Iron in PDB 6cz8: The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate
Protein crystallography data
The structure of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate, PDB code: 6cz8
was solved by
N.R.Glasser,
D.K.Newman,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
39.10 /
1.78
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
233.162,
86.344,
148.221,
90.00,
127.67,
90.00
|
|
R / Rfree (%)
|
13.7 /
16.8
|
Other elements in 6cz8:
The structure of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Binding sites:
The binding sites of Iron atom in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate
(pdb code 6cz8). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 40 binding sites of Iron where determined in the
The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate, PDB code: 6cz8:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 40 in 6cz8
Go back to
Iron Binding Sites List in 6cz8
Iron binding site 1 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe901
b:17.6
occ:1.00
|
FE1
|
C:SF4901
|
0.0
|
17.6
|
1.0
|
|
S2
|
C:SF4901
|
2.2
|
17.3
|
1.0
|
|
S3
|
C:SF4901
|
2.3
|
17.7
|
1.0
|
|
S4
|
C:SF4901
|
2.4
|
17.5
|
1.0
|
|
SG
|
C:CYS64
|
2.4
|
17.1
|
1.0
|
|
FE2
|
C:SF4901
|
2.7
|
17.1
|
1.0
|
|
FE3
|
C:SF4901
|
2.7
|
17.4
|
1.0
|
|
FE4
|
C:SF4901
|
2.7
|
17.5
|
1.0
|
|
H
|
C:CYS64
|
2.8
|
20.6
|
1.0
|
|
HB2
|
C:SER66
|
3.1
|
20.7
|
1.0
|
|
N
|
C:CYS64
|
3.2
|
17.2
|
1.0
|
|
HH22
|
C:ARG98
|
3.3
|
19.9
|
1.0
|
|
CB
|
C:CYS64
|
3.6
|
16.5
|
1.0
|
|
NH2
|
C:ARG98
|
3.6
|
16.6
|
1.0
|
|
HB3
|
C:CYS64
|
3.8
|
19.8
|
1.0
|
|
HH12
|
C:ARG98
|
3.8
|
20.4
|
1.0
|
|
CA
|
C:CYS64
|
3.8
|
16.5
|
1.0
|
|
C
|
C:GLY63
|
3.8
|
19.4
|
1.0
|
|
HA3
|
C:GLY63
|
3.9
|
22.9
|
1.0
|
|
S1
|
C:SF4901
|
3.9
|
17.7
|
1.0
|
|
HH21
|
C:ARG98
|
4.0
|
19.9
|
1.0
|
|
O
|
C:CYS64
|
4.0
|
17.2
|
1.0
|
|
CZ
|
C:ARG98
|
4.0
|
16.5
|
1.0
|
|
HG
|
C:SER66
|
4.0
|
21.2
|
1.0
|
|
CB
|
C:SER66
|
4.0
|
17.2
|
1.0
|
|
NH1
|
C:ARG98
|
4.1
|
17.0
|
1.0
|
|
H
|
C:GLY63
|
4.2
|
20.5
|
1.0
|
|
H
|
C:SER66
|
4.2
|
20.0
|
1.0
|
|
C
|
C:CYS64
|
4.2
|
16.8
|
1.0
|
|
CA
|
C:GLY63
|
4.2
|
19.1
|
1.0
|
|
H
|
C:TRP67
|
4.3
|
20.0
|
1.0
|
|
OG
|
C:SER66
|
4.3
|
17.7
|
1.0
|
|
N
|
C:GLY63
|
4.4
|
17.1
|
1.0
|
|
HB2
|
C:CYS64
|
4.4
|
19.8
|
1.0
|
|
HB3
|
C:SER66
|
4.6
|
20.7
|
1.0
|
|
SG
|
C:CYS96
|
4.6
|
17.5
|
1.0
|
|
O
|
C:GLY63
|
4.6
|
17.6
|
1.0
|
|
HH11
|
C:ARG98
|
4.6
|
20.4
|
1.0
|
|
H
|
C:CYS68
|
4.6
|
20.2
|
1.0
|
|
HB
|
C:VAL235
|
4.6
|
19.2
|
1.0
|
|
HA
|
C:CYS64
|
4.7
|
19.8
|
1.0
|
|
HG23
|
C:VAL235
|
4.8
|
21.0
|
1.0
|
|
N
|
C:SER66
|
4.8
|
16.7
|
1.0
|
|
SG
|
C:CYS61
|
4.8
|
17.6
|
1.0
|
|
SG
|
C:CYS68
|
4.8
|
18.4
|
1.0
|
|
N
|
C:TRP67
|
4.9
|
16.7
|
1.0
|
|
NE
|
C:ARG98
|
4.9
|
17.0
|
1.0
|
|
CA
|
C:SER66
|
4.9
|
18.4
|
1.0
|
|
HB3
|
C:CYS61
|
5.0
|
22.1
|
1.0
|
|
Iron binding site 2 out
of 40 in 6cz8
Go back to
Iron Binding Sites List in 6cz8
Iron binding site 2 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe901
b:17.1
occ:1.00
|
FE2
|
C:SF4901
|
0.0
|
17.1
|
1.0
|
|
S1
|
C:SF4901
|
2.3
|
17.7
|
1.0
|
|
SG
|
C:CYS96
|
2.3
|
17.5
|
1.0
|
|
S4
|
C:SF4901
|
2.3
|
17.5
|
1.0
|
|
S3
|
C:SF4901
|
2.3
|
17.7
|
1.0
|
|
FE3
|
C:SF4901
|
2.7
|
17.4
|
1.0
|
|
FE1
|
C:SF4901
|
2.7
|
17.6
|
1.0
|
|
FE4
|
C:SF4901
|
2.7
|
17.5
|
1.0
|
|
HB3
|
C:CYS96
|
3.1
|
20.8
|
1.0
|
|
CB
|
C:CYS96
|
3.3
|
17.4
|
1.0
|
|
HH21
|
C:ARG98
|
3.5
|
19.9
|
1.0
|
|
HB2
|
C:ARG98
|
3.5
|
20.7
|
1.0
|
|
H
|
C:CYS96
|
3.6
|
21.1
|
1.0
|
|
NH2
|
C:ARG98
|
3.7
|
16.6
|
1.0
|
|
S2
|
C:SF4901
|
3.9
|
17.3
|
1.0
|
|
HH22
|
C:ARG98
|
3.9
|
19.9
|
1.0
|
|
CZ
|
C:ARG98
|
4.1
|
16.5
|
1.0
|
|
HE
|
C:ARG98
|
4.1
|
20.4
|
1.0
|
|
HB2
|
C:CYS96
|
4.1
|
20.8
|
1.0
|
|
HB
|
C:VAL235
|
4.1
|
19.2
|
