Iron in PDB 5xte: Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex)
Enzymatic activity of Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex)
All present enzymatic activity of Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex):
1.10.2.2;
Iron Binding Sites:
The binding sites of Iron atom in the Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex)
(pdb code 5xte). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex), PDB code: 5xte:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 5xte
Go back to
Iron Binding Sites List in 5xte
Iron binding site 1 out
of 10 in the Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe301
b:31.2
occ:1.00
|
FE1
|
C:FES301
|
0.0
|
31.2
|
1.0
|
|
S2
|
C:FES301
|
2.2
|
34.1
|
1.0
|
|
S1
|
C:FES301
|
2.2
|
33.8
|
1.0
|
|
CB
|
C:HIS219
|
3.0
|
21.9
|
1.0
|
|
FE2
|
C:FES301
|
3.1
|
33.2
|
1.0
|
|
SG
|
C:CYS217
|
3.3
|
21.6
|
1.0
|
|
SG
|
C:CYS236
|
3.5
|
35.0
|
1.0
|
|
N
|
C:LEU220
|
3.5
|
33.1
|
1.0
|
|
CB
|
C:CYS217
|
3.6
|
24.1
|
1.0
|
|
ND1
|
C:HIS219
|
3.8
|
26.5
|
1.0
|
|
CG
|
C:HIS219
|
3.8
|
19.9
|
1.0
|
|
CA
|
C:HIS219
|
3.9
|
33.1
|
1.0
|
|
N
|
C:HIS219
|
4.1
|
33.5
|
1.0
|
|
C
|
C:HIS219
|
4.3
|
36.3
|
1.0
|
|
OG
|
C:SER241
|
4.3
|
32.5
|
1.0
|
|
N
|
C:CYS222
|
4.3
|
38.1
|
1.0
|
|
N
|
C:GLY221
|
4.3
|
27.1
|
1.0
|
|
CB
|
C:CYS236
|
4.4
|
39.5
|
1.0
|
|
CB
|
C:CYS222
|
4.4
|
38.1
|
1.0
|
|
CA
|
C:LEU220
|
4.5
|
29.4
|
1.0
|
|
O
|
C:CYS222
|
4.6
|
41.0
|
1.0
|
|
C
|
C:LEU220
|
4.7
|
29.7
|
1.0
|
|
CB
|
C:LEU220
|
4.8
|
24.4
|
1.0
|
|
C
|
C:CYS217
|
4.8
|
33.0
|
1.0
|
|
CA
|
C:CYS217
|
4.9
|
29.8
|
1.0
|
|
CA
|
C:CYS222
|
4.9
|
40.2
|
1.0
|
|
CB
|
C:SER241
|
4.9
|
42.7
|
1.0
|
|
CB
|
C:CYS238
|
4.9
|
43.8
|
1.0
|
|
O
|
C:CYS217
|
5.0
|
34.3
|
1.0
|
|
Iron binding site 2 out
of 10 in 5xte
Go back to
Iron Binding Sites List in 5xte
Iron binding site 2 out
of 10 in the Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe301
b:33.2
occ:1.00
|
FE2
|
C:FES301
|
0.0
|
33.2
|
1.0
|
|
S1
|
C:FES301
|
2.2
|
33.8
|
1.0
|
|
S2
|
C:FES301
|
2.2
|
34.1
|
1.0
|
|
ND1
|
C:HIS219
|
2.4
|
26.5
|
1.0
|
|
ND1
|
C:HIS239
|
2.5
|
36.4
|
