
|
1.0
|
H
|
A:CYS153
|
4.0
|
22.2
|
1.0
|
H
|
A:LEU148
|
4.0
|
27.3
|
1.0
|
HD3
|
A:PRO201
|
4.1
|
24.8
|
1.0
|
N
|
A:ARG152
|
4.1
|
21.5
|
1.0
|
CD
|
A:PRO201
|
4.1
|
20.6
|
1.0
|
H
|
A:LEU149
|
4.2
|
25.4
|
1.0
|
HB2
|
A:LEU148
|
4.2
|
25.5
|
1.0
|
C
|
A:CYS150
|
4.2
|
21.6
|
1.0
|
HB2
|
A:CYS150
|
4.4
|
27.9
|
1.0
|
HA
|
A:CYS200
|
4.4
|
24.3
|
1.0
|
N
|
A:LEU149
|
4.4
|
21.1
|
1.0
|
HG3
|
A:PRO201
|
4.4
|
25.8
|
1.0
|
HA
|
A:LEU149
|
4.5
|
25.7
|
1.0
|
HG2
|
A:PRO201
|
4.6
|
25.8
|
1.0
|
C
|
A:LEU149
|
4.6
|
23.5
|
1.0
|
CG
|
A:PRO201
|
4.6
|
21.5
|
1.0
|
CB
|
A:ARG152
|
4.7
|
19.7
|
1.0
|
N
|
A:LEU148
|
4.8
|
22.7
|
1.0
|
SG
|
A:CYS153
|
4.8
|
19.2
|
1.0
|
CA
|
A:LEU149
|
4.8
|
21.4
|
1.0
|
CA
|
A:GLY151
|
4.8
|
20.9
|
1.0
|
SG
|
A:CYS200
|
4.8
|
21.0
|
1.0
|
SG
|
A:CYS147
|
4.8
|
20.6
|
1.0
|
N
|
A:CYS153
|
4.8
|
18.5
|
1.0
|
HD3
|
A:ARG152
|
4.8
|
25.4
|
1.0
|
HA
|
A:CYS150
|
4.9
|
25.0
|
1.0
|
C
|
A:GLY151
|
4.9
|
24.2
|
1.0
|
HG22
|
A:VAL202
|
4.9
|
25.7
|
1.0
|
HA2
|
A:GLY151
|
4.9
|
25.0
|
1.0
|
CA
|
A:ARG152
|
4.9
|
20.0
|
1.0
|
HB3
|
A:CYS153
|
5.0
|
23.2
|
1.0
|
|
Reference:
J.Esselborn,
N.Muraki,
K.Klein,
V.Engelbrecht,
N.Metzler-Nolte,
U.P.Apfel,
E.Hofmann,
G.Kurisu,
T.Happe.
A Structural View of Synthetic Cofactor Integration Into [Fefe]-Hydrogenases. Chem Sci V. 7 959 2016.
ISSN: ISSN 2041-6520
PubMed: 29896366
DOI: 10.1039/C5SC03397G
Page generated: Mon Aug 5 15:27:26 2024
|