Iron in PDB 5xnl: Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum
Enzymatic activity of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum
All present enzymatic activity of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum:
1.10.3.9;
Other elements in 5xnl:
The structure of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum
(pdb code 5xnl). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum, PDB code: 5xnl:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 5xnl
Go back to
Iron Binding Sites List in 5xnl
Iron binding site 1 out
of 4 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe402
b:0.0
occ:1.00
|
NE2
|
A:HIS215
|
2.1
|
17.1
|
1.0
|
NE2
|
D:HIS215
|
2.2
|
12.6
|
1.0
|
NE2
|
A:HIS272
|
2.2
|
25.9
|
1.0
|
O2
|
D:BCT401
|
2.3
|
14.8
|
1.0
|
NE2
|
D:HIS269
|
2.3
|
19.1
|
1.0
|
O3
|
D:BCT401
|
2.3
|
14.1
|
1.0
|
CE1
|
A:HIS215
|
2.7
|
16.8
|
1.0
|
C
|
D:BCT401
|
2.8
|
14.6
|
1.0
|
CE1
|
D:HIS215
|
3.1
|
15.2
|
1.0
|
CE1
|
A:HIS272
|
3.2
|
31.5
|
1.0
|
CD2
|
A:HIS272
|
3.2
|
20.9
|
1.0
|
CD2
|
D:HIS215
|
3.2
|
10.9
|
1.0
|
CD2
|
D:HIS269
|
3.3
|
16.2
|
1.0
|
CE1
|
D:HIS269
|
3.3
|
21.8
|
1.0
|
CD2
|
A:HIS215
|
3.4
|
14.2
|
1.0
|
ND1
|
A:HIS215
|
4.0
|
17.2
|
1.0
|
O1
|
D:BCT401
|
4.0
|
17.3
|
1.0
|
ND1
|
D:HIS215
|
4.2
|
12.8
|
1.0
|
ND1
|
A:HIS272
|
4.3
|
27.2
|
1.0
|
CG
|
A:HIS215
|
4.3
|
17.5
|
1.0
|
CG
|
D:HIS215
|
4.3
|
11.3
|
1.0
|
CG
|
A:HIS272
|
4.3
|
22.7
|
1.0
|
ND1
|
D:HIS269
|
4.4
|
16.1
|
1.0
|
CG
|
D:HIS269
|
4.4
|
13.1
|
1.0
|
OH
|
D:TYR245
|
4.6
|
33.7
|
1.0
|
CG2
|
A:VAL219
|
4.7
|
29.2
|
1.0
|
CG2
|
D:VAL219
|
4.7
|
23.5
|
1.0
|
OH
|
A:TYR246
|
4.8
|
47.3
|
1.0
|
CD1
|
A:LEU275
|
5.0
|
36.2
|
1.0
|
|
Iron binding site 2 out
of 4 in 5xnl
Go back to
Iron Binding Sites List in 5xnl
Iron binding site 2 out
of 4 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe101
b:83.8
occ:1.00
|
FE
|
F:HEM101
|
0.0
|
83.8
|
1.0
|
NC
|
F:HEM101
|
2.0
|
74.1
|
1.0
|
NA
|
F:HEM101
|
2.0
|
91.7
|
1.0
|
NB
|
F:HEM101
|
2.0
|
87.1
|
1.0
|
ND
|
F:HEM101
|
2.0
|
88.8
|
1.0
|
NE2
|
F:HIS18
|
2.0
|
