Atomistry » Iron » PDB 5x2r-5xtd » 5xnm
Atomistry »
  Iron »
    PDB 5x2r-5xtd »
      5xnm »

Iron in PDB 5xnm: Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum

Enzymatic activity of Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum

All present enzymatic activity of Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum:
1.10.3.9;

Other elements in 5xnm:

The structure of Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum also contains other interesting chemical elements:

Magnesium (Mg) 314 atoms
Manganese (Mn) 8 atoms
Calcium (Ca) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum (pdb code 5xnm). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum, PDB code: 5xnm:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 5xnm

Go back to Iron Binding Sites List in 5xnm
Iron binding site 1 out of 4 in the Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe402

b:8.7
occ:1.00
NE2 D:HIS215 2.0 23.6 1.0
NE2 A:HIS215 2.2 28.6 1.0
NE2 A:HIS272 2.3 35.3 1.0
NE2 D:HIS269 2.3 26.0 1.0
O3 D:BCT401 2.3 16.6 1.0
O2 D:BCT401 2.4 17.4 1.0
C D:BCT401 2.8 17.2 1.0
CD2 D:HIS215 2.9 21.9 1.0
CE1 D:HIS215 3.0 26.2 1.0
CD2 A:HIS215 3.1 25.7 1.0
CE1 A:HIS215 3.2 28.4 1.0
CD2 A:HIS272 3.2 30.3 1.0
CE1 D:HIS269 3.2 28.6 1.0
CD2 D:HIS269 3.3 23.1 1.0
CE1 A:HIS272 3.3 41.0 1.0
O1 D:BCT401 4.1 19.9 1.0
CG D:HIS215 4.1 22.4 1.0
ND1 D:HIS215 4.1 23.8 1.0
CG A:HIS215 4.2 29.0 1.0
ND1 A:HIS215 4.3 28.7 1.0
ND1 D:HIS269 4.4 23.0 1.0
CG A:HIS272 4.4 32.1 1.0
ND1 A:HIS272 4.4 36.6 1.0
CG D:HIS269 4.4 20.0 1.0
CG2 D:VAL219 4.7 31.4 1.0
OH D:TYR245 4.7 41.5 1.0
CG2 A:VAL219 4.7 44.3 1.0
OH A:TYR246 4.8 61.6 1.0
CD1 A:LEU275 4.9 38.0 1.0

Iron binding site 2 out of 4 in 5xnm

Go back to Iron Binding Sites List in 5xnm
Iron binding site 2 out of 4 in the Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe101

b:86.3
occ:1.00
FE F:HEM101 0.0 86.3 1.0
NC F:HEM101 2.0 76.7 1.0
ND F:HEM101 2.0 91.4 1.0
NB F:HEM101 2.0 89.7 1.0
NA F:HEM101 2.0 94.2 1.0
NE2 F:HIS18 2.0 82.0 1.0
NE2 E:HIS23 2.1 0.0 1.0
CD2 E:HIS23 2.9 0.8 1.0
CD2 F:HIS18 3.0 85.8 1.0
C1A F:HEM101 3.0 99.7 1.0
C4D F:HEM101 3.0 98.5 1.0
C4A F:HEM101 3.0 0.5 1.0
C1C F:HEM101 3.0 78.5 1.0
C1D F:HEM101 3.0 89.5 1.0
C1B F:HEM101 3.0 0.6 1.0
C4B F:HEM101 3.0 83.9 1.0
C4C F:HEM101 3.1 76.4 1.0
CE1 F:HIS18 3.1 83.0 1.0
CE1 E:HIS23 3.1 0.4 1.0
CHA F:HEM101 3.4 99.5 1.0
CHC F:HEM101 3.4 75.6 1.0
CHB F:HEM101 3.4 0.5 1.0
CHD F:HEM101 3.4 84.1 1.0
CG E:HIS23 4.1 0.8 1.0
CG F:HIS18 4.1 83.1 1.0
ND1 E:HIS23 4.1 0.1 1.0
ND1 F:HIS18 4.2 79.5 1.0
C2A F:HEM101 4.2 0.1 1.0
C3A F:HEM101 4.2 0.4 1.0
C3D F:HEM101 4.2 0.1 1.0
C2D F:HEM101 4.2 98.9 1.0
C2C F:HEM101 4.3 77.3 1.0
C2B F:HEM101 4.3 0.7 1.0
C3B F:HEM101 4.3 95.2 1.0
C3C F:HEM101 4.3 79.2 1.0

