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Iron in PDB 5gth: Native Xfel Structure of Photosystem II (Dark Dataset)
Enzymatic activity of Native Xfel Structure of Photosystem II (Dark Dataset)
All present enzymatic activity of Native Xfel Structure of Photosystem II (Dark Dataset):
1.10.3.9;
1.10.3.9;
Protein crystallography data
The structure of Native Xfel Structure of Photosystem II (Dark Dataset), PDB code: 5gth
was solved by
M.Suga,
J.R.Shen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 19.98 / 2.50 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 126.520, 231.230, 287.460, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 13.9 / 18.6 |
Other elements in 5gth:
The structure of Native Xfel Structure of Photosystem II (Dark Dataset) also contains other interesting chemical elements:
| Magnesium | (Mg) | 72 atoms |
| Manganese | (Mn) | 8 atoms |
| Calcium | (Ca) | 8 atoms |
| Chlorine | (Cl) | 4 atoms |
Iron Binding Sites:
The binding sites of Iron atom in the Native Xfel Structure of Photosystem II (Dark Dataset)
(pdb code 5gth). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Native Xfel Structure of Photosystem II (Dark Dataset), PDB code: 5gth:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Iron where determined in the Native Xfel Structure of Photosystem II (Dark Dataset), PDB code: 5gth:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;
Iron binding site 1 out of 6 in 5gth
Go back to
Iron Binding Sites List in 5gth
Iron binding site 1 out
of 6 in the Native Xfel Structure of Photosystem II (Dark Dataset)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Native Xfel Structure of Photosystem II (Dark Dataset) within 5.0Å range:
|
Iron binding site 2 out of 6 in 5gth
Go back to
Iron Binding Sites List in 5gth
Iron binding site 2 out
of 6 in the Native Xfel Structure of Photosystem II (Dark Dataset)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Native Xfel Structure of Photosystem II (Dark Dataset) within 5.0Å range:
|
Iron binding site 3 out of 6 in 5gth
Go back to
Iron Binding Sites List in 5gth
Iron binding site 3 out
of 6 in the Native Xfel Structure of Photosystem II (Dark Dataset)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Native Xfel Structure of Photosystem II (Dark Dataset) within 5.0Å range:
|
Iron binding site 4 out of 6 in 5gth
Go back to
Iron Binding Sites List in 5gth
Iron binding site 4 out
of 6 in the Native Xfel Structure of Photosystem II (Dark Dataset)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Native Xfel Structure of Photosystem II (Dark Dataset) within 5.0Å range:
|
Iron binding site 5 out of 6 in 5gth
Go back to
Iron Binding Sites List in 5gth
Iron binding site 5 out
of 6 in the Native Xfel Structure of Photosystem II (Dark Dataset)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Native Xfel Structure of Photosystem II (Dark Dataset) within 5.0Å range:
|
Iron binding site 6 out of 6 in 5gth
Go back to
Iron Binding Sites List in 5gth
Iron binding site 6 out
of 6 in the Native Xfel Structure of Photosystem II (Dark Dataset)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Native Xfel Structure of Photosystem II (Dark Dataset) within 5.0Å range:
|
Reference:
M.Suga,
F.Akita,
M.Sugahara,
M.Kubo,
Y.Nakajima,
T.Nakane,
K.Yamashita,
Y.Umena,
M.Nakabayashi,
T.Yamane,
T.Nakano,
M.Suzuki,
T.Masuda,
S.Inoue,
T.Kimura,
T.Nomura,
S.Yonekura,
L.J.Yu,
T.Sakamoto,
T.Motomura,
J.H.Chen,
Y.Kato,
T.Noguchi,
K.Tono,
Y.Joti,
T.Kameshima,
T.Hatsui,
E.Nango,
R.Tanaka,
H.Naitow,
Y.Matsuura,
A.Yamashita,
M.Yamamoto,
O.Nureki,
M.Yabashi,
T.Ishikawa,
S.Iwata,
J.R.Shen.
Light-Induced Structural Changes and the Site of O=O Bond Formation in Psii Caught By Xfel. Nature V. 543 131 2017.
ISSN: ESSN 1476-4687
PubMed: 28219079
DOI: 10.1038/NATURE21400
Page generated: Tue Aug 6 01:35:23 2024
ISSN: ESSN 1476-4687
PubMed: 28219079
DOI: 10.1038/NATURE21400
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