1.0
|
|
CG
|
C:HIS239
|
3.0
|
40.2
|
1.0
|
|
FE1
|
C:FES301
|
3.1
|
31.2
|
1.0
|
|
CE1
|
C:HIS219
|
3.1
|
23.8
|
1.0
|
|
CB
|
C:HIS239
|
3.1
|
45.2
|
1.0
|
|
CE1
|
C:HIS239
|
3.4
|
38.3
|
1.0
|
|
CG
|
C:HIS219
|
3.5
|
19.9
|
1.0
|
|
CB
|
C:HIS219
|
4.0
|
21.9
|
1.0
|
|
CD2
|
C:HIS239
|
4.0
|
40.9
|
1.0
|
|
CD1
|
C:LEU220
|
4.1
|
28.5
|
1.0
|
|
NE2
|
C:HIS239
|
4.2
|
39.4
|
1.0
|
|
CB
|
C:CYS238
|
4.2
|
43.8
|
1.0
|
|
N
|
C:HIS239
|
4.2
|
48.0
|
1.0
|
|
NE2
|
C:HIS219
|
4.2
|
22.6
|
1.0
|
|
CB
|
C:LEU220
|
4.2
|
24.4
|
1.0
|
|
CG
|
C:LEU220
|
4.2
|
22.4
|
1.0
|
|
CA
|
C:HIS239
|
4.3
|
48.1
|
1.0
|
|
N
|
C:LEU220
|
4.3
|
33.1
|
1.0
|
|
CD2
|
C:HIS219
|
4.4
|
25.1
|
1.0
|
|
C
|
C:CYS238
|
4.5
|
50.1
|
1.0
|
|
CG
|
C:PRO253
|
4.6
|
60.5
|
1.0
|
|
O
|
C:CYS238
|
4.8
|
55.2
|
1.0
|
|
CA
|
C:LEU220
|
4.9
|
29.4
|
1.0
|
|
OG
|
C:SER241
|
4.9
|
32.5
|
1.0
|
|
SG
|
C:CYS236
|
4.9
|
35.0
|
1.0
|
|
CA
|
C:CYS238
|
5.0
|
47.8
|
1.0
|
|
Iron binding site 3 out
of 10 in 5xte
Go back to
Iron Binding Sites List in 5xte
Iron binding site 3 out
of 10 in the Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe402
b:37.1
occ:1.00
|
FE
|
H:HEC402
|
0.0
|
37.1
|
1.0
|
|
NA
|
H:HEC402
|
2.0
|
40.5
|
1.0
|
|
NC
|
H:HEC402
|
2.0
|
37.2
|
1.0
|
|
ND
|
H:HEC402
|
2.0
|
43.2
|
1.0
|
|
NB
|
H:HEC402
|
2.1
|
34.0
|
1.0
|
|
NE2
|
H:HIS125
|
2.3
|
20.0
|
1.0
|
|
CE1
|
H:HIS125
|
2.7
|
20.0
|
1.0
|
|
C4A
|
H:HEC402
|
3.0
|
40.6
|
1.0
|
|
C1B
|
H:HEC402
|
3.0
|
33.9
|
1.0
|
|
C1A
|
H:HEC402
|
3.0
|
44.7
|
1.0
|
|
C1D
|
H:HEC402
|
3.0
|
41.4
|
1.0
|
|
C4C
|
H:HEC402
|
3.0
|
35.5
|
1.0
|
|
C4B
|
H:HEC402
|
3.0
|
34.3
|
1.0
|
|
C4D
|
H:HEC402
|
3.0
|
44.4
|
1.0
|
|
C1C
|
H:HEC402
|
3.1
|
36.1
|
1.0
|
|
SD
|
H:MET244
|
3.1
|
23.4
|
1.0
|
|
CHB
|
H:HEC402
|
3.3
|
36.3
|
1.0
|
|
CHD
|
H:HEC402
|
3.4
|
36.0
|
1.0
|
|
CHA
|
H:HEC402
|
3.4
|
45.1
|
1.0
|
|
CHC
|
H:HEC402
|
3.4
|
36.2
|
1.0
|
|
CD2
|
H:HIS125
|
3.6
|
20.0
|
1.0
|
|
ND1
|
H:HIS125
|
3.9
|
20.0
|
1.0
|
|
C3A
|
H:HEC402
|
4.2
|
41.4
|
1.0
|
|
CG
|
H:MET244
|
4.2
|
35.9
|
1.0
|
|
C2B
|
H:HEC402
|
4.2
|
34.4
|
1.0
|
|
C2A
|
H:HEC402
|
4.2
|
44.0
|
1.0
|
|
