Iron in PDB 5guw: Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa
Enzymatic activity of Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa
All present enzymatic activity of Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa:
1.7.2.1;
1.7.2.5;
1.7.99.1;
Protein crystallography data
The structure of Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa, PDB code: 5guw
was solved by
E.Terasaka,
H.Sugimoto,
Y.Shiro,
T.Tosha,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.48 /
3.20
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
111.871,
128.606,
127.807,
90.00,
106.83,
90.00
|
R / Rfree (%)
|
21 /
25.4
|
Other elements in 5guw:
The structure of Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa
(pdb code 5guw). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa, PDB code: 5guw:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 5guw
Go back to
Iron Binding Sites List in 5guw
Iron binding site 1 out
of 12 in the Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:43.9
occ:1.00
|
FE
|
A:HEC201
|
0.0
|
43.9
|
1.0
|
NE2
|
A:HIS65
|
2.0
|
49.7
|
1.0
|
ND
|
A:HEC201
|
2.0
|
44.3
|
1.0
|
NA
|
A:HEC201
|
2.0
|
44.5
|
1.0
|
NC
|
A:HEC201
|
2.1
|
44.6
|
1.0
|
NB
|
A:HEC201
|
2.1
|
44.1
|
1.0
|
SD
|
A:MET112
|
2.3
|
51.0
|
1.0
|
CE1
|
A:HIS65
|
2.9
|
49.9
|
1.0
|
C1D
|
A:HEC201
|
3.0
|
46.4
|
1.0
|
C4C
|
A:HEC201
|
3.0
|
46.9
|
1.0
|
C4A
|
A:HEC201
|
3.0
|
46.1
|
1.0
|
C1B
|
A:HEC201
|
3.0
|
45.8
|
1.0
|
C4D
|
A:HEC201
|
3.1
|
44.5
|
1.0
|
CD2
|
A:HIS65
|
3.1
|
49.1
|
1.0
|
C1A
|
A:HEC201
|
3.1
|
45.4
|
1.0
|
C1C
|
A:HEC201
|
3.1
|
44.7
|
1.0
|
C4B
|
A:HEC201
|
3.2
|
44.0
|
1.0
|
CE
|
A:MET112
|
3.3
|
51.5
|
1.0
|
CHD
|
A:HEC201
|
3.3
|
48.1
|
1.0
|
CHB
|
A:HEC201
|
3.4
|
46.9
|
1.0
|
CHA
|
A:HEC201
|
3.4
|
44.9
|
1.0
|
CHC
|
A:HEC201
|
3.5
|
44.0
|
1.0
|
CG
|
A:MET112
|
3.6
|
51.8
|
1.0
|
ND1
|
A:HIS65
|
4.0
|
50.0
|
1.0
|
CG
|
A:HIS65
|
4.2
|
49.3
|
1.0
|
C3A
|
A:HEC201
|
4.3
|
48.5
|
1.0
|
C3D
|
A:HEC201
|
4.3
|
46.1
|
1.0
|