48.5
|
1.0
|
NE2
|
E:HIS23
|
2.1
|
52.4
|
1.0
|
CD2
|
E:HIS23
|
3.0
|
50.2
|
1.0
|
CE1
|
F:HIS18
|
3.0
|
49.5
|
1.0
|
C4C
|
F:HEM101
|
3.0
|
73.8
|
1.0
|
C1C
|
F:HEM101
|
3.0
|
75.9
|
1.0
|
C4A
|
F:HEM101
|
3.0
|
0.9
|
1.0
|
CD2
|
F:HIS18
|
3.0
|
52.4
|
1.0
|
C1A
|
F:HEM101
|
3.0
|
97.1
|
1.0
|
C1B
|
F:HEM101
|
3.0
|
99.1
|
1.0
|
C1D
|
F:HEM101
|
3.0
|
87.0
|
1.0
|
C4B
|
F:HEM101
|
3.1
|
81.3
|
1.0
|
C4D
|
F:HEM101
|
3.1
|
95.9
|
1.0
|
CE1
|
E:HIS23
|
3.1
|
46.8
|
1.0
|
CHD
|
F:HEM101
|
3.4
|
81.5
|
1.0
|
CHC
|
F:HEM101
|
3.4
|
73.0
|
1.0
|
CHB
|
F:HEM101
|
3.4
|
1.0
|
1.0
|
CHA
|
F:HEM101
|
3.4
|
96.9
|
1.0
|
ND1
|
F:HIS18
|
4.1
|
46.1
|
1.0
|
CG
|
F:HIS18
|
4.1
|
49.7
|
1.0
|
CG
|
E:HIS23
|
4.2
|
46.2
|
1.0
|
ND1
|
E:HIS23
|
4.2
|
46.5
|
1.0
|
C3A
|
F:HEM101
|
4.2
|
0.8
|
1.0
|
C2A
|
F:HEM101
|
4.2
|
0.5
|
1.0
|
C2C
|
F:HEM101
|
4.2
|
74.8
|
1.0
|
C3C
|
F:HEM101
|
4.2
|
76.7
|
1.0
|
C2D
|
F:HEM101
|
4.3
|
96.3
|
1.0
|
C2B
|
F:HEM101
|
4.3
|
0.1
|
1.0
|
C3B
|
F:HEM101
|
4.3
|
92.6
|
1.0
|
C3D
|
F:HEM101
|
4.3
|
0.6
|
1.0
|
CE1
|
E:TYR19
|
4.7
|
58.8
|
1.0
|
NE1
|
F:TRP14
|
4.7
|
63.4
|
1.0
|
|
Iron binding site 3 out
of 4 in 5xnl
Go back to
Iron Binding Sites List in 5xnl
Iron binding site 3 out
of 4 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Fe402
b:0.0
occ:1.00
|
NE2
|
a:HIS215
|
2.1
|
17.1
|
1.0
|
NE2
|
d:HIS215
|
2.2
|
12.6
|
1.0
|
NE2
|
a:HIS272
|
2.2
|
25.9
|
1.0
|
O2
|
d:BCT401
|
2.3
|
14.8
|
1.0
|
NE2
|
d:HIS269
|
2.3
|
19.1
|
1.0
|
O3
|
d:BCT401
|
2.3
|
14.1
|
1.0
|
CE1
|
a:HIS215
|
2.7
|
16.8
|
1.0
|
C
|
d:BCT401
|
2.8
|
14.6
|
1.0
|
CE1
|
d:HIS215
|
3.1
|
15.2
|
1.0
|
CE1
|
a:HIS272
|
3.2
|
31.5
|
1.0
|
CD2
|
a:HIS272
|
3.2
|
20.9
|
1.0
|
CD2
|
d:HIS215
|
3.2
|
10.9
|
1.0
|
CD2
|
d:HIS269
|
3.3
|
16.2
|
1.0
|
CE1
|
d:HIS269
|
3.3
|
21.8
|
1.0
|
CD2
|
a:HIS215
|
3.4
|
14.2
|
1.0
|
ND1
|
a:HIS215
|
4.0
|
17.2
|
1.0
|
O1
|
d:BCT401
|
4.0
|
17.3
|
1.0
|
ND1
|
d:HIS215
|
4.2
|
12.8
|
1.0
|
ND1
|
a:HIS272
|
4.3
|
27.2
|
1.0
|
CG
|
a:HIS215
|
4.3
|
17.5
|
1.0
|
CG
|
d:HIS215
|
4.3
|
11.3
|
1.0
|
CG
|
a:HIS272