C3B
|
H:HEC402
|
4.2
|
35.5
|
1.0
|
|
C2D
|
H:HEC402
|
4.3
|
44.4
|
1.0
|
|
C3C
|
H:HEC402
|
4.3
|
35.5
|
1.0
|
|
C3D
|
H:HEC402
|
4.3
|
45.5
|
1.0
|
|
C2C
|
H:HEC402
|
4.3
|
36.1
|
1.0
|
|
CG
|
H:HIS125
|
4.4
|
20.0
|
1.0
|
|
CE
|
H:MET244
|
4.4
|
36.2
|
1.0
|
|
CB
|
H:MET244
|
4.6
|
38.1
|
1.0
|
|
Iron binding site 4 out
of 10 in 5xte
Go back to
Iron Binding Sites List in 5xte
Iron binding site 4 out
of 10 in the Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe401
b:3.5
occ:1.00
|
FE
|
J:HEM401
|
0.0
|
3.5
|
1.0
|
|
NC
|
J:HEM401
|
2.0
|
6.7
|
1.0
|
|
NA
|
J:HEM401
|
2.0
|
4.2
|
1.0
|
|
ND
|
J:HEM401
|
2.1
|
5.9
|
1.0
|
|
NB
|
J:HEM401
|
2.1
|
3.5
|
1.0
|
|
NE2
|
J:HIS182
|
2.4
|
7.0
|
1.0
|
|
NE2
|
J:HIS83
|
2.5
|
22.2
|
1.0
|
|
C1C
|
J:HEM401
|
3.0
|
2.2
|
1.0
|
|
CE1
|
J:HIS83
|
3.0
|
30.3
|
1.0
|
|
C4C
|
J:HEM401
|
3.0
|
6.2
|
1.0
|
|
C1A
|
J:HEM401
|
3.0
|
11.5
|
1.0
|
|
C4D
|
J:HEM401
|
3.1
|
6.3
|
1.0
|
|
C4A
|
J:HEM401
|
3.1
|
4.8
|
1.0
|
|
C4B
|
J:HEM401
|
3.1
|
2.4
|
1.0
|
|
C1D
|
J:HEM401
|
3.1
|
5.0
|
1.0
|
|
C1B
|
J:HEM401
|
3.1
|
5.3
|
1.0
|
|
CD2
|
J:HIS182
|
3.3
|
5.4
|
1.0
|
|
CE1
|
J:HIS182
|
3.4
|
2.2
|
1.0
|
|
CHA
|
J:HEM401
|
3.4
|
10.7
|
1.0
|
|
CHC
|
J:HEM401
|
3.4
|
2.2
|
1.0
|
|
CHD
|
J:HEM401
|
3.4
|
4.4
|
1.0
|
|
CHB
|
J:HEM401
|
3.5
|
3.2
|
1.0
|
|
CD2
|
J:HIS83
|
3.8
|
26.9
|
1.0
|
|
C2C
|
J:HEM401
|
4.2
|
2.2
|
1.0
|
|
C3C
|
J:HEM401
|
4.3
|
3.5
|
1.0
|
|
C2A
|
J:HEM401
|
4.3
|
7.4
|
1.0
|
|
C3A
|
J:HEM401
|
4.3
|
6.0
|
1.0
|
|
ND1
|
J:HIS83
|
4.3
|
28.5
|
1.0
|
|
C3D
|
J:HEM401
|
4.3
|
8.5
|
1.0
|
|
C2D
|
J:HEM401
|
4.3
|
2.2
|
1.0
|
|
C3B
|
J:HEM401
|
4.3
|
5.6
|
1.0
|
|
C2B
|
J:HEM401
|
4.3
|
2.2
|
1.0
|
|
CG
|
J:HIS182
|
4.4
|
2.2
|
1.0
|
|
ND1
|
J:HIS182
|
4.5
|
7.6
|
1.0
|
|
CG
|
J:HIS83
|
4.7
|
24.3
|
1.0
|
|
Iron binding site 5 out
of 10 in 5xte
Go back to
Iron Binding Sites List in 5xte
Iron binding site 5 out
of 10 in the Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe402
b:2.6
occ:1.00
|
FE
|
J:HEM402
|
0.0
|
2.6
|
1.0
|
|
NB
|
J:HEM402
|
2.0
|
6.7
|
1.0
|
|
NA
|
J:HEM402
|
2.1
|
4.5
|
1.0
|
|
NC
|
J:HEM402
|
2.1
|
2.2
|