C2D
|
A:HEC201
|
4.3
|
47.7
|
1.0
|
C2A
|
A:HEC201
|
4.3
|
48.0
|
1.0
|
C2B
|
A:HEC201
|
4.3
|
47.2
|
1.0
|
C3C
|
A:HEC201
|
4.3
|
49.1
|
1.0
|
C2C
|
A:HEC201
|
4.3
|
47.2
|
1.0
|
CB
|
A:MET112
|
4.3
|
52.4
|
1.0
|
C3B
|
A:HEC201
|
4.4
|
45.4
|
1.0
|
NE1
|
A:TRP98
|
4.7
|
51.1
|
1.0
|
CB
|
A:ALA75
|
4.9
|
48.9
|
1.0
|
|
Iron binding site 2 out
of 12 in 5guw
Go back to
Iron Binding Sites List in 5guw
Iron binding site 2 out
of 12 in the Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe801
b:43.2
occ:1.00
|
FE
|
B:HEM801
|
0.0
|
43.2
|
1.0
|
ND
|
B:HEM801
|
1.9
|
44.7
|
1.0
|
NA
|
B:HEM801
|
2.0
|
43.2
|
1.0
|
NC
|
B:HEM801
|
2.1
|
44.4
|
1.0
|
NE2
|
B:HIS60
|
2.1
|
42.1
|
1.0
|
NE2
|
B:HIS349
|
2.1
|
49.7
|
1.0
|
NB
|
B:HEM801
|
2.1
|
44.3
|
1.0
|
CE1
|
B:HIS349
|
2.9
|
50.9
|
1.0
|
C4D
|
B:HEM801
|
2.9
|
45.7
|
1.0
|
C1D
|
B:HEM801
|
2.9
|
46.6
|
1.0
|
C1A
|
B:HEM801
|
3.0
|
43.6
|
1.0
|
CE1
|
B:HIS60
|
3.0
|
41.7
|
1.0
|
C1C
|
B:HEM801
|
3.1
|
45.3
|
1.0
|
CD2
|
B:HIS60
|
3.1
|
41.7
|
1.0
|
CD2
|
B:HIS349
|
3.1
|
50.2
|
1.0
|
C4C
|
B:HEM801
|
3.1
|
45.5
|
1.0
|
C4A
|
B:HEM801
|
3.1
|
43.6
|
1.0
|
C4B
|
B:HEM801
|
3.2
|
45.8
|
1.0
|
C1B
|
B:HEM801
|
3.2
|
45.5
|
1.0
|
CHA
|
B:HEM801
|
3.2
|
45.0
|
1.0
|
CHD
|
B:HEM801
|
3.4
|
46.6
|
1.0
|
CHC
|
B:HEM801
|
3.4
|
46.1
|
1.0
|
CHB
|
B:HEM801
|
3.6
|
45.0
|
1.0
|
ND1
|
B:HIS349
|
3.9
|
50.8
|
1.0
|
CG
|
B:HIS349
|
4.1
|
50.3
|
1.0
|
ND1
|
B:HIS60
|
4.1
|
41.8
|
1.0
|
C3D
|
B:HEM801
|
4.1
|
49.4
|
1.0
|
C2D
|
B:HEM801
|
4.1
|
49.6
|
1.0
|
CG
|
B:HIS60
|
4.2
|
41.9
|
1.0
|
C2A
|
B:HEM801
|
4.3
|
43.3
|
1.0
|
C3A
|
B:HEM801
|
4.3
|
43.6
|
1.0
|
C3C
|
B:HEM801
|
4.3
|
46.7
|
1.0
|
C2C
|
B:HEM801
|
4.3
|
46.4
|
1.0
|
C3B
|
B:HEM801
|
4.4
|
48.1
|
1.0
|
C2B
|
B:HEM801
|
4.5
|
48.2
|
1.0
|
NE2
|
B:GLN30
|
4.6
|
54.6
|
1.0
|
|
Iron binding site 3 out
of 12 in 5guw
Go back to
Iron Binding Sites List in 5guw
Iron binding site 3 out
of 12 in the Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe802
