Atomistry » Iron » PDB 5ibf-5j84 » 5ikd
Atomistry »
  Iron »
    PDB 5ibf-5j84 »
      5ikd »

Iron in PDB 5ikd: Asymmetric Sulfoxidation By Engineering the Heme Pocket of A Dye- Decolorizing Peroxidase

Enzymatic activity of Asymmetric Sulfoxidation By Engineering the Heme Pocket of A Dye- Decolorizing Peroxidase

All present enzymatic activity of Asymmetric Sulfoxidation By Engineering the Heme Pocket of A Dye- Decolorizing Peroxidase:
1.11.1.19;

Protein crystallography data

The structure of Asymmetric Sulfoxidation By Engineering the Heme Pocket of A Dye- Decolorizing Peroxidase, PDB code: 5ikd was solved by A.Romero, I.Davo-Siguero, A.T.Martinez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.26 / 1.11
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 104.928, 56.065, 82.709, 90.00, 97.03, 90.00
R / Rfree (%) 15 / 15.8

Iron Binding Sites:

The binding sites of Iron atom in the Asymmetric Sulfoxidation By Engineering the Heme Pocket of A Dye- Decolorizing Peroxidase (pdb code 5ikd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Asymmetric Sulfoxidation By Engineering the Heme Pocket of A Dye- Decolorizing Peroxidase, PDB code: 5ikd:

Iron binding site 1 out of 1 in 5ikd

Go back to Iron Binding Sites List in 5ikd
Iron binding site 1 out of 1 in the Asymmetric Sulfoxidation By Engineering the Heme Pocket of A Dye- Decolorizing Peroxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Asymmetric Sulfoxidation By Engineering the Heme Pocket of A Dye- Decolorizing Peroxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:5.7
occ:1.00
 FE A:HEM501 0.0 5.7 1.0
NB A:HEM501 2.0 8.6 1.0
ND A:HEM501 2.0 6.3 1.0
NA A:HEM501 2.1 6.6 1.0
NC A:HEM501 2.1 6.2 1.0
NE2 A:HIS304 2.1 5.9 1.0
C1B A:HEM501 3.0 8.4 1.0
C4D A:HEM501 3.0 6.5 1.0
C1D A:HEM501 3.1 5.9 1.0
O A:HOH918 3.1 34.6 1.0
CE1 A:HIS304 3.1 6.0 1.0
C1A A:HEM501 3.1 6.6 1.0
C4B A:HEM501 3.1 6.9 1.0
C4C A:HEM501 3.1 6.1 1.0
C4A A:HEM501 3.1 7.5 1.0
C1C A:HEM501 3.1 7.0 1.0
CD2 A:HIS304 3.1 5.7 1.0
HE1 A:HIS304 3.2 7.2 1.0
HD2 A:HIS304 3.3 6.8 1.0
CHA A:HEM501 3.4 5.8 1.0
CHD A:HEM501 3.4 6.1 1.0
CHB A:HEM501 3.5 8.4 1.0
CHC A:HEM501 3.5 7.6 1.0
HH11 A:ARG332 3.8 9.5 1.0
ND1 A:HIS304 4.2 6.3 1.0
CG A:HIS304 4.3 5.7 1.0
NH1 A:ARG332 4.3 7.9 1.0
C2D A:HEM501 4.3 6.3 1.0
C3D A:HEM501 4.3 6.2 1.0
C3B A:HEM501 4.3 7.3 1.0
C2B A:HEM501 4.3 8.4 1.0
C2A A:HEM501 4.3 6.6 1.0
C3A A:HEM501 4.3 7.5 1.0
C3C A:HEM501 4.3 6.9 1.0
C2C A:HEM501 4.3 7.1 1.0
HD2 A:ARG332 4.4 9.9 1.0
HHB A:HEM501 4.4 10.1 1.0
HHA A:HEM501 4.4 6.9 1.0
HHD A:HEM501 4.4 7.3 1.0
HH12 A:ARG332 4.4 9.5 1.0
HHC A:HEM501 4.4 9.2 1.0
HG1 A:THR308 4.5 9.7 1.0
HG21 A:THR308 4.6 10.6 1.0
O A:HOH1032 4.6 31.3 1.0
HD3 A:ARG332 4.7 9.9 1.0
HG21 A:ILE398 4.7 11.0 1.0
CD A:ARG332 4.9 8.2 1.0
HD1 A:HIS304 5.0 7.6 1.0

Reference:

D.Linde, M.Canellas, I.Davo-Siguero, A.Romero, F.Lucas, F.J.Ruiz-Duenas, V.Guallar, A.T.Martinez. Asymmetric Sulfoxidation By Engineering the Heme Pocket of A Dye-Decolorizing Peroxidase Catalysis Science and 2016TECHNOLOGY.
ISSN: ESSN 2044-4761
DOI: 10.1039/C6CY00539J
Page generated: Tue Aug 6 02:14:40 2024

Last articles

Ca in 5H8X
Ca in 5H8N
Ca in 5H8H
Ca in 5H7O
Ca in 5H6U
Ca in 5H7W
Ca in 5H4Z
Ca in 5H74
Ca in 5H71
Ca in 5H5H
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy