Iron in PDB 6cyp: Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei
Enzymatic activity of Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei
All present enzymatic activity of Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei:
1.15.1.1;
Protein crystallography data
The structure of Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei, PDB code: 6cyp
was solved by
E.Mendoza Rengifo,
J.R.S.Ferreira Jr.,
R.C.Garratt,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
47.10 /
2.00
|
|
Space group
|
P 2 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
73.430,
75.130,
241.780,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
15.9 /
18.9
|
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei
(pdb code 6cyp). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the
Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei, PDB code: 6cyp:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
Iron binding site 1 out
of 6 in 6cyp
Go back to
Iron Binding Sites List in 6cyp
Iron binding site 1 out
of 6 in the Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe301
b:29.8
occ:1.00
|
O
|
A:HOH443
|
2.0
|
25.5
|
1.0
|
|
OD2
|
A:ASP163
|
2.1
|
25.5
|
1.0
|
|
NE2
|
A:HIS30
|
2.1
|
24.6
|
1.0
|
|
NE2
|
A:HIS78
|
2.3
|
21.3
|
1.0
|
|
NE2
|
A:HIS167
|
2.3
|
25.6
|
1.0
|
|
CE1
|
A:HIS78
|
3.0
|
20.0
|
1.0
|
|
CE1
|
A:HIS30
|
3.0
|
21.3
|
1.0
|
|
HE1
|
A:HIS78
|
3.1
|
24.0
|
1.0
|
|
CD2
|
A:HIS30
|
3.1
|
20.1
|
1.0
|
|
HE1
|
A:HIS30
|
3.2
|
25.5
|
1.0
|
|
CG
|
A:ASP163
|
3.2
|
21.4
|
1.0
|
|
CE1
|
A:HIS167
|
3.3
|
25.2
|
1.0
|
|
HD2
|
A:HIS30
|
3.3
|
24.1
|
1.0
|
|
CD2
|
A:HIS167
|
3.4
|
26.1
|
1.0
|
|
CD2
|
A:HIS78
|
3.4
|
21.4
|
1.0
|
|
HE1
|
A:HIS167
|
3.4
|
30.2
|
1.0
|
|
HE22
|
A:GLN149
|
3.4
|
26.5
|
1.0
|
|
HD2
|
A:HIS167
|
3.5
|
31.3
|
1.0
|
|
HZ2
|
A:TRP131
|
3.5
|
23.8
|
1.0
|
|
HD2
|
A:HIS78
|
3.6
|
25.6
|
1.0
|
|
OD1
|
A:ASP163
|
3.7
|
21.1
|