b:51.6
occ:1.00
|
FE
|
B:HEM802
|
0.0
|
51.6
|
1.0
|
ND
|
B:HEM802
|
2.0
|
56.7
|
1.0
|
NA
|
B:HEM802
|
2.0
|
54.4
|
1.0
|
NC
|
B:HEM802
|
2.1
|
52.6
|
1.0
|
O
|
B:O804
|
2.1
|
33.8
|
1.0
|
NB
|
B:HEM802
|
2.1
|
52.8
|
1.0
|
NE2
|
B:HIS347
|
2.2
|
63.4
|
1.0
|
C4D
|
B:HEM802
|
2.9
|
59.0
|
1.0
|
C1D
|
B:HEM802
|
3.0
|
58.2
|
1.0
|
CE1
|
B:HIS347
|
3.1
|
62.7
|
1.0
|
C1A
|
B:HEM802
|
3.1
|
56.3
|
1.0
|
C4C
|
B:HEM802
|
3.1
|
54.8
|
1.0
|
C1C
|
B:HEM802
|
3.1
|
52.0
|
1.0
|
C4A
|
B:HEM802
|
3.1
|
56.2
|
1.0
|
C1B
|
B:HEM802
|
3.1
|
54.5
|
1.0
|
C4B
|
B:HEM802
|
3.1
|
51.6
|
1.0
|
CD2
|
B:HIS347
|
3.2
|
61.9
|
1.0
|
CHA
|
B:HEM802
|
3.3
|
58.2
|
1.0
|
CHD
|
B:HEM802
|
3.4
|
58.1
|
1.0
|
CHB
|
B:HEM802
|
3.4
|
56.8
|
1.0
|
CHC
|
B:HEM802
|
3.5
|
51.4
|
1.0
|
OE2
|
B:GLU211
|
4.1
|
83.0
|
1.0
|
FE
|
B:FE803
|
4.2
|
47.1
|
1.0
|
C3D
|
B:HEM802
|
4.2
|
62.5
|
1.0
|
C2D
|
B:HEM802
|
4.2
|
62.5
|
1.0
|
ND1
|
B:HIS347
|
4.2
|
61.7
|
1.0
|
OE1
|
B:GLU211
|
4.3
|
82.4
|
1.0
|
C3C
|
B:HEM802
|
4.3
|
54.9
|
1.0
|
C2C
|
B:HEM802
|
4.3
|
52.5
|
1.0
|
C3A
|
B:HEM802
|
4.3
|
57.6
|
1.0
|
C2A
|
B:HEM802
|
4.3
|
57.2
|
1.0
|
C2B
|
B:HEM802
|
4.3
|
55.2
|
1.0
|
C3B
|
B:HEM802
|
4.3
|
52.5
|
1.0
|
CD
|
B:GLU211
|
4.3
|
79.8
|
1.0
|
CG
|
B:HIS347
|
4.3
|
61.1
|
1.0
|
CE1
|
B:HIS259
|
4.7
|
66.9
|
1.0
|
CE1
|
B:HIS258
|
4.7
|
69.6
|
1.0
|
|
Iron binding site 4 out
of 12 in 5guw
Go back to
Iron Binding Sites List in 5guw
Iron binding site 4 out
of 12 in the Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe803
b:47.1
occ:1.00
|
ND1
|
B:HIS207
|
2.1
|
67.8
|
1.0
|
OE2
|
B:GLU211
|
2.1
|
83.0
|
1.0
|
NE2
|
B:HIS258
|
2.2
|
71.5
|
1.0
|
NE2
|
B:HIS259
|
2.2
|
69.5
|
1.0
|
O
|
B:O804
|
2.2
|
33.8
|
1.0
|
OE1
|
B:GLU211
|
2.6
|
82.4
|
1.0
|
CD
|
B:GLU211
|
2.6
|
79.8
|
1.0
|
CE1
|
B:HIS207
|
2.8
|
67.0
|
1.0
|
CE1
|
B:HIS258
|
2.9
|
69.6
|
1.0
|
CE1
|
B:HIS259
|
3.0
|
66.9
|
1.0
|
CD2
|
B:HIS259
|
3.1
|
68.6
|
1.0
|
CG
|
B:HIS207
|
3.3
|
65.6
|
1.0
|
CD2
|
B:HIS258
|
3.4
|