|
4.3
|
22.7
|
1.0
|
ND1
|
d:HIS269
|
4.4
|
16.1
|
1.0
|
CG
|
d:HIS269
|
4.4
|
13.1
|
1.0
|
OH
|
d:TYR245
|
4.6
|
33.7
|
1.0
|
CG2
|
a:VAL219
|
4.7
|
29.2
|
1.0
|
CG2
|
d:VAL219
|
4.7
|
23.5
|
1.0
|
OH
|
a:TYR246
|
4.8
|
47.3
|
1.0
|
CD1
|
a:LEU275
|
5.0
|
36.2
|
1.0
|
|
Iron binding site 4 out
of 4 in 5xnl
Go back to
Iron Binding Sites List in 5xnl
Iron binding site 4 out
of 4 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
f:Fe101
b:83.8
occ:1.00
|
FE
|
f:HEM101
|
0.0
|
83.8
|
1.0
|
NC
|
f:HEM101
|
2.0
|
74.1
|
1.0
|
NA
|
f:HEM101
|
2.0
|
91.7
|
1.0
|
NB
|
f:HEM101
|
2.0
|
87.1
|
1.0
|
ND
|
f:HEM101
|
2.0
|
88.8
|
1.0
|
NE2
|
f:HIS18
|
2.0
|
48.5
|
1.0
|
NE2
|
e:HIS23
|
2.1
|
52.4
|
1.0
|
CD2
|
e:HIS23
|
3.0
|
50.2
|
1.0
|
CE1
|
f:HIS18
|
3.0
|
49.5
|
1.0
|
C4C
|
f:HEM101
|
3.0
|
73.8
|
1.0
|
C1C
|
f:HEM101
|
3.0
|
75.9
|
1.0
|
C4A
|
f:HEM101
|
3.0
|
0.9
|
1.0
|
CD2
|
f:HIS18
|
3.0
|
52.4
|
1.0
|
C1A
|
f:HEM101
|
3.0
|
97.1
|
1.0
|
C1B
|
f:HEM101
|
3.0
|
99.1
|
1.0
|
C1D
|
f:HEM101
|
3.0
|
87.0
|
1.0
|
C4B
|
f:HEM101
|
3.0
|
81.3
|
1.0
|
C4D
|
f:HEM101
|
3.1
|
95.9
|
1.0
|
CE1
|
e:HIS23
|
3.1
|
46.8
|
1.0
|
CHD
|
f:HEM101
|
3.4
|
81.5
|
1.0
|
CHC
|
f:HEM101
|
3.4
|
73.0
|
1.0
|
CHB
|
f:HEM101
|
3.4
|
1.0
|
1.0
|
CHA
|
f:HEM101
|
3.4
|
96.9
|
1.0
|
ND1
|
f:HIS18
|
4.1
|
46.1
|
1.0
|
CG
|
f:HIS18
|
4.1
|
49.7
|
1.0
|
CG
|
e:HIS23
|
4.2
|
46.2
|
1.0
|
ND1
|
e:HIS23
|
4.2
|
46.5
|
1.0
|
C3A
|
f:HEM101
|
4.2
|
0.8
|
1.0
|
C2A
|
f:HEM101
|
4.2
|
0.5
|
1.0
|
C2C
|
f:HEM101
|
4.2
|
74.8
|
1.0
|
C3C
|
f:HEM101
|
4.2
|
76.7
|
1.0
|
C2D
|
f:HEM101
|
4.3
|
96.3
|
1.0
|
C2B
|
f:HEM101
|
4.3
|
0.1
|
1.0
|
C3B
|
f:HEM101
|
4.3
|
92.6
|
1.0
|
C3D
|
f:HEM101
|
4.3
|
0.6
|
1.0
|
CE1
|
e:TYR19
|
4.7
|
58.8
|
1.0
|
NE1
|
f:TRP14
|
4.7
|
63.4
|
1.0
|
|
Reference:
X.Su,
J.Ma,
X.Wei,
P.Cao,
D.Zhu,
W.Chang,
Z.Liu,
X.Zhang,
M.Li.
Structure and Assembly Mechanism of Plant C2S2M2-Type Psii-Lhcii Supercomplex Science V. 357 815 2017.
ISSN: ESSN 1095-9203
PubMed: 28839073
DOI: 10.1126/SCIENCE.AAN0327
Page generated: Tue Aug 6 11:51:04 2024
|