1.0
|
|
HB2
|
A:TRP165
|
3.7
|
23.7
|
1.0
|
|
ND1
|
A:HIS30
|
4.2
|
21.3
|
1.0
|
|
HE2
|
A:TYR38
|
4.2
|
29.1
|
1.0
|
|
CZ2
|
A:TRP131
|
4.2
|
19.8
|
1.0
|
|
HH
|
A:TYR38
|
4.2
|
32.6
|
1.0
|
|
ND1
|
A:HIS78
|
4.2
|
20.6
|
1.0
|
|
CG
|
A:HIS30
|
4.2
|
21.0
|
1.0
|
|
HB2
|
A:ALA168
|
4.2
|
25.2
|
1.0
|
|
NE2
|
A:GLN149
|
4.2
|
22.1
|
1.0
|
|
CG
|
A:HIS78
|
4.4
|
20.9
|
1.0
|
|
ND1
|
A:HIS167
|
4.4
|
25.3
|
1.0
|
|
CB
|
A:ASP163
|
4.4
|
21.6
|
1.0
|
|
HB2
|
A:ASP163
|
4.5
|
26.0
|
1.0
|
|
CG
|
A:HIS167
|
4.5
|
24.7
|
1.0
|
|
CB
|
A:TRP165
|
4.5
|
19.8
|
1.0
|
|
HE21
|
A:GLN149
|
4.6
|
26.5
|
1.0
|
|
CG
|
A:TRP165
|
4.6
|
19.3
|
1.0
|
|
HB3
|
A:ASP163
|
4.7
|
26.0
|
1.0
|
|
HH2
|
A:TRP131
|
4.7
|
23.2
|
1.0
|
|
HB3
|
A:TRP165
|
4.7
|
23.7
|
1.0
|
|
HB3
|
A:HIS34
|
4.7
|
24.9
|
1.0
|
|
CH2
|
A:TRP131
|
4.8
|
19.3
|
1.0
|
|
CD1
|
A:TRP165
|
4.8
|
19.1
|
1.0
|
|
HE1
|
A:TRP131
|
4.8
|
24.5
|
1.0
|
|
HD1
|
A:HIS30
|
4.9
|
25.5
|
1.0
|
|
HD1
|
A:TRP165
|
4.9
|
22.9
|
1.0
|
|
HD1
|
A:HIS78
|
5.0
|
24.8
|
1.0
|
|
CE2
|
A:TRP131
|
5.0
|
19.9
|
1.0
|
|
Iron binding site 2 out
of 6 in 6cyp
Go back to
Iron Binding Sites List in 6cyp
Iron binding site 2 out
of 6 in the Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe301
b:28.0
occ:1.00
|
O
|
B:HOH429
|
2.0
|
21.8
|
1.0
|
|
OD2
|
B:ASP163
|
2.1
|
18.1
|
1.0
|
|
NE2
|
B:HIS30
|
2.1
|
20.4
|
1.0
|
|
NE2
|
B:HIS167
|
2.3
|
18.5
|
1.0
|
|
NE2
|
B:HIS78
|
2.3
|
13.9
|
1.0
|
|
CE1
|
B:HIS30
|
3.0
|
15.9
|
1.0
|
|
CE1
|
B:HIS78
|
3.1
|
14.2
|
1.0
|
|
HE1
|
B:HIS78
|
3.1
|
17.0
|
1.0
|
|
CD2
|
B:HIS30
|
3.1
|
15.1
|
1.0
|
|
CG
|
B:ASP163
|
3.2
|
13.8
|
1.0
|
|
HE1
|
B:HIS30
|
3.2
|
19.1
|
1.0
|
|
CE1
|
B:HIS167
|
3.3
|
18.2
|
1.0
|
|
CD2
|
B:HIS167
|
3.3
|
18.0
|
1.0
|
|
HD2
|
B:HIS30
|
3.3
|
18.2
|
1.0
|
|
HE22
|
B:GLN149
|
3.4
|
16.7
|
1.0
|
|
HE1
|
B:HIS167
|
3.4
|
21.8
|
1.0
|
|
CD2
|
B:HIS78
|
3.4
|
14.8
|
1.0
|
|
HD2
|
B:HIS167
|
3.5
|
21.6
|
1.0
|
|
HZ2
|
B:TRP131
|
3.6
|
16.1
|
1.0
|
|
OD1
|
B:ASP163
|
3.7
|
13.1
|
1.0
|
|
HB2
|
B:TRP165
|
3.7
|
13.7
|
1.0
|
|
HD2
|
B:HIS78
|
3.7
|
17.8
|
1.0
|
|
ND1
|
B:HIS30
|
4.2
|
16.1
|
1.0
|
|
HH
|
B:TYR38
|
4.2
|
29.9
|
1.0
|
|
HE2
|
B:TYR38
|
4.2
|
19.1
|
1.0
|
|
NE2
|
B:GLN149
|
4.2
|
13.9
|
1.0
|
|
CG
|
B:HIS30
|
4.2
|
15.5
|
1.0
|
|
CZ2
|
B:TRP131
|
4.3
|
13.4
|
1.0
|
|
HB2
|
B:ALA168
|
4.3
|
18.5
|
1.0
|
|
ND1
|
B:HIS78
|
4.3
|
13.4
|
1.0
|
|
ND1
|
B:HIS167
|
4.4
|
18.0
|
1.0
|
|
CB
|
B:ASP163
|
4.4
|
12.3
|
1.0
|
|
CG
|
B:HIS167
|
4.5
|
17.6
|
1.0
|
|
CB
|
B:TRP165
|
4.5
|
11.4
|
1.0
|
|
HB2
|
B:ASP163
|
4.5
|
14.7
|
1.0
|
|
CG
|
B:HIS78
|
4.5
|
14.0
|
1.0
|
|
HE21
|
B:GLN149
|
4.5
|
16.7
|
1.0
|
|
CG
|
B:TRP165
|
4.6
|
11.6
|
1.0
|
|
HB3
|
B:TRP165
|
4.7
|
13.7
|
1.0
|
|
HB3
|
B:ASP163
|
4.7
|
14.7
|
1.0
|
|
HB3
|
B:HIS34
|
4.8
|
20.0
|
1.0
|
|
HH2
|
B:TRP131
|
4.8
|
16.3
|
1.0
|
|
CD1
|
B:TRP165
|
4.8
|
13.4
|
1.0
|
|
HE1
|
B:TRP131
|
4.9
|
15.3
|
1.0
|
|
CH2
|
B:TRP131
|
4.9
|
13.6
|
1.0
|
|
HD1
|
B:TRP165
|
4.9
|
16.1
|
1.0
|
|
HD1
|
B:HIS30
|
4.9
|
19.4
|
1.0
|
|
Iron binding site 3 out
of 6 in 6cyp
Go back to
Iron Binding Sites List in 6cyp
Iron binding site 3 out
of 6 in the Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe301
b:24.2
occ:1.00
|
O
|
C:HOH461
|
2.0
|
16.9
|
1.0
|
|
OD2
|
C:ASP163
|
2.1
|
17.1
|
1.0
|
|
NE2
|
C:HIS30
|
2.2
|
15.8
|
1.0
|
|
NE2
|
C:HIS167
|
2.2
|
16.0
|
1.0
|
|
NE2
|
C:HIS78
|
2.4
|
14.1
|
1.0
|
|
O
|
C:HOH475
|
2.5
|
31.9
|
1.0
|
|
CE1
|
C:HIS30
|
3.1
|
15.4
|
1.0
|
|
CE1
|
C:HIS167
|
3.2
|
16.3
|
1.0
|
|
CD2
|
C:HIS30
|
3.2
|
15.8
|
1.0
|
|
CE1
|
C:HIS78
|
3.2
|
13.4
|
1.0
|
|
CD2
|
C:HIS167
|
3.2
|
15.8
|
1.0
|
|
HE1
|
C:HIS78
|
3.2
|
16.1
|
1.0
|
|
CG
|
C:ASP163
|
3.2
|
13.7
|
1.0
|
|
HE1
|
C:HIS30
|
3.2
|
18.5
|
1.0
|
|
HE1
|
C:HIS167
|
3.3
|
19.6
|
1.0
|
|
HD2
|
C:HIS167
|
3.4
|
19.0