71.0
|
1.0
|
CB
|
B:HIS207
|
3.9
|
64.6
|
1.0
|
NE2
|
B:HIS207
|
4.0
|
66.8
|
1.0
|
ND1
|
B:HIS259
|
4.0
|
66.5
|
1.0
|
ND1
|
B:HIS258
|
4.1
|
70.3
|
1.0
|
CG
|
B:GLU211
|
4.1
|
76.8
|
1.0
|
CG
|
B:HIS259
|
4.1
|
67.6
|
1.0
|
FE
|
B:HEM802
|
4.2
|
51.6
|
1.0
|
CD2
|
B:HIS207
|
4.3
|
66.1
|
1.0
|
CG
|
B:HIS258
|
4.3
|
70.5
|
1.0
|
ND
|
B:HEM802
|
4.3
|
56.7
|
1.0
|
NC
|
B:HEM802
|
4.4
|
52.6
|
1.0
|
CB
|
B:GLU211
|
4.6
|
75.9
|
1.0
|
CA
|
B:HIS207
|
4.6
|
63.2
|
1.0
|
C1D
|
B:HEM802
|
4.7
|
58.2
|
1.0
|
C4C
|
B:HEM802
|
4.8
|
54.8
|
1.0
|
C4D
|
B:HEM802
|
4.8
|
59.0
|
1.0
|
OE1
|
B:GLU280
|
4.8
|
85.3
|
1.0
|
C1C
|
B:HEM802
|
4.9
|
52.0
|
1.0
|
CHD
|
B:HEM802
|
4.9
|
58.1
|
1.0
|
|
Iron binding site 5 out
of 12 in 5guw
Go back to
Iron Binding Sites List in 5guw
Iron binding site 5 out
of 12 in the Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:22.2
occ:1.00
|
FE
|
C:HEC201
|
0.0
|
22.2
|
1.0
|
NE2
|
C:HIS65
|
2.0
|
34.3
|
1.0
|
NB
|
C:HEC201
|
2.0
|
22.5
|
1.0
|
NA
|
C:HEC201
|
2.0
|
23.2
|
1.0
|
NC
|
C:HEC201
|
2.1
|
22.6
|
1.0
|
ND
|
C:HEC201
|
2.1
|
23.2
|
1.0
|
SD
|
C:MET112
|
2.3
|
37.8
|
1.0
|
CE1
|
C:HIS65
|
2.9
|
34.4
|
1.0
|
C1B
|
C:HEC201
|
3.0
|
23.7
|
1.0
|
C1A
|
C:HEC201
|
3.0
|
24.2
|
1.0
|
C4B
|
C:HEC201
|
3.0
|
23.0
|
1.0
|
C4A
|
C:HEC201
|
3.0
|
24.2
|
1.0
|
C4D
|
C:HEC201
|
3.1
|
24.3
|
1.0
|
CD2
|
C:HIS65
|
3.1
|
34.2
|
1.0
|
C1C
|
C:HEC201
|
3.1
|
23.0
|
1.0
|
C1D
|
C:HEC201
|
3.1
|
24.4
|
1.0
|
C4C
|
C:HEC201
|
3.1
|
23.8
|
1.0
|
CE
|
C:MET112
|
3.3
|
38.4
|
1.0
|
CHB
|
C:HEC201
|
3.4
|
24.5
|
1.0
|
CHA
|
C:HEC201
|
3.4
|
24.7
|
1.0
|
CHC
|
C:HEC201
|
3.4
|
23.1
|
1.0
|
CHD
|
C:HEC201
|
3.4
|
24.7
|
1.0
|
CG
|
C:MET112
|
3.5
|
39.1
|
1.0
|
ND1
|
C:HIS65
|
4.1
|
34.3
|
1.0
|
CG
|
C:HIS65
|
4.2
|
34.2
|
1.0
|
C2A
|
C:HEC201
|
4.2
|
26.0
|
1.0
|
C3A
|
C:HEC201
|
4.2
|
26.0
|
1.0
|
C2B
|
C:HEC201
|
4.3
|
25.1
|
1.0
|
C3B
|
C:HEC201
|
4.3
|
24.6
|
1.0
|
CB
|
C:MET112
|
4.3
|
39.8
|
1.0
|
C3D
|
C:HEC201
|
4.3
|
26.2
|
1.0
|
C2C