Iron binding site 3 out of 4 in 5xnm

Go back to Iron Binding Sites List in 5xnm
Iron binding site 3 out of 4 in the Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe402

b:8.7
occ:1.00
NE2 d:HIS215 2.0 23.8 1.0
NE2 a:HIS215 2.2 29.6 1.0
NE2 a:HIS272 2.3 36.4 1.0
NE2 d:HIS269 2.3 25.8 1.0
O3 d:BCT401 2.3 16.6 1.0
O2 d:BCT401 2.4 17.4 1.0
C d:BCT401 2.8 17.2 1.0
CD2 d:HIS215 2.9 22.1 1.0
CE1 d:HIS215 3.0 26.4 1.0
CD2 a:HIS215 3.1 26.8 1.0
CE1 a:HIS215 3.2 29.4 1.0
CD2 a:HIS272 3.2 31.4 1.0
CE1 d:HIS269 3.2 28.5 1.0
CD2 d:HIS269 3.3 22.9 1.0
CE1 a:HIS272 3.3 42.1 1.0
O1 d:BCT401 4.1 19.9 1.0
CG d:HIS215 4.1 22.5 1.0
ND1 d:HIS215 4.1 24.0 1.0
CG a:HIS215 4.2 30.1 1.0
ND1 a:HIS215 4.3 29.7 1.0
ND1 d:HIS269 4.4 22.8 1.0
CG a:HIS272 4.4 33.3 1.0
ND1 a:HIS272 4.4 37.8 1.0
CG d:HIS269 4.4 19.8 1.0
CG2 d:VAL219 4.7 32.5 1.0
OH d:TYR245 4.7 40.6 1.0
CG2 a:VAL219 4.7 42.1 1.0
OH a:TYR246 4.8 59.2 1.0
CD1 a:LEU275 4.9 41.1 1.0

Iron binding site 4 out of 4 in 5xnm

Go back to Iron Binding Sites List in 5xnm
Iron binding site 4 out of 4 in the Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Unstacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range:
probe atom residue distance (Å) B Occ
f:Fe101

b:86.3
occ:1.00
FE f:HEM101 0.0 86.3 1.0
NC f:HEM101 2.0 76.7 1.0
ND f:HEM101 2.0 91.4 1.0
NB f:HEM101 2.0 89.7 1.0
NA f:HEM101 2.0 94.2 1.0
NE2 f:HIS18 2.0 81.8 1.0
NE2 e:HIS23 2.1 0.4 1.0
CD2 e:HIS23 2.9 0.2 1.0
CD2 f:HIS18 3.0 85.6 1.0
C1A f:HEM101 3.0 99.7 1.0
C4D f:HEM101 3.0 98.5 1.0
C4A f:HEM101 3.0 0.5 1.0
C1C f:HEM101 3.0 78.5 1.0
C1D f:HEM101 3.0 89.5 1.0
C4B f:HEM101 3.0 83.9 1.0
C1B f:HEM101 3.0 0.6 1.0
C4C f:HEM101 3.1 76.4 1.0
CE1 f:HIS18 3.1 82.8 1.0
CE1 e:HIS23 3.1 0.8 1.0
CHA f:HEM101 3.4 99.5 1.0
CHC f:HEM101 3.4 75.6 1.0
CHB f:HEM101 3.4 0.5 1.0
CHD f:HEM101 3.4 84.1 1.0
CG e:HIS23 4.1 0.2 1.0
CG f:HIS18 4.1 82.9 1.0
ND1 e:HIS23 4.1 0.6 1.0
ND1 f:HIS18 4.2 79.4 1.0
C2A f:HEM101 4.2 0.1 1.0
C3A f:HEM101 4.2 0.4 1.0
C3D f:HEM101 4.2 0.1 1.0
C2D f:HEM101 4.2 98.9 1.0
C2C f:HEM101 4.3 77.3 1.0
C2B f:HEM101 4.3 0.7 1.0
C3B f:HEM101 4.3 95.2 1.0
C3C f:HEM101 4.3 79.2 1.0

Reference:

X.Su, J.Ma, X.Wei, P.Cao, D.Zhu, W.Chang, Z.Liu, X.Zhang, M.Li. Structure and Assembly Mechanism of Plant C2S2M2-Type Psii-Lhcii Supercomplex Science V. 357 815 2017.
ISSN: ESSN 1095-9203
PubMed: 28839073
DOI: 10.1126/SCIENCE.AAN0327
Page generated: Sun Dec 13 16:17:44 2020

Last articles

Zn in 7O75
Zn in 7O73
Zn in 7O4I
Zn in 7O72
Zn in 7O4J
Zn in 7NVR
Zn in 7NVY
Zn in 7NVZ
Zn in 7NW0
Zn in 7O4K
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy