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Iron in PDB 5xnl: Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum

Enzymatic activity of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum

All present enzymatic activity of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum:
1.10.3.9;

Other elements in 5xnl:

The structure of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum also contains other interesting chemical elements:

Magnesium (Mg) 314 atoms
Manganese (Mn) 8 atoms
Calcium (Ca) 2 atoms
Chlorine (Cl) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum (pdb code 5xnl). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum, PDB code: 5xnl:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 5xnl

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Iron binding site 1 out of 4 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe402

b:0.0
occ:1.00
NE2 A:HIS215 2.1 17.1 1.0
NE2 D:HIS215 2.2 12.6 1.0
NE2 A:HIS272 2.2 25.9 1.0
O2 D:BCT401 2.3 14.8 1.0
NE2 D:HIS269 2.3 19.1 1.0
O3 D:BCT401 2.3 14.1 1.0
CE1 A:HIS215 2.7 16.8 1.0
C D:BCT401 2.8 14.6 1.0
CE1 D:HIS215 3.1 15.2 1.0
CE1 A:HIS272 3.2 31.5 1.0
CD2 A:HIS272 3.2 20.9 1.0
CD2 D:HIS215 3.2 10.9 1.0
CD2 D:HIS269 3.3 16.2 1.0
CE1 D:HIS269 3.3 21.8 1.0
CD2 A:HIS215 3.4 14.2 1.0
ND1 A:HIS215 4.0 17.2 1.0
O1 D:BCT401 4.0 17.3 1.0
ND1 D:HIS215 4.2 12.8 1.0
ND1 A:HIS272 4.3 27.2 1.0
CG A:HIS215 4.3 17.5 1.0
CG D:HIS215 4.3 11.3 1.0
CG A:HIS272 4.3 22.7 1.0
ND1 D:HIS269 4.4 16.1 1.0
CG D:HIS269 4.4 13.1 1.0
OH D:TYR245 4.6 33.7 1.0
CG2 A:VAL219 4.7 29.2 1.0
CG2 D:VAL219 4.7 23.5 1.0
OH A:TYR246 4.8 47.3 1.0
CD1 A:LEU275 5.0 36.2 1.0

Iron binding site 2 out of 4 in 5xnl

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Iron binding site 2 out of 4 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe101

b:83.8
occ:1.00
FE F:HEM101 0.0 83.8 1.0
NC F:HEM101 2.0 74.1 1.0
NA F:HEM101 2.0 91.7 1.0
NB F:HEM101 2.0 87.1 1.0
ND F:HEM101 2.0 88.8 1.0
NE2 F:HIS18 2.0 48.5 1.0
NE2 E:HIS23 2.1 52.4 1.0
CD2 E:HIS23 3.0 50.2 1.0
CE1 F:HIS18 3.0 49.5 1.0
C4C F:HEM101 3.0 73.8 1.0
C1C F:HEM101 3.0 75.9 1.0
C4A F:HEM101 3.0 0.9 1.0
CD2 F:HIS18 3.0 52.4 1.0
C1A F:HEM101 3.0 97.1 1.0
C1B F:HEM101 3.0 99.1 1.0
C1D F:HEM101 3.0 87.0 1.0
C4B F:HEM101 3.1 81.3 1.0
C4D F:HEM101 3.1 95.9 1.0
CE1 E:HIS23 3.1 46.8 1.0
CHD F:HEM101 3.4 81.5 1.0
CHC F:HEM101 3.4 73.0 1.0
CHB F:HEM101 3.4 1.0 1.0
CHA F:HEM101 3.4 96.9 1.0
ND1 F:HIS18 4.1 46.1 1.0
CG F:HIS18 4.1 49.7 1.0
CG E:HIS23 4.2 46.2 1.0
ND1 E:HIS23 4.2 46.5 1.0
C3A F:HEM101 4.2 0.8 1.0
C2A F:HEM101 4.2 0.5 1.0
C2C F:HEM101 4.2 74.8 1.0
C3C F:HEM101 4.2 76.7 1.0
C2D F:HEM101 4.3 96.3 1.0
C2B F:HEM101 4.3 0.1 1.0
C3B F:HEM101 4.3 92.6 1.0
C3D F:HEM101 4.3 0.6 1.0
CE1 E:TYR19 4.7 58.8 1.0
NE1 F:TRP14 4.7 63.4 1.0