1.0
|
|
H
|
C:ARG98
|
4.2
|
20.5
|
1.0
|
|
NE
|
C:ARG98
|
4.2
|
17.0
|
1.0
|
|
CA
|
C:CYS96
|
4.2
|
18.6
|
1.0
|
|
N
|
C:CYS96
|
4.3
|
17.6
|
1.0
|
|
H
|
C:GLN99
|
4.4
|
22.0
|
1.0
|
|
OG
|
C:SER236
|
4.4
|
16.8
|
1.0
|
|
HG
|
C:SER236
|
4.5
|
20.1
|
1.0
|
|
CB
|
C:ARG98
|
4.5
|
17.3
|
1.0
|
|
HZ1
|
C:LYS70
|
4.5
|
23.3
|
1.0
|
|
C
|
C:CYS96
|
4.5
|
20.3
|
1.0
|
|
HG
|
C:SER95
|
4.5
|
21.3
|
1.0
|
|
SG
|
C:CYS64
|
4.6
|
17.1
|
1.0
|
|
O
|
C:CYS96
|
4.6
|
17.7
|
1.0
|
|
HB3
|
C:GLN99
|
4.7
|
20.7
|
1.0
|
|
N
|
C:GLN99
|
4.7
|
18.4
|
1.0
|
|
N
|
C:ARG98
|
4.8
|
17.1
|
1.0
|
|
NH1
|
C:ARG98
|
4.8
|
17.0
|
1.0
|
|
SG
|
C:CYS68
|
4.8
|
18.4
|
1.0
|
|
OG
|
C:SER95
|
4.8
|
17.8
|
1.0
|
|
SG
|
C:CYS61
|
4.9
|
17.6
|
1.0
|
|
HB3
|
C:ARG98
|
4.9
|
20.7
|
1.0
|
|
HB2
|
C:SER66
|
4.9
|
20.7
|
1.0
|
|
HA3
|
C:GLY63
|
5.0
|
22.9
|
1.0
|
|
HH12
|
C:ARG98
|
5.0
|
20.4
|
1.0
|
|
Iron binding site 3 out
of 40 in 6cz8
Go back to
Iron Binding Sites List in 6cz8
Iron binding site 3 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe901
b:17.4
occ:1.00
|
FE3
|
C:SF4901
|
0.0
|
17.4
|
1.0
|
|
S4
|
C:SF4901
|
2.2
|
17.5
|
1.0
|
|
S1
|
C:SF4901
|
2.3
|
17.7
|
1.0
|
|
SG
|
C:CYS68
|
2.3
|
18.4
|
1.0
|
|
S2
|
C:SF4901
|
2.3
|
17.3
|
1.0
|
|
FE2
|
C:SF4901
|
2.7
|
17.1
|
1.0
|
|
FE4
|
C:SF4901
|
2.7
|
17.5
|
1.0
|
|
FE1
|
C:SF4901
|
2.7
|
17.6
|
1.0
|
|
HB2
|
C:CYS68
|
3.0
|
22.3
|
1.0
|
|
HB2
|
C:SER66
|
3.2
|
20.7
|
1.0
|
|
H
|
C:CYS68
|
3.2
|
20.2
|
1.0
|
|
CB
|
C:CYS68
|
3.2
|
18.6
|
1.0
|
|
HG
|
C:SER236
|
3.4
|
20.1
|
1.0
|
|
OG
|
C:SER236
|
3.6
|
16.8
|
1.0
|
|
S3
|
C:SF4901
|
3.8
|
17.7
|
1.0
|
|
HB3
|
C:CYS61
|
3.9
|
22.1
|
1.0
|
|
HB3
|
C:SER66
|
3.9
|
20.7
|
1.0
|
|
HE2
|
C:LYS70
|
4.0
|
23.3
|
1.0
|
|
N
|
C:CYS68
|
4.0
|
16.8
|
1.0
|
|
HB3
|
C:CYS68
|
4.0
|
22.3
|
1.0
|
|
CB
|
C:SER66
|
4.0
|
17.2
|
1.0
|
|
CA
|
C:CYS68
|
4.2
|
17.2
|
1.0
|
|