|
C:HEC201
|
4.3
|
24.6
|
1.0
|
C2D
|
C:HEC201
|
4.3
|
26.4
|
1.0
|
C3C
|
C:HEC201
|
4.3
|
25.2
|
1.0
|
CB
|
C:ALA75
|
4.9
|
34.8
|
1.0
|
NE1
|
C:TRP98
|
4.9
|
40.0
|
1.0
|
|
Iron binding site 6 out
of 12 in 5guw
Go back to
Iron Binding Sites List in 5guw
Iron binding site 6 out
of 12 in the Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe801
b:37.6
occ:1.00
|
FE
|
D:HEM801
|
0.0
|
37.6
|
1.0
|
NA
|
D:HEM801
|
2.0
|
37.4
|
1.0
|
NB
|
D:HEM801
|
2.0
|
38.9
|
1.0
|
ND
|
D:HEM801
|
2.0
|
37.8
|
1.0
|
NE2
|
D:HIS349
|
2.0
|
38.9
|
1.0
|
NE2
|
D:HIS60
|
2.1
|
33.2
|
1.0
|
NC
|
D:HEM801
|
2.1
|
38.4
|
1.0
|
CE1
|
D:HIS60
|
2.9
|
33.8
|
1.0
|
CE1
|
D:HIS349
|
2.9
|
38.6
|
1.0
|
C4A
|
D:HEM801
|
3.0
|
38.2
|
1.0
|
CD2
|
D:HIS349
|
3.0
|
39.1
|
1.0
|
C1B
|
D:HEM801
|
3.0
|
39.9
|
1.0
|
C1D
|
D:HEM801
|
3.0
|
38.7
|
1.0
|
C4D
|
D:HEM801
|
3.0
|
37.8
|
1.0
|
C1A
|
D:HEM801
|
3.1
|
37.1
|
1.0
|
C1C
|
D:HEM801
|
3.1
|
39.0
|
1.0
|
C4B
|
D:HEM801
|
3.1
|
39.8
|
1.0
|
CD2
|
D:HIS60
|
3.1
|
33.3
|
1.0
|
C4C
|
D:HEM801
|
3.2
|
39.0
|
1.0
|
CHB
|
D:HEM801
|
3.3
|
39.5
|
1.0
|
CHC
|
D:HEM801
|
3.4
|
39.6
|
1.0
|
CHA
|
D:HEM801
|
3.5
|
37.3
|
1.0
|
CHD
|
D:HEM801
|
3.5
|
39.2
|
1.0
|
ND1
|
D:HIS349
|
4.0
|
38.9
|
1.0
|
CG
|
D:HIS349
|
4.0
|
39.2
|
1.0
|
ND1
|
D:HIS60
|
4.0
|
34.2
|
1.0
|
C3A
|
D:HEM801
|
4.2
|
38.1
|
1.0
|
CG
|
D:HIS60
|
4.2
|
33.9
|
1.0
|
C2A
|
D:HEM801
|
4.3
|
37.4
|
1.0
|
C2D
|
D:HEM801
|
4.3
|
39.9
|
1.0
|
C3D
|
D:HEM801
|
4.3
|
39.3
|
1.0
|
C2B
|
D:HEM801
|
4.3
|
41.7
|
1.0
|
C3B
|
D:HEM801
|
4.3
|
41.4
|
1.0
|
C2C
|
D:HEM801
|
4.3
|
39.8
|
1.0
|
C3C
|
D:HEM801
|
4.3
|
39.6
|
1.0
|
NE2
|
D:GLN30
|
4.6
|
42.7
|
1.0
|
|
Iron binding site 7 out
of 12 in 5guw
Go back to
Iron Binding Sites List in 5guw
Iron binding site 7 out
of 12 in the Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe802
b:43.1
occ:1.00
|
FE
|
D:HEM802
|
0.0
|
43.1
|
1.0
|
ND
|
D:HEM802
|
1.9
|
43.6
|
1.0
|
NC
|
D:HEM802
|
2.0
|
42.5
|
1.0
|
NA
|
D:HEM802
|
2.0
|
43.9
