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Iron in PDB 5xlf: Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Enzymatic activity of Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
All present enzymatic activity of Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase:
1.12.2.1;
1.12.2.1;
Protein crystallography data
The structure of Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase, PDB code: 5xlf
was solved by
K.Nishikawa,
S.Mochida,
T.Hiromoto,
N.Shibata,
Y.Higuchi,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 39.05 / 1.71 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 66.570, 98.970, 127.120, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 14.2 / 17.5 |
Other elements in 5xlf:
The structure of Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase also contains other interesting chemical elements:
| Nickel | (Ni) | 1 atom |
| Magnesium | (Mg) | 1 atom |
Iron Binding Sites:
Pages:
>>> Page 1 <<< Page 2, Binding sites: 11 - 12;Binding sites:
The binding sites of Iron atom in the Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase (pdb code 5xlf). This binding sites where shown within 5.0 Angstroms radius around Iron atom.In total 12 binding sites of Iron where determined in the Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase, PDB code: 5xlf:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;
Iron binding site 1 out of 12 in 5xlf
Go back to
Iron Binding Sites List in 5xlf
Iron binding site 1 out
of 12 in the Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 2 out of 12 in 5xlf
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Iron Binding Sites List in 5xlf
Iron binding site 2 out
of 12 in the Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 3 out of 12 in 5xlf
Go back to
Iron Binding Sites List in 5xlf
Iron binding site 3 out
of 12 in the Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 4 out of 12 in 5xlf
Go back to
Iron Binding Sites List in 5xlf
Iron binding site 4 out
of 12 in the Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 5 out of 12 in 5xlf
Go back to
Iron Binding Sites List in 5xlf
Iron binding site 5 out
of 12 in the Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 6 out of 12 in 5xlf
Go back to
Iron Binding Sites List in 5xlf
Iron binding site 6 out
of 12 in the Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 7 out of 12 in 5xlf
Go back to
Iron Binding Sites List in 5xlf
Iron binding site 7 out
of 12 in the Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 8 out of 12 in 5xlf
Go back to
Iron Binding Sites List in 5xlf
Iron binding site 8 out
of 12 in the Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 9 out of 12 in 5xlf
Go back to
Iron Binding Sites List in 5xlf
Iron binding site 9 out
of 12 in the Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 10 out of 12 in 5xlf
Go back to
Iron Binding Sites List in 5xlf
Iron binding site 10 out
of 12 in the Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of Aerobically Purified and Aerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Reference:
K.Nishikawa,
S.Mochida,
T.Hiromoto,
N.Shibata,
Y.Higuchi.
Ni-Elimination From the Active Site of the Standard [Nife]‐Hydrogenase Upon Oxidation By O2. J. Inorg. Biochem. V. 177 435 2017.
ISSN: ISSN 1873-3344
PubMed: 28967475
DOI: 10.1016/J.JINORGBIO.2017.09.011
Page generated: Sun Dec 13 16:17:23 2020
ISSN: ISSN 1873-3344
PubMed: 28967475
DOI: 10.1016/J.JINORGBIO.2017.09.011
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