HZ1
|
C:LYS70
|
4.2
|
23.3
|
1.0
|
|
H
|
C:CYS96
|
4.5
|
21.1
|
1.0
|
|
H
|
C:SER236
|
4.5
|
19.8
|
1.0
|
|
SG
|
C:CYS64
|
4.6
|
17.1
|
1.0
|
|
HB3
|
C:CYS96
|
4.7
|
20.8
|
1.0
|
|
H
|
C:TRP67
|
4.7
|
20.0
|
1.0
|
|
SG
|
C:CYS61
|
4.7
|
17.6
|
1.0
|
|
HZ3
|
C:LYS70
|
4.7
|
23.3
|
1.0
|
|
CB
|
C:CYS61
|
4.7
|
18.4
|
1.0
|
|
CE
|
C:LYS70
|
4.7
|
19.4
|
1.0
|
|
O
|
C:HOH1122
|
4.7
|
20.8
|
1.0
|
|
NZ
|
C:LYS70
|
4.7
|
19.4
|
1.0
|
|
HA
|
C:CYS68
|
4.7
|
20.7
|
1.0
|
|
OG
|
C:SER66
|
4.8
|
17.7
|
1.0
|
|
N
|
C:TRP67
|
4.8
|
16.7
|
1.0
|
|
HB2
|
C:SER236
|
4.8
|
18.8
|
1.0
|
|
HE22
|
C:GLN234
|
4.8
|
22.3
|
1.0
|
|
CB
|
C:SER236
|
4.8
|
15.6
|
1.0
|
|
HB
|
C:VAL235
|
4.8
|
19.2
|
1.0
|
|
SG
|
C:CYS96
|
4.9
|
17.5
|
1.0
|
|
H
|
C:CYS64
|
4.9
|
20.6
|
1.0
|
|
HG
|
C:SER66
|
5.0
|
21.2
|
1.0
|
|
Iron binding site 4 out
of 40 in 6cz8
Go back to
Iron Binding Sites List in 6cz8
Iron binding site 4 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe901
b:17.5
occ:1.00
|
FE4
|
C:SF4901
|
0.0
|
17.5
|
1.0
|
|
S3
|
C:SF4901
|
2.2
|
17.7
|
1.0
|
|
SG
|
C:CYS61
|
2.3
|
17.6
|
1.0
|
|
S2
|
C:SF4901
|
2.3
|
17.3
|
1.0
|
|
S1
|
C:SF4901
|
2.3
|
17.7
|
1.0
|
|
FE3
|
C:SF4901
|
2.7
|
17.4
|
1.0
|
|
FE2
|
C:SF4901
|
2.7
|
17.1
|
1.0
|
|
FE1
|
C:SF4901
|
2.7
|
17.6
|
1.0
|
|
HB3
|
C:CYS61
|
2.9
|
22.1
|
1.0
|
|
H
|
C:GLY63
|
3.2
|
20.5
|
1.0
|
|
CB
|
C:CYS61
|
3.2
|
18.4
|
1.0
|
|
HA3
|
C:GLY63
|
3.6
|
22.9
|
1.0
|
|
HB2
|
C:CYS61
|
3.8
|
22.1
|
1.0
|
|
N
|
C:GLY63
|
3.9
|
17.1
|
1.0
|
|
HE3
|
C:LYS729
|
3.9
|
22.9
|
1.0
|
|
S4
|
C:SF4901
|
3.9
|
17.5
|
1.0
|
|
H
|
C:CYS64
|
4.0
|
20.6
|
1.0
|
|
HE2
|
C:LYS70
|
4.0
|
23.3
|
1.0
|
|
CA
|
C:GLY63
|
4.2
|
19.1
|
1.0
|
|
HB2
|
C:CYS68
|
4.2
|
22.3
|
1.0
|
|
HE3
|
C:LYS70
|
4.3
|
23.3
|
1.0
|
|
H
|
C:CYS68
|
4.3
|
20.2
|
1.0
|
|
HA
|
C:GLN99
|
4.4
|
21.2
|
1.0
|
|
CA
|
C:CYS61
|
4.4
|
17.0
|
1.0
|
|
C
|