|
1.0
|
|
HD2
|
C:HIS30
|
3.4
|
19.0
|
1.0
|
|
HE22
|
C:GLN149
|
3.5
|
17.2
|
1.0
|
|
CD2
|
C:HIS78
|
3.5
|
14.3
|
1.0
|
|
HB2
|
C:TRP165
|
3.6
|
14.1
|
1.0
|
|
OD1
|
C:ASP163
|
3.7
|
13.5
|
1.0
|
|
HZ2
|
C:TRP131
|
3.7
|
14.6
|
1.0
|
|
HD2
|
C:HIS78
|
3.8
|
17.1
|
1.0
|
|
ND1
|
C:HIS30
|
4.2
|
16.1
|
1.0
|
|
HE2
|
C:TYR38
|
4.2
|
24.3
|
1.0
|
|
HB2
|
C:ALA168
|
4.2
|
16.7
|
1.0
|
|
CG
|
C:HIS30
|
4.3
|
15.5
|
1.0
|
|
ND1
|
C:HIS167
|
4.3
|
15.8
|
1.0
|
|
NE2
|
C:GLN149
|
4.3
|
14.3
|
1.0
|
|
CG
|
C:HIS167
|
4.3
|
15.0
|
1.0
|
|
CZ2
|
C:TRP131
|
4.4
|
12.2
|
1.0
|
|
ND1
|
C:HIS78
|
4.4
|
14.0
|
1.0
|
|
CB
|
C:TRP165
|
4.4
|
11.7
|
1.0
|
|
CB
|
C:ASP163
|
4.5
|
15.5
|
1.0
|
|
CG
|
C:TRP165
|
4.5
|
11.7
|
1.0
|
|
HB2
|
C:ASP163
|
4.5
|
18.6
|
1.0
|
|
CG
|
C:HIS78
|
4.6
|
13.7
|
1.0
|
|
HE21
|
C:GLN149
|
4.6
|
17.2
|
1.0
|
|
HB3
|
C:TRP165
|
4.6
|
14.1
|
1.0
|
|
HB3
|
C:ASP163
|
4.7
|
18.6
|
1.0
|
|
HB3
|
C:HIS34
|
4.7
|
22.8
|
1.0
|
|
CD1
|
C:TRP165
|
4.8
|
11.7
|
1.0
|
|
HD1
|
C:TRP165
|
4.9
|
14.0
|
1.0
|
|
HE1
|
C:TRP131
|
4.9
|
14.1
|
1.0
|
|
HH2
|
C:TRP131
|
4.9
|
15.2
|
1.0
|
|
OH
|
C:TYR38
|
4.9
|
28.7
|
1.0
|
|
HD1
|
C:HIS30
|
4.9
|
19.3
|
1.0
|
|
CD2
|
C:TRP165
|
5.0
|
12.1
|
1.0
|
|
Iron binding site 4 out
of 6 in 6cyp
Go back to
Iron Binding Sites List in 6cyp
Iron binding site 4 out
of 6 in the Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe301
b:27.3
occ:1.00
|
O
|
D:HOH434
|
2.0
|
24.8
|
1.0
|
|
OD2
|
D:ASP163
|
2.0
|
23.1
|
1.0
|
|
NE2
|
D:HIS30
|
2.2
|
23.2
|
1.0
|
|
NE2
|
D:HIS167
|
2.3
|
21.3
|
1.0
|
|
NE2
|
D:HIS78
|
2.4
|
18.9
|
1.0
|
|
CE1
|
D:HIS30
|
3.0
|
20.5
|
1.0
|
|
CG
|
D:ASP163
|
3.1
|
20.2
|
1.0
|
|
HE1
|
D:HIS30
|
3.2
|
24.6
|
1.0
|
|
CE1
|
D:HIS78
|
3.2
|
18.9
|
1.0
|
|
HE1
|
D:HIS78
|
3.2
|
22.7
|
1.0
|
|
CD2
|
D:HIS30
|
3.2
|
20.3
|
1.0
|
|
CE1
|
D:HIS167
|
3.3
|
22.1
|
1.0
|
|
CD2
|
D:HIS167
|
3.3
|
21.4
|
1.0
|
|
HE1
|