|
1.0
|
O
|
D:O804
|
2.1
|
12.0
|
1.0
|
NB
|
D:HEM802
|
2.1
|
43.2
|
1.0
|
NE2
|
D:HIS347
|
2.2
|
41.3
|
1.0
|
C4D
|
D:HEM802
|
2.9
|
44.4
|
1.0
|
C1D
|
D:HEM802
|
3.0
|
43.8
|
1.0
|
C1A
|
D:HEM802
|
3.0
|
44.4
|
1.0
|
C4C
|
D:HEM802
|
3.0
|
42.5
|
1.0
|
C1C
|
D:HEM802
|
3.0
|
42.2
|
1.0
|
CE1
|
D:HIS347
|
3.1
|
41.2
|
1.0
|
C4B
|
D:HEM802
|
3.1
|
43.0
|
1.0
|
C4A
|
D:HEM802
|
3.2
|
44.5
|
1.0
|
C1B
|
D:HEM802
|
3.2
|
44.0
|
1.0
|
CHA
|
D:HEM802
|
3.2
|
44.5
|
1.0
|
CD2
|
D:HIS347
|
3.3
|
40.9
|
1.0
|
CHD
|
D:HEM802
|
3.3
|
43.3
|
1.0
|
CHC
|
D:HEM802
|
3.5
|
42.5
|
1.0
|
CHB
|
D:HEM802
|
3.6
|
44.7
|
1.0
|
FE
|
D:FE803
|
4.0
|
19.6
|
1.0
|
OE2
|
D:GLU211
|
4.1
|
45.1
|
1.0
|
C2D
|
D:HEM802
|
4.2
|
44.9
|
1.0
|
C3D
|
D:HEM802
|
4.2
|
45.2
|
1.0
|
OE1
|
D:GLU211
|
4.2
|
43.8
|
1.0
|
ND1
|
D:HIS347
|
4.2
|
41.2
|
1.0
|
C3C
|
D:HEM802
|
4.2
|
41.9
|
1.0
|
C2C
|
D:HEM802
|
4.3
|
41.8
|
1.0
|
C2A
|
D:HEM802
|
4.3
|
45.1
|
1.0
|
CD
|
D:GLU211
|
4.3
|
43.8
|
1.0
|
C3A
|
D:HEM802
|
4.3
|
45.2
|
1.0
|
C3B
|
D:HEM802
|
4.4
|
43.7
|
1.0
|
C2B
|
D:HEM802
|
4.4
|
44.4
|
1.0
|
CG
|
D:HIS347
|
4.4
|
40.9
|
1.0
|
CE1
|
D:HIS258
|
4.7
|
44.9
|
1.0
|
CE1
|
D:HIS259
|
4.7
|
45.6
|
1.0
|
NE2
|
D:HIS259
|
5.0
|
45.7
|
1.0
|
|
Iron binding site 8 out
of 12 in 5guw
Go back to
Iron Binding Sites List in 5guw
Iron binding site 8 out
of 12 in the Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe803
b:19.6
occ:1.00
|
OE2
|
D:GLU211
|
2.1
|
45.1
|
1.0
|
ND1
|
D:HIS207
|
2.1
|
47.3
|
1.0
|
NE2
|
D:HIS259
|
2.2
|
45.7
|
1.0
|
NE2
|
D:HIS258
|
2.2
|
45.6
|
1.0
|
O
|
D:O804
|
2.2
|
12.0
|
1.0
|
OE1
|
D:GLU211
|
2.6
|
43.8
|
1.0
|
CD
|
D:GLU211
|
2.6
|
43.8
|
1.0
|
CE1
|
D:HIS207
|
2.8
|
47.3
|
1.0
|
CE1
|
D:HIS258
|
2.9
|
44.9
|
1.0
|
CE1
|
D:HIS259
|
2.9
|
45.6
|
1.0
|
CD2
|
D:HIS259
|
3.1
|
45.3
|
1.0
|
CG
|
D:HIS207
|
3.3
|
46.7
|
1.0
|
CD2
|
D:HIS258
|
3.4
|
45.5
|
1.0
|
CB
|
D:HIS207
|
3.9
|
46.2
|
1.0
|
ND1
|
D:HIS259
|
4.0
|
45.7
|
1.0
|
NE2
|
D:HIS207
|
4.0
|
47.5