1.0
|
|
ND
|
J:HEM402
|
2.1
|
2.2
|
1.0
|
|
NE2
|
J:HIS97
|
2.5
|
8.9
|
1.0
|
|
NE2
|
J:HIS196
|
2.5
|
2.2
|
1.0
|
|
C1B
|
J:HEM402
|
3.0
|
4.8
|
1.0
|
|
C4A
|
J:HEM402
|
3.0
|
2.2
|
1.0
|
|
C1A
|
J:HEM402
|
3.1
|
6.7
|
1.0
|
|
C4B
|
J:HEM402
|
3.1
|
5.5
|
1.0
|
|
C4C
|
J:HEM402
|
3.1
|
6.0
|
1.0
|
|
C1C
|
J:HEM402
|
3.1
|
6.2
|
1.0
|
|
C1D
|
J:HEM402
|
3.1
|
5.9
|
1.0
|
|
C4D
|
J:HEM402
|
3.1
|
6.0
|
1.0
|
|
CD2
|
J:HIS196
|
3.2
|
6.5
|
1.0
|
|
CD2
|
J:HIS97
|
3.3
|
5.7
|
1.0
|
|
CHB
|
J:HEM402
|
3.4
|
2.2
|
1.0
|
|
CHA
|
J:HEM402
|
3.4
|
7.2
|
1.0
|
|
CHD
|
J:HEM402
|
3.4
|
5.8
|
1.0
|
|
CHC
|
J:HEM402
|
3.4
|
5.7
|
1.0
|
|
CE1
|
J:HIS97
|
3.6
|
4.0
|
1.0
|
|
CE1
|
J:HIS196
|
3.7
|
7.3
|
1.0
|
|
C3A
|
J:HEM402
|
4.2
|
5.7
|
1.0
|
|
C2A
|
J:HEM402
|
4.3
|
6.3
|
1.0
|
|
C2B
|
J:HEM402
|
4.3
|
2.2
|
1.0
|
|
C3B
|
J:HEM402
|
4.3
|
5.9
|
1.0
|
|
C2C
|
J:HEM402
|
4.3
|
2.2
|
1.0
|
|
C3C
|
J:HEM402
|
4.3
|
2.2
|
1.0
|
|
C2D
|
J:HEM402
|
4.3
|
2.2
|
1.0
|
|
C3D
|
J:HEM402
|
4.3
|
6.3
|
1.0
|
|
CG
|
J:HIS196
|
4.4
|
6.7
|
1.0
|
|
CG
|
J:HIS97
|
4.5
|
2.2
|
1.0
|
|
ND1
|
J:HIS97
|
4.6
|
4.4
|
1.0
|
|
ND1
|
J:HIS196
|
4.6
|
6.3
|
1.0
|
|
Iron binding site 6 out
of 10 in 5xte
Go back to
Iron Binding Sites List in 5xte
Iron binding site 6 out
of 10 in the Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe301
b:31.2
occ:1.00
|
FE1
|
P:FES301
|
0.0
|
31.2
|
1.0
|
|
S2
|
P:FES301
|
2.2
|
34.1
|
1.0
|
|
S1
|
P:FES301
|
2.2
|
33.8
|
1.0
|
|
SG
|
P:CYS236
|
3.0
|
35.0
|
1.0
|
|
FE2
|
P:FES301
|
3.1
|
33.2
|
1.0
|
|
SG
|
P:CYS217
|
3.2
|
21.6
|
1.0
|
|
CB
|
P:CYS217
|
3.6
|
24.1
|
1.0
|
|
CB
|
P:HIS219
|
3.7
|
21.9
|
1.0
|
|
N
|
P:LEU220
|
4.0
|
33.1
|
1.0
|
|
CB
|
P:CYS222
|
4.1
|
38.1
|
1.0
|
|
CB
|
P:CYS236
|
4.1
|
39.5
|
1.0
|
|
OG
|
P:SER241
|
4.1
|
32.5
|
1.0
|
|
ND1
|
P:HIS219
|
4.2
|
26.5
|
1.0
|
|
CG
|
P:HIS219
|
4.4
|
19.9
|
1.0
|
|
N
|
P:CYS222
|
4.5
|
38.1
|
1.0
|
|
CB
|
P:CYS238
|
4.5
|
43.8
|
1.0
|
|
CA
|
P:HIS219
|
4.7
|
33.1
|
1.0
|
|
O
|
P:CYS222
|
4.7
|
41.0
|
1.0
|
|
CA
|
P:CYS222
|
4.7
|
40.2
|
1.0
|
|
SG
|
P:CYS222
|
4.8
|
39.7
|
1.0
|
|
N
|
P:HIS219
|
4.8
|
33.5
|
1.0