D:HIS167
|
3.4
|
26.5
|
1.0
|
|
HD2
|
D:HIS30
|
3.4
|
24.3
|
1.0
|
|
HE22
|
D:GLN149
|
3.4
|
23.6
|
1.0
|
|
HD2
|
D:HIS167
|
3.5
|
25.6
|
1.0
|
|
CD2
|
D:HIS78
|
3.5
|
20.5
|
1.0
|
|
HZ2
|
D:TRP131
|
3.6
|
23.5
|
1.0
|
|
OD1
|
D:ASP163
|
3.6
|
18.2
|
1.0
|
|
HB2
|
D:TRP165
|
3.6
|
22.9
|
1.0
|
|
HD2
|
D:HIS78
|
3.8
|
24.6
|
1.0
|
|
ND1
|
D:HIS30
|
4.2
|
21.5
|
1.0
|
|
HB2
|
D:ALA168
|
4.2
|
24.9
|
1.0
|
|
HH
|
D:TYR38
|
4.2
|
33.2
|
1.0
|
|
NE2
|
D:GLN149
|
4.2
|
19.6
|
1.0
|
|
HE2
|
D:TYR38
|
4.2
|
23.6
|
1.0
|
|
CZ2
|
D:TRP131
|
4.3
|
19.6
|
1.0
|
|
CG
|
D:HIS30
|
4.3
|
21.5
|
1.0
|
|
ND1
|
D:HIS78
|
4.4
|
19.2
|
1.0
|
|
CB
|
D:ASP163
|
4.4
|
19.6
|
1.0
|
|
HB2
|
D:ASP163
|
4.4
|
23.6
|
1.0
|
|
ND1
|
D:HIS167
|
4.4
|
20.9
|
1.0
|
|
CB
|
D:TRP165
|
4.4
|
19.1
|
1.0
|
|
CG
|
D:HIS167
|
4.5
|
20.9
|
1.0
|
|
CG
|
D:TRP165
|
4.5
|
18.2
|
1.0
|
|
HE21
|
D:GLN149
|
4.5
|
23.6
|
1.0
|
|
CG
|
D:HIS78
|
4.6
|
19.5
|
1.0
|
|
HB3
|
D:ASP163
|
4.6
|
23.6
|
1.0
|
|
HB3
|
D:TRP165
|
4.7
|
22.9
|
1.0
|
|
CD1
|
D:TRP165
|
4.7
|
18.2
|
1.0
|
|
HB3
|
D:HIS34
|
4.8
|
24.9
|
1.0
|
|
HH2
|
D:TRP131
|
4.8
|
22.4
|
1.0
|
|
HD1
|
D:TRP165
|
4.8
|
21.9
|
1.0
|
|
HE1
|
D:TRP131
|
4.8
|
23.6
|
1.0
|
|
CH2
|
D:TRP131
|
4.9
|
18.7
|
1.0
|
|
HD1
|
D:HIS30
|
4.9
|
25.8
|
1.0
|
|
CE2
|
D:TRP131
|
5.0
|
18.2
|
1.0
|
|
Iron binding site 5 out
of 6 in 6cyp
Go back to
Iron Binding Sites List in 6cyp
Iron binding site 5 out
of 6 in the Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe301
b:27.9
occ:1.00
|
OD2
|
E:ASP163
|
2.1
|
20.5
|
1.0
|
|
O
|
E:HOH460
|
2.1
|
23.3
|
1.0
|
|
NE2
|
E:HIS30
|
2.2
|
17.5
|
1.0
|
|
NE2
|
E:HIS167
|
2.4
|
19.7
|
1.0
|
|
NE2
|
E:HIS78
|
2.4
|
19.0
|
1.0
|
|
CE1
|
E:HIS30
|
3.1
|
18.0
|
1.0
|
|
CG
|
E:ASP163
|
3.2
|
15.9
|
1.0
|
|
CD2
|
E:HIS30
|
3.2
|
18.4
|
1.0
|
|
CE1
|
E:HIS78
|
3.2
|
18.6
|
1.0
|
|
HE1
|
E:HIS78
|
3.3
|
22.3
|
1.0
|
|
HE1
|
E:HIS30
|
3.3
|