|
1.0
|
FE
|
D:HEM802
|
4.0
|
43.1
|
1.0
|
CG
|
D:GLU211
|
4.1
|
43.7
|
1.0
|
ND1
|
D:HIS258
|
4.1
|
45.6
|
1.0
|
CG
|
D:HIS259
|
4.1
|
45.5
|
1.0
|
NC
|
D:HEM802
|
4.1
|
42.5
|
1.0
|
ND
|
D:HEM802
|
4.2
|
43.6
|
1.0
|
CD2
|
D:HIS207
|
4.3
|
47.2
|
1.0
|
CG
|
D:HIS258
|
4.4
|
46.0
|
1.0
|
C4C
|
D:HEM802
|
4.4
|
42.5
|
1.0
|
C1D
|
D:HEM802
|
4.5
|
43.8
|
1.0
|
CHD
|
D:HEM802
|
4.6
|
43.3
|
1.0
|
CA
|
D:HIS207
|
4.6
|
45.7
|
1.0
|
CB
|
D:GLU211
|
4.6
|
43.9
|
1.0
|
C4D
|
D:HEM802
|
4.8
|
44.4
|
1.0
|
C1C
|
D:HEM802
|
4.8
|
42.2
|
1.0
|
OE1
|
D:GLU280
|
4.8
|
60.2
|
1.0
|
|
Iron binding site 9 out
of 12 in 5guw
Go back to
Iron Binding Sites List in 5guw
Iron binding site 9 out
of 12 in the Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Fe601
b:32.1
occ:1.00
|
FE
|
M:HEC601
|
0.0
|
32.1
|
1.0
|
NE2
|
M:HIS51
|
2.0
|
36.5
|
1.0
|
ND
|
M:HEC601
|
2.0
|
32.9
|
1.0
|
NB
|
M:HEC601
|
2.0
|
33.0
|
1.0
|
NC
|
M:HEC601
|
2.0
|
31.8
|
1.0
|
NA
|
M:HEC601
|
2.1
|
33.3
|
1.0
|
SD
|
M:MET88
|
2.3
|
38.5
|
1.0
|
CE1
|
M:HIS51
|
3.0
|
36.6
|
1.0
|
CD2
|
M:HIS51
|
3.0
|
36.5
|
1.0
|
C4D
|
M:HEC601
|
3.0
|
33.6
|
1.0
|
C1C
|
M:HEC601
|
3.0
|
31.8
|
1.0
|
C1D
|
M:HEC601
|
3.0
|
33.9
|
1.0
|
C1B
|
M:HEC601
|
3.1
|
34.7
|
1.0
|
C4A
|
M:HEC601
|
3.1
|
34.8
|
1.0
|
C4B
|
M:HEC601
|
3.1
|
33.1
|
1.0
|
C4C
|
M:HEC601
|
3.1
|
32.6
|
1.0
|
C1A
|
M:HEC601
|
3.1
|
33.6
|
1.0
|
CE
|
M:MET88
|
3.2
|
38.7
|
1.0
|
CHC
|
M:HEC601
|
3.4
|
32.3
|
1.0
|
CHB
|
M:HEC601
|
3.4
|
35.7
|
1.0
|
CHA
|
M:HEC601
|
3.4
|
33.6
|
1.0
|
CHD
|
M:HEC601
|
3.4
|
33.8
|
1.0
|
CG
|
M:MET88
|
3.5
|
39.5
|
1.0
|
ND1
|
M:HIS51
|
4.1
|
36.7
|
1.0
|
CG
|
M:HIS51
|
4.1
|
36.6
|
1.0
|
CB
|
M:MET88
|
4.2
|
40.1
|
1.0
|
C2C
|
M:HEC601
|
4.3
|
32.3
|
1.0
|
C3D
|
M:HEC601
|
4.3
|
35.4
|
1.0
|
C2D
|
M:HEC601
|
4.3
|
35.8
|
1.0
|
C2B
|
M:HEC601
|
4.3
|
36.4
|
1.0
|
C3C
|
M:HEC601
|
4.3
|
33.0
|
1.0
|
C3A
|
M:HEC601
|
4.3
|
36.1
|
1.0
|
C3B
|
M:HEC601
|
4.3
|
35.4
|
1.0
|
C2A
|
M:HEC601
|
4.3
|
35.0
|
1.0
|
CA