Iron binding site 3 out of 4 in 5xnl

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Iron binding site 3 out of 4 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe402

b:0.0
occ:1.00
NE2 a:HIS215 2.1 17.1 1.0
NE2 d:HIS215 2.2 12.6 1.0
NE2 a:HIS272 2.2 25.9 1.0
O2 d:BCT401 2.3 14.8 1.0
NE2 d:HIS269 2.3 19.1 1.0
O3 d:BCT401 2.3 14.1 1.0
CE1 a:HIS215 2.7 16.8 1.0
C d:BCT401 2.8 14.6 1.0
CE1 d:HIS215 3.1 15.2 1.0
CE1 a:HIS272 3.2 31.5 1.0
CD2 a:HIS272 3.2 20.9 1.0
CD2 d:HIS215 3.2 10.9 1.0
CD2 d:HIS269 3.3 16.2 1.0
CE1 d:HIS269 3.3 21.8 1.0
CD2 a:HIS215 3.4 14.2 1.0
ND1 a:HIS215 4.0 17.2 1.0
O1 d:BCT401 4.0 17.3 1.0
ND1 d:HIS215 4.2 12.8 1.0
ND1 a:HIS272 4.3 27.2 1.0
CG a:HIS215 4.3 17.5 1.0
CG d:HIS215 4.3 11.3 1.0
CG a:HIS272 4.3 22.7 1.0
ND1 d:HIS269 4.4 16.1 1.0
CG d:HIS269 4.4 13.1 1.0
OH d:TYR245 4.6 33.7 1.0
CG2 a:VAL219 4.7 29.2 1.0
CG2 d:VAL219 4.7 23.5 1.0
OH a:TYR246 4.8 47.3 1.0
CD1 a:LEU275 5.0 36.2 1.0

Iron binding site 4 out of 4 in 5xnl

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Iron binding site 4 out of 4 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe atom residue distance (Å) B Occ
f:Fe101

b:83.8
occ:1.00
FE f:HEM101 0.0 83.8 1.0
NC f:HEM101 2.0 74.1 1.0
NA f:HEM101 2.0 91.7 1.0
NB f:HEM101 2.0 87.1 1.0
ND f:HEM101 2.0 88.8 1.0
NE2 f:HIS18 2.0 48.5 1.0
NE2 e:HIS23 2.1 52.4 1.0
CD2 e:HIS23 3.0 50.2 1.0
CE1 f:HIS18 3.0 49.5 1.0
C4C f:HEM101 3.0 73.8 1.0
C1C f:HEM101 3.0 75.9 1.0
C4A f:HEM101 3.0 0.9 1.0
CD2 f:HIS18 3.0 52.4 1.0
C1A f:HEM101 3.0 97.1 1.0
C1B f:HEM101 3.0 99.1 1.0
C1D f:HEM101 3.0 87.0 1.0
C4B f:HEM101 3.0 81.3 1.0
C4D f:HEM101 3.1 95.9 1.0
CE1 e:HIS23 3.1 46.8 1.0
CHD f:HEM101 3.4 81.5 1.0
CHC f:HEM101 3.4 73.0 1.0
CHB f:HEM101 3.4 1.0 1.0
CHA f:HEM101 3.4 96.9 1.0
ND1 f:HIS18 4.1 46.1 1.0
CG f:HIS18 4.1 49.7 1.0
CG e:HIS23 4.2 46.2 1.0
ND1 e:HIS23 4.2 46.5 1.0
C3A f:HEM101 4.2 0.8 1.0
C2A f:HEM101 4.2 0.5 1.0
C2C f:HEM101 4.2 74.8 1.0
C3C f:HEM101 4.2 76.7 1.0
C2D f:HEM101 4.3 96.3 1.0
C2B f:HEM101 4.3 0.1 1.0
C3B f:HEM101 4.3 92.6 1.0
C3D f:HEM101 4.3 0.6 1.0
CE1 e:TYR19 4.7 58.8 1.0
NE1 f:TRP14 4.7 63.4 1.0

Reference:

X.Su, J.Ma, X.Wei, P.Cao, D.Zhu, W.Chang, Z.Liu, X.Zhang, M.Li. Structure and Assembly Mechanism of Plant C2S2M2-Type Psii-Lhcii Supercomplex Science V. 357 815 2017.
ISSN: ESSN 1095-9203
PubMed: 28839073
DOI: 10.1126/SCIENCE.AAN0327
Page generated: Tue Aug 6 11:51:04 2024

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