C:CYS61
|
4.5
|
16.8
|
1.0
|
|
HB2
|
C:ARG98
|
4.5
|
20.7
|
1.0
|
|
HZ1
|
C:LYS70
|
4.5
|
23.3
|
1.0
|
|
N
|
C:CYS64
|
4.6
|
17.2
|
1.0
|
|
CE
|
C:LYS70
|
4.6
|
19.4
|
1.0
|
|
N
|
C:GLN62
|
4.6
|
17.1
|
1.0
|
|
HB3
|
C:GLN99
|
4.6
|
20.7
|
1.0
|
|
C
|
C:GLY63
|
4.7
|
19.4
|
1.0
|
|
H
|
C:GLN62
|
4.8
|
20.5
|
1.0
|
|
SG
|
C:CYS68
|
4.8
|
18.4
|
1.0
|
|
CE
|
C:LYS729
|
4.8
|
19.1
|
1.0
|
|
SG
|
C:CYS96
|
4.8
|
17.5
|
1.0
|
|
O
|
C:CYS61
|
4.9
|
16.7
|
1.0
|
|
HA
|
C:CYS61
|
4.9
|
20.4
|
1.0
|
|
C
|
C:GLN62
|
4.9
|
16.9
|
1.0
|
|
CB
|
C:CYS68
|
4.9
|
18.6
|
1.0
|
|
N
|
C:GLN99
|
5.0
|
18.4
|
1.0
|
|
Iron binding site 5 out
of 40 in 6cz8
Go back to
Iron Binding Sites List in 6cz8
Iron binding site 5 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe301
b:21.1
occ:1.00
|
FE1
|
D:SF4301
|
0.0
|
21.1
|
1.0
|
|
S4
|
D:SF4301
|
2.3
|
21.7
|
1.0
|
|
S2
|
D:SF4301
|
2.3
|
21.8
|
1.0
|
|
S3
|
D:SF4301
|
2.3
|
22.4
|
1.0
|
|
SG
|
D:CYS15
|
2.4
|
20.2
|
1.0
|
|
FE4
|
D:SF4301
|
2.7
|
23.4
|
1.0
|
|
FE3
|
D:SF4301
|
2.7
|
23.0
|
1.0
|
|
FE2
|
D:SF4301
|
2.8
|
21.6
|
1.0
|
|
H
|
D:CYS15
|
2.8
|
23.7
|
1.0
|
|
H
|
D:GLY17
|
3.3
|
23.9
|
1.0
|
|
H
|
D:GLY16
|
3.4
|
24.3
|
1.0
|
|
HD2
|
D:PRO184
|
3.6
|
27.4
|
1.0
|
|
N
|
D:CYS15
|
3.6
|
19.8
|
1.0
|
|
CB
|
D:CYS15
|
3.7
|
19.5
|
1.0
|
|
S1
|
D:SF4301
|
3.9
|
23.6
|
1.0
|
|
N
|
D:GLY16
|
3.9
|
20.3
|
1.0
|
|
H
|
D:VAL13
|
4.0
|
24.3
|
1.0
|
|
HG23
|
D:VAL13
|
4.0
|
24.3
|
1.0
|
|
HG22
|
D:VAL13
|
4.0
|
24.3
|
1.0
|
|
HB3
|
D:CYS15
|
4.0
|
23.4
|
1.0
|
|
H
|
D:CYS18
|
4.0
|
24.0
|
1.0
|
|
H
|
D:GLY14
|
4.0
|
24.2
|
1.0
|
|
N
|
D:GLY17
|
4.1
|
20.0
|
1.0
|
|
CA
|
D:CYS15
|
4.1
|
19.7
|
1.0
|
|
C
|
D:CYS15
|
4.4
|
21.0
|
1.0
|
|
CD
|
D:PRO184
|
4.4
|
22.8
|
1.0
|
|
HA3
|
D:GLY17
|
4.4
|
25.9
|
1.0
|
|
N
|
D:GLY14
|
4.4
|
20.2
|
1.0
|
|
CG2
|
D:VAL13
|
4.4
|
20.2
|
1.0
|
|
HA
|
D:CYS183
|
4.5
|
26.4
|