|
|
CB
|
P:SER241
|
4.8
|
42.7
|
1.0
|
|
CA
|
P:LEU220
|
4.8
|
29.4
|
1.0
|
|
CB
|
P:LEU220
|
4.8
|
24.4
|
1.0
|
|
C
|
P:HIS219
|
4.9
|
36.3
|
1.0
|
|
N
|
P:GLY221
|
4.9
|
27.1
|
1.0
|
|
Iron binding site 7 out
of 10 in 5xte
Go back to
Iron Binding Sites List in 5xte
Iron binding site 7 out
of 10 in the Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe301
b:33.2
occ:1.00
|
FE2
|
P:FES301
|
0.0
|
33.2
|
1.0
|
|
S2
|
P:FES301
|
2.2
|
34.1
|
1.0
|
|
S1
|
P:FES301
|
2.2
|
33.8
|
1.0
|
|
ND1
|
P:HIS239
|
2.5
|
36.4
|
1.0
|
|
ND1
|
P:HIS219
|
2.9
|
26.5
|
1.0
|
|
CG
|
P:HIS239
|
2.9
|
40.2
|
1.0
|
|
FE1
|
P:FES301
|
3.1
|
31.2
|
1.0
|
|
CB
|
P:HIS239
|
3.1
|
45.2
|
1.0
|
|
CE1
|
P:HIS219
|
3.4
|
23.8
|
1.0
|
|
CE1
|
P:HIS239
|
3.4
|
38.3
|
1.0
|
|
CD1
|
P:LEU220
|
3.6
|
28.5
|
1.0
|
|
CG
|
P:HIS219
|
3.8
|
19.9
|
1.0
|
|
CG
|
P:LEU220
|
3.9
|
22.4
|
1.0
|
|
CD2
|
P:HIS239
|
3.9
|
40.9
|
1.0
|
|
CB
|
P:LEU220
|
4.0
|
24.4
|
1.0
|
|
NE2
|
P:HIS239
|
4.1
|
39.4
|
1.0
|
|
N
|
P:HIS239
|
4.2
|
48.0
|
1.0
|
|
CA
|
P:HIS239
|
4.2
|
48.1
|
1.0
|
|
CB
|
P:HIS219
|
4.3
|
21.9
|
1.0
|
|
CB
|
P:CYS238
|
4.4
|
43.8
|
1.0
|
|
NE2
|
P:HIS219
|
4.4
|
22.6
|
1.0
|
|
C
|
P:CYS238
|
4.5
|
50.1
|
1.0
|
|
N
|
P:LEU220
|
4.5
|
33.1
|
1.0
|
|
CD2
|
P:HIS219
|
4.6
|
25.1
|
1.0
|
|
O
|
P:CYS238
|
4.8
|
55.2
|
1.0
|
|
CA
|
P:LEU220
|
4.8
|
29.4
|
1.0
|
|
CG
|
P:PRO253
|
4.9
|
60.5
|
1.0
|
|
OG
|
P:SER241
|
5.0
|
32.5
|
1.0
|
|
Iron binding site 8 out
of 10 in 5xte
Go back to
Iron Binding Sites List in 5xte
Iron binding site 8 out
of 10 in the Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:Fe402
b:37.1
occ:1.00
|
FE
|
U:HEC402
|
0.0
|
37.1
|
1.0
|
|
NA
|
U:HEC402
|
2.0
|
40.5
|
1.0
|
|
NC
|
U:HEC402
|
2.0
|
37.2
|
1.0
|
|
ND
|
U:HEC402
|
2.1
|
43.2
|
1.0
|
|
NB
|
U:HEC402
|
2.1
|
34.0
|
1.0
|
|
NE2
|
U:HIS125
|
2.6
|
20.0
|
1.0
|
|
SD
|
U:MET244
|
2.9
|
23.4
|
1.0
|
|
C4A
|
U:HEC402
|
3.0
|
40.6
|
1.0
|
|
C1B
|
U:HEC402
|
3.0
|
33.9
|
1.0
|
|
C1A
|
U:HEC402
|
3.0
|
44.7
|
1.0
|
|
C4B
|
U:HEC402
|
3.0
|
34.3
|
1.0
|
|
C4D
|
U:HEC402
|
3.1
|
44.4
|
1.0
|
|
C1D
|
U:HEC402
|
3.1
|
41.4
|
1.0
|
|
CE1