21.6
|
1.0
|
|
CE1
|
E:HIS167
|
3.3
|
20.3
|
1.0
|
|
HE1
|
E:HIS167
|
3.4
|
24.4
|
1.0
|
|
HD2
|
E:HIS30
|
3.4
|
22.0
|
1.0
|
|
CD2
|
E:HIS167
|
3.4
|
20.8
|
1.0
|
|
HE22
|
E:GLN149
|
3.4
|
22.3
|
1.0
|
|
CD2
|
E:HIS78
|
3.5
|
19.9
|
1.0
|
|
HD2
|
E:HIS167
|
3.6
|
25.0
|
1.0
|
|
HZ2
|
E:TRP131
|
3.6
|
20.6
|
1.0
|
|
OD1
|
E:ASP163
|
3.6
|
15.6
|
1.0
|
|
HB2
|
E:TRP165
|
3.6
|
18.5
|
1.0
|
|
HD2
|
E:HIS78
|
3.8
|
23.9
|
1.0
|
|
HH
|
E:TYR38
|
4.1
|
37.9
|
1.0
|
|
HB2
|
E:ALA168
|
4.2
|
21.3
|
1.0
|
|
NE2
|
E:GLN149
|
4.2
|
18.5
|
1.0
|
|
ND1
|
E:HIS30
|
4.2
|
18.4
|
1.0
|
|
HE2
|
E:TYR38
|
4.2
|
30.6
|
1.0
|
|
CZ2
|
E:TRP131
|
4.3
|
17.1
|
1.0
|
|
CG
|
E:HIS30
|
4.3
|
19.0
|
1.0
|
|
CB
|
E:ASP163
|
4.4
|
15.9
|
1.0
|
|
ND1
|
E:HIS78
|
4.4
|
18.7
|
1.0
|
|
ND1
|
E:HIS167
|
4.4
|
20.2
|
1.0
|
|
CB
|
E:TRP165
|
4.4
|
15.4
|
1.0
|
|
HB2
|
E:ASP163
|
4.5
|
19.1
|
1.0
|
|
CG
|
E:TRP165
|
4.5
|
15.5
|
1.0
|
|
CG
|
E:HIS167
|
4.5
|
20.7
|
1.0
|
|
HE21
|
E:GLN149
|
4.5
|
22.3
|
1.0
|
|
CG
|
E:HIS78
|
4.6
|
19.8
|
1.0
|
|
HB3
|
E:ASP163
|
4.6
|
19.1
|
1.0
|
|
HB3
|
E:TRP165
|
4.7
|
18.5
|
1.0
|
|
CD1
|
E:TRP165
|
4.7
|
15.5
|
1.0
|
|
HB3
|
E:HIS34
|
4.7
|
28.2
|
1.0
|
|
HE1
|
E:TRP131
|
4.8
|
19.8
|
1.0
|
|
HD1
|
E:TRP165
|
4.8
|
18.6
|
1.0
|
|
HH2
|
E:TRP131
|
4.9
|
20.3
|
1.0
|
|
CH2
|
E:TRP131
|
5.0
|
16.9
|
1.0
|
|
CE2
|
E:TRP131
|
5.0
|
16.3
|
1.0
|
|
OH
|
E:TYR38
|
5.0
|
31.6
|
1.0
|
|
HD1
|
E:HIS30
|
5.0
|
22.0
|
1.0
|
|
CD2
|
E:TRP165
|
5.0
|
16.3
|
1.0
|
|
Iron binding site 6 out
of 6 in 6cyp
Go back to
Iron Binding Sites List in 6cyp
Iron binding site 6 out
of 6 in the Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure Analysis of the H75I Mutant of Superoxide Dismutase From Trichoderma Reesei within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe301
b:29.9
occ:1.00
|
OD2
|
F:ASP163
|
2.0
|
25.7
|
1.0
|
|
O
|
F:HOH546
|
2.1
|
27.0
|
1.0
|
|
NE2
|
F:HIS30
