Iron in PDB 5ixz: Crystal Structure of the Signaling Protein Complex 5

The structure of Crystal Structure of the Signaling Protein Complex 5, PDB code: 5ixz was solved by V.Kumar, F.Van Den Akker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.98 / 2.40
Space group	P 21 3
Cell size a, b, c (Å), α, β, γ (°)	123.267, 123.267, 123.267, 90.00, 90.00, 90.00
R / Rfree (%)	14.9 / 17.7

The binding sites of Iron atom in the Crystal Structure of the Signaling Protein Complex 5 (pdb code 5ixz). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of the Signaling Protein Complex 5, PDB code: 5ixz:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of the Signaling Protein Complex 5


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the Signaling Protein Complex 5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:86.3 occ:1.00 FE A:HEM201 0.0 86.3 1.0 ND A:HEM201 1.9 82.2 1.0 NA A:HEM201 2.0 84.7 1.0 NC A:HEM201 2.1 85.2 1.0 NB A:HEM201 2.1 85.1 1.0 NE2 A:HIS105 2.4 85.3 1.0 O A:DMS202 2.9 0.7 1.0 C4D A:HEM201 2.9 85.0 1.0 C1D A:HEM201 2.9 85.4 1.0 C1A A:HEM201 3.0 84.7 1.0 C4A A:HEM201 3.0 84.0 1.0 C4B A:HEM201 3.0 81.4 1.0 C1B A:HEM201 3.1 82.6 1.0 C1C A:HEM201 3.1 83.0 1.0 C4C A:HEM201 3.1 84.8 1.0 CE1 A:HIS105 3.2 89.2 1.0 CHA A:HEM201 3.4 85.2 1.0 CHD A:HEM201 3.4 86.4 1.0 CHB A:HEM201 3.4 83.6 1.0 CHC A:HEM201 3.4 83.2 1.0 CD2 A:HIS105 3.5 86.5 1.0 NE1 A:TRP74 4.0 76.9 1.0 S A:DMS202 4.1 0.8 1.0 C3D A:HEM201 4.2 90.9 1.0 C2D A:HEM201 4.2 87.3 1.0 C2A A:HEM201 4.2 87.0 1.0 C3A A:HEM201 4.2 83.0 1.0 C2C A:HEM201 4.3 80.4 1.0 C2B A:HEM201 4.3 85.1 1.0 C3C A:HEM201 4.3 83.3 1.0 C3B A:HEM201 4.3 88.5 1.0 ND1 A:HIS105 4.4 82.0 1.0 CG A:HIS105 4.6 86.8 1.0 CE2 A:TRP74 4.6 74.6 1.0 CZ2 A:TRP74 4.7 80.2 1.0 CD1 A:TRP74 4.9 81.6 1.0

Iron binding site 2 out of 2 in the Crystal Structure of the Signaling Protein Complex 5


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of the Signaling Protein Complex 5 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe501 b:84.5 occ:1.00 FE B:HEM501 0.0 84.5 1.0 ND B:HEM501 1.9 77.1 1.0 NA B:HEM501 2.0 75.1 1.0 NC B:HEM501 2.1 80.3 1.0 NB B:HEM501 2.1 79.5 1.0 NE2 B:HIS105 2.4 92.1 1.0 C4D B:HEM501 2.9 79.7 1.0 C1D B:HEM501 2.9 74.4 1.0 C1A B:HEM501 3.0 79.9 1.0 C4A B:HEM501 3.0 82.8 1.0 C1B B:HEM501 3.1 84.3 1.0 C4B B:HEM501 3.1 79.3 1.0 C1C B:HEM501 3.1 75.5 1.0 C4C B:HEM501 3.1 84.1 1.0 CE1 B:HIS105 3.1 92.4 1.0 O B:DMS502 3.2 0.8 1.0 CHA B:HEM501 3.4 78.5 1.0 CHD B:HEM501 3.4 81.2 1.0 CHB B:HEM501 3.4 81.6 1.0 CHC B:HEM501 3.4 80.1 1.0 CD2 B:HIS105 3.5 91.2 1.0 NE1 B:TRP74 3.7 80.7 1.0 C2A B:HEM501 4.2 80.2 1.0 C2D B:HEM501 4.2 77.2 1.0 C3D B:HEM501 4.2 83.1 1.0 C3A B:HEM501 4.2 80.3 1.0 C2C B:HEM501 4.3 80.6 1.0 C2B B:HEM501 4.3 83.8 1.0 C3C B:HEM501 4.3 87.0 1.0 ND1 B:HIS105 4.3 82.4 1.0 C3B B:HEM501 4.3 83.7 1.0 S B:DMS502 4.4 0.6 1.0 CE2 B:TRP74 4.5 84.9 1.0 CG B:HIS105 4.5 84.1 1.0 CD1 B:TRP74 4.6 82.4 1.0 CZ2 B:TRP74 4.7 82.0 1.0

V.Kumar, F.Van Den Akker. Crystal Structure of the Signaling Protein Complex 5 To Be Published.