|
U:HIS125
|
3.1
|
20.0
|
1.0
|
|
C4C
|
U:HEC402
|
3.1
|
35.5
|
1.0
|
|
C1C
|
U:HEC402
|
3.1
|
36.1
|
1.0
|
|
CHB
|
U:HEC402
|
3.3
|
36.3
|
1.0
|
|
CHA
|
U:HEC402
|
3.4
|
45.1
|
1.0
|
|
CHD
|
U:HEC402
|
3.4
|
36.0
|
1.0
|
|
CHC
|
U:HEC402
|
3.4
|
36.2
|
1.0
|
|
CD2
|
U:HIS125
|
3.8
|
20.0
|
1.0
|
|
CG
|
U:MET244
|
4.1
|
35.9
|
1.0
|
|
CE
|
U:MET244
|
4.2
|
36.2
|
1.0
|
|
C2B
|
U:HEC402
|
4.2
|
34.4
|
1.0
|
|
C3A
|
U:HEC402
|
4.2
|
41.4
|
1.0
|
|
C2A
|
U:HEC402
|
4.2
|
44.0
|
1.0
|
|
C3B
|
U:HEC402
|
4.2
|
35.5
|
1.0
|
|
ND1
|
U:HIS125
|
4.2
|
20.0
|
1.0
|
|
C3C
|
U:HEC402
|
4.3
|
35.5
|
1.0
|
|
C2C
|
U:HEC402
|
4.3
|
36.1
|
1.0
|
|
C2D
|
U:HEC402
|
4.3
|
44.4
|
1.0
|
|
C3D
|
U:HEC402
|
4.3
|
45.5
|
1.0
|
|
CB
|
U:MET244
|
4.6
|
38.1
|
1.0
|
|
CG
|
U:HIS125
|
4.6
|
20.0
|
1.0
|
|
Iron binding site 9 out
of 10 in 5xte
Go back to
Iron Binding Sites List in 5xte
Iron binding site 9 out
of 10 in the Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
V:Fe401
b:3.5
occ:1.00
|
FE
|
V:HEM401
|
0.0
|
3.5
|
1.0
|
|
NB
|
V:HEM401
|
2.0
|
3.5
|
1.0
|
|
NA
|
V:HEM401
|
2.0
|
4.2
|
1.0
|
|
NC
|
V:HEM401
|
2.0
|
6.7
|
1.0
|
|
ND
|
V:HEM401
|
2.1
|
5.9
|
1.0
|
|
NE2
|
V:HIS83
|
2.4
|
22.2
|
1.0
|
|
CE1
|
V:HIS83
|
2.6
|
30.3
|
1.0
|
|
NE2
|
V:HIS182
|
2.7
|
7.0
|
1.0
|
|
C4B
|
V:HEM401
|
3.0
|
2.4
|
1.0
|
|
C1C
|
V:HEM401
|
3.0
|
2.2
|
1.0
|
|
C1B
|
V:HEM401
|
3.1
|
5.3
|
1.0
|
|
C4A
|
V:HEM401
|
3.1
|
4.8
|
1.0
|
|
C1A
|
V:HEM401
|
3.1
|
11.5
|
1.0
|
|
C4C
|
V:HEM401
|
3.1
|
6.2
|
1.0
|
|
C4D
|
V:HEM401
|
3.1
|
6.3
|
1.0
|
|
C1D
|
V:HEM401
|
3.1
|
5.0
|
1.0
|
|
CE1
|
V:HIS182
|
3.3
|
2.2
|
1.0
|
|
CHC
|
V:HEM401
|
3.4
|
2.2
|
1.0
|
|
CHB
|
V:HEM401
|
3.4
|
3.2
|
1.0
|
|
CHA
|
V:HEM401
|
3.4
|
10.7
|
1.0
|
|
CHD
|
V:HEM401
|
3.5
|
4.4
|
1.0
|
|
CD2
|
V:HIS83
|
3.6
|
26.9
|
1.0
|
|
ND1
|
V:HIS83
|
3.9
|
28.5
|
1.0
|
|
CD2
|
V:HIS182
|
3.9
|
5.4
|
1.0
|
|
C2C
|
V:HEM401
|
4.3
|
2.2
|
1.0
|
|
C3B
|
V:HEM401
|
4.3
|
5.6
|
1.0
|
|
C2B
|
V:HEM401
|
4.3
|
2.2
|
1.0
|
|
C3A
|
V:HEM401
|
4.3
|
6.0
|
1.0
|
|
C3C
|
V:HEM401
|
4.3
|
3.5
|
1.0
|
|
C2A
|
V:HEM401
|
4.3
|
7.4
|
1.0
|
|
C3D
|
V:HEM401
|