|
2.1
|
27.4
|
1.0
|
|
NE2
|
F:HIS167
|
2.2
|
27.8
|
1.0
|
|
NE2
|
F:HIS78
|
2.4
|
21.8
|
1.0
|
|
CE1
|
F:HIS30
|
3.0
|
23.8
|
1.0
|
|
HE1
|
F:HIS30
|
3.1
|
28.5
|
1.0
|
|
CD2
|
F:HIS30
|
3.1
|
24.1
|
1.0
|
|
CG
|
F:ASP163
|
3.2
|
20.4
|
1.0
|
|
CE1
|
F:HIS167
|
3.2
|
30.0
|
1.0
|
|
CE1
|
F:HIS78
|
3.2
|
21.6
|
1.0
|
|
CD2
|
F:HIS167
|
3.2
|
28.1
|
1.0
|
|
HE1
|
F:HIS78
|
3.3
|
25.9
|
1.0
|
|
HD2
|
F:HIS30
|
3.4
|
28.9
|
1.0
|
|
HE1
|
F:HIS167
|
3.4
|
36.0
|
1.0
|
|
HD2
|
F:HIS167
|
3.4
|
33.7
|
1.0
|
|
CD2
|
F:HIS78
|
3.4
|
22.2
|
1.0
|
|
HE22
|
F:GLN149
|
3.5
|
25.8
|
1.0
|
|
HZ2
|
F:TRP131
|
3.6
|
22.8
|
1.0
|
|
HB2
|
F:TRP165
|
3.6
|
22.8
|
1.0
|
|
HD2
|
F:HIS78
|
3.7
|
26.6
|
1.0
|
|
OD1
|
F:ASP163
|
3.7
|
19.3
|
1.0
|
|
ND1
|
F:HIS30
|
4.1
|
24.4
|
1.0
|
|
HB2
|
F:ALA168
|
4.1
|
28.8
|
1.0
|
|
CG
|
F:HIS30
|
4.2
|
24.7
|
1.0
|
|
CZ2
|
F:TRP131
|
4.2
|
19.0
|
1.0
|
|
HE2
|
F:TYR38
|
4.3
|
29.6
|
1.0
|
|
ND1
|
F:HIS167
|
4.3
|
27.8
|
1.0
|
|
NE2
|
F:GLN149
|
4.4
|
21.5
|
1.0
|
|
CG
|
F:HIS167
|
4.4
|
26.5
|
1.0
|
|
CB
|
F:TRP165
|
4.4
|
19.0
|
1.0
|
|
ND1
|
F:HIS78
|
4.4
|
21.6
|
1.0
|
|
HH
|
F:TYR38
|
4.4
|
35.7
|
1.0
|
|
CB
|
F:ASP163
|
4.4
|
19.6
|
1.0
|
|
HB2
|
F:ASP163
|
4.4
|
23.5
|
1.0
|
|
CG
|
F:HIS78
|
4.5
|
22.1
|
1.0
|
|
CG
|
F:TRP165
|
4.5
|
18.9
|
1.0
|
|
HB3
|
F:TRP165
|
4.6
|
22.8
|
1.0
|
|
HB3
|
F:ASP163
|
4.6
|
23.5
|
1.0
|
|
HE21
|
F:GLN149
|
4.7
|
25.8
|
1.0
|
|
HB3
|
F:HIS34
|
4.8
|
31.3
|
1.0
|
|
HH2
|
F:TRP131
|
4.8
|
23.2
|
1.0
|
|
CD1
|
F:TRP165
|
4.8
|
18.9
|
1.0
|
|
HD1
|
F:HIS30
|
4.8
|
29.4
|
1.0
|
|
HE1
|
F:TRP131
|
4.8
|
24.1
|
1.0
|
|
CH2
|
F:TRP131
|
4.9
|
19.4
|
1.0
|
|
HD1
|
F:TRP165
|
4.9
|
22.6
|
1.0
|
|
Reference:
E.Mendoza Rengifo,
R.C.Garratt,
J.R.S.Ferreira Jr..
Crystal Structure of Mn Superoxide Dismutase Double Mutant (G74Q+Q149G) From Trichoderma Reesei To Be Published.
Page generated: Tue Aug 6 16:04:55 2024
|