|
M:MET88
|
4.7
|
40.9
|
1.0
|
|
Iron binding site 10 out
of 12 in 5guw
Go back to
Iron Binding Sites List in 5guw
Iron binding site 10 out
of 12 in the Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Complex of Cytochrome CD1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Fe602
b:25.8
occ:1.00
|
FE
|
M:DHE602
|
0.0
|
25.8
|
1.0
|
NA
|
M:DHE602
|
2.0
|
26.1
|
1.0
|
NE2
|
M:HIS182
|
2.0
|
30.9
|
1.0
|
NC
|
M:DHE602
|
2.1
|
26.5
|
1.0
|
NB
|
M:DHE602
|
2.1
|
26.6
|
1.0
|
ND
|
M:DHE602
|
2.1
|
26.1
|
1.0
|
CE1
|
M:HIS182
|
3.0
|
31.5
|
1.0
|
C1A
|
M:DHE602
|
3.1
|
26.7
|
1.0
|
CD2
|
M:HIS182
|
3.1
|
31.0
|
1.0
|
C1C
|
M:DHE602
|
3.1
|
27.6
|
1.0
|
C4B
|
M:DHE602
|
3.1
|
27.8
|
1.0
|
C4D
|
M:DHE602
|
3.1
|
26.8
|
1.0
|
C1B
|
M:DHE602
|
3.1
|
27.0
|
1.0
|
C4C
|
M:DHE602
|
3.1
|
27.0
|
1.0
|
C1D
|
M:DHE602
|
3.1
|
26.6
|
1.0
|
C4A
|
M:DHE602
|
3.1
|
26.5
|
1.0
|
CHC
|
M:DHE602
|
3.4
|
28.3
|
1.0
|
CHA
|
M:DHE602
|
3.4
|
27.2
|
1.0
|
CHD
|
M:DHE602
|
3.5
|
27.0
|
1.0
|
CHB
|
M:DHE602
|
3.5
|
26.8
|
1.0
|
OH
|
N:TYR10
|
3.9
|
55.9
|
1.0
|
ND1
|
M:HIS182
|
4.1
|
31.7
|
1.0
|
CG
|
M:HIS182
|
4.2
|
31.6
|
1.0
|
C2C
|
M:DHE602
|
4.3
|
28.8
|
1.0
|
C2B
|
M:DHE602
|
4.3
|
28.6
|
1.0
|
C2A
|
M:DHE602
|
4.4
|
27.8
|
1.0
|
C3A
|
M:DHE602
|
4.4
|
27.5
|
1.0
|
C3D
|
M:DHE602
|
4.4
|
28.1
|
1.0
|
C2D
|
M:DHE602
|
4.4
|
27.8
|
1.0
|
C3B
|
M:DHE602
|
4.4
|
29.4
|
1.0
|
C3C
|
M:DHE602
|
4.5
|
28.5
|
1.0
|
O2C
|
M:DHE602
|
4.6
|
29.0
|
1.0
|
CZ
|
N:TYR10
|
4.8
|
55.2
|
1.0
|
CE1
|
N:TYR10
|
4.8
|
55.6
|
1.0
|
|
Reference:
E.Terasaka,
K.Yamada,
P.H.Wang,
K.Hosokawa,
R.Yamagiwa,
K.Matsumoto,
S.Ishii,
T.Mori,
K.Yagi,
H.Sawai,
H.Arai,
H.Sugimoto,
Y.Sugita,
Y.Shiro,
T.Tosha.
Dynamics of Nitric Oxide Controlled By Protein Complex in Bacterial System Proc. Natl. Acad. Sci. V. 114 9888 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28847930
DOI: 10.1073/PNAS.1621301114
Page generated: Tue Aug 6 01:36:08 2024
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