4.3
|
8.5
|
1.0
|
|
C2D
|
V:HEM401
|
4.3
|
2.2
|
1.0
|
|
CG
|
V:HIS83
|
4.4
|
24.3
|
1.0
|
|
ND1
|
V:HIS182
|
4.5
|
7.6
|
1.0
|
|
O
|
V:GLN44
|
4.6
|
19.3
|
1.0
|
|
NE2
|
V:GLN44
|
4.7
|
28.4
|
1.0
|
|
CG
|
V:HIS182
|
4.9
|
2.2
|
1.0
|
|
Iron binding site 10 out
of 10 in 5xte
Go back to
Iron Binding Sites List in 5xte
Iron binding site 10 out
of 10 in the Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Cryo-Em Structure of Human Respiratory Complex III (Cytochrome BC1 Complex) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
V:Fe402
b:2.6
occ:1.00
|
FE
|
V:HEM402
|
0.0
|
2.6
|
1.0
|
|
NB
|
V:HEM402
|
2.0
|
6.7
|
1.0
|
|
NA
|
V:HEM402
|
2.0
|
4.5
|
1.0
|
|
NC
|
V:HEM402
|
2.0
|
2.2
|
1.0
|
|
ND
|
V:HEM402
|
2.1
|
2.2
|
1.0
|
|
NE2
|
V:HIS97
|
2.5
|
8.9
|
1.0
|
|
NE2
|
V:HIS196
|
2.7
|
2.2
|
1.0
|
|
C1B
|
V:HEM402
|
3.0
|
4.8
|
1.0
|
|
C4A
|
V:HEM402
|
3.0
|
2.2
|
1.0
|
|
C1A
|
V:HEM402
|
3.0
|
6.7
|
1.0
|
|
C4C
|
V:HEM402
|
3.1
|
6.0
|
1.0
|
|
C4B
|
V:HEM402
|
3.1
|
5.5
|
1.0
|
|
C4D
|
V:HEM402
|
3.1
|
6.0
|
1.0
|
|
C1C
|
V:HEM402
|
3.1
|
6.2
|
1.0
|
|
C1D
|
V:HEM402
|
3.1
|
5.9
|
1.0
|
|
CD2
|
V:HIS196
|
3.1
|
6.5
|
1.0
|
|
CHA
|
V:HEM402
|
3.4
|
7.2
|
1.0
|
|
CHB
|
V:HEM402
|
3.4
|
2.2
|
1.0
|
|
CHD
|
V:HEM402
|
3.4
|
5.8
|
1.0
|
|
CHC
|
V:HEM402
|
3.4
|
5.7
|
1.0
|
|
CD2
|
V:HIS97
|
3.5
|
5.7
|
1.0
|
|
CE1
|
V:HIS97
|
3.5
|
4.0
|
1.0
|
|
CE1
|
V:HIS196
|
3.9
|
7.3
|
1.0
|
|
C3A
|
V:HEM402
|
4.2
|
5.7
|
1.0
|
|
C2A
|
V:HEM402
|
4.3
|
6.3
|
1.0
|
|
C2B
|
V:HEM402
|
4.3
|
2.2
|
1.0
|
|
C3B
|
V:HEM402
|
4.3
|
5.9
|
1.0
|
|
C3C
|
V:HEM402
|
4.3
|
2.2
|
1.0
|
|
C2C
|
V:HEM402
|
4.3
|
2.2
|
1.0
|
|
C3D
|
V:HEM402
|
4.3
|
6.3
|
1.0
|
|
C2D
|
V:HEM402
|
4.3
|
2.2
|
1.0
|
|
CG
|
V:HIS196
|
4.4
|
6.7
|
1.0
|
|
ND1
|
V:HIS97
|
4.6
|
4.4
|
1.0
|
|
CG
|
V:HIS97
|
4.6
|
2.2
|
1.0
|
|
ND1
|
V:HIS196
|
4.7
|
6.3
|
1.0
|
|
Reference:
R.Guo,
S.Zong,
M.Wu,
J.Gu,
M.Yang.
Architecture of Human Mitochondrial Respiratory Megacomplex I2III2IV2. Cell V. 170 1247 2017.
ISSN: ISSN 1097-4172
PubMed: 28844695
DOI: 10.1016/J.CELL.2017.07.050
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