1.0
|
|
HB2
|
D:CYS15
|
4.5
|
23.4
|
1.0
|
|
HD3
|
D:PRO184
|
4.5
|
27.4
|
1.0
|
|
C
|
D:GLY14
|
4.7
|
20.9
|
1.0
|
|
SG
|
D:CYS18
|
4.7
|
22.7
|
1.0
|
|
N
|
D:VAL13
|
4.7
|
20.3
|
1.0
|
|
SG
|
D:CYS12
|
4.7
|
21.0
|
1.0
|
|
O
|
C:HOH1301
|
4.8
|
19.1
|
1.0
|
|
HA2
|
D:GLY14
|
4.8
|
24.8
|
1.0
|
|
CA
|
D:GLY17
|
4.8
|
21.6
|
1.0
|
|
N
|
D:CYS18
|
4.8
|
20.0
|
1.0
|
|
SG
|
D:CYS183
|
4.8
|
22.4
|
1.0
|
|
HA
|
D:CYS12
|
4.8
|
26.4
|
1.0
|
|
HG3
|
D:PRO184
|
4.9
|
26.2
|
1.0
|
|
HG2
|
D:PRO184
|
4.9
|
26.2
|
1.0
|
|
CA
|
D:GLY16
|
4.9
|
19.8
|
1.0
|
|
CA
|
D:GLY14
|
4.9
|
20.7
|
1.0
|
|
C
|
D:GLY16
|
4.9
|
20.2
|
1.0
|
|
CG
|
D:PRO184
|
5.0
|
21.8
|
1.0
|
|
HA2
|
D:GLY16
|
5.0
|
23.7
|
1.0
|
|
Iron binding site 6 out
of 40 in 6cz8
Go back to
Iron Binding Sites List in 6cz8
Iron binding site 6 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe301
b:21.6
occ:1.00
|
FE2
|
D:SF4301
|
0.0
|
21.6
|
1.0
|
|
S3
|
D:SF4301
|
2.3
|
22.4
|
1.0
|
|
S1
|
D:SF4301
|
2.3
|
23.6
|
1.0
|
|
SG
|
D:CYS12
|
2.3
|
21.0
|
1.0
|
|
S4
|
D:SF4301
|
2.3
|
21.7
|
1.0
|
|
FE3
|
D:SF4301
|
2.7
|
23.0
|
1.0
|
|
FE4
|
D:SF4301
|
2.7
|
23.4
|
1.0
|
|
FE1
|
D:SF4301
|
2.8
|
21.1
|
1.0
|
|
HA
|
D:CYS12
|
3.2
|
26.4
|
1.0
|
|
H
|
D:GLY14
|
3.2
|
24.2
|
1.0
|
|
CB
|
D:CYS12
|
3.3
|
21.3
|
1.0
|
|
H
|
D:VAL13
|
3.4
|
24.3
|
1.0
|
|
HB2
|
D:CYS12
|
3.4
|
25.5
|
1.0
|
|
HG3
|
D:PRO54
|
3.5
|
27.7
|
1.0
|
|
CA
|
D:CYS12
|
3.7
|
22.0
|
1.0
|
|
S2
|
D:SF4301
|
3.9
|
21.8
|
1.0
|
|
HG2
|
D:PRO54
|
3.9
|
27.7
|
1.0
|
|
N
|
D:VAL13
|
3.9
|
20.3
|
1.0
|
|
H
|
D:CYS15
|
4.0
|
23.7
|
1.0
|
|
N
|
D:GLY14
|
4.0
|
20.2
|
1.0
|
|
HA2
|
D:GLY14
|
4.1
|
24.8
|
1.0
|
|
CG
|
D:PRO54
|
4.1
|
23.1
|
1.0
|
|
HB3
|
D:CYS12
|
4.2
|
25.5
|
1.0
|
|
HE1
|
D:TYR52
|
4.2
|
24.2
|
1.0
|
|
C
|
D:CYS12
|
4.2
|
20.8
|
1.0
|
|
HB3
|
D:ALA187
|
4.5
|
29.5
|
1.0
|
|
CA
|
D:GLY14
|
4.5
|
20.7
|
1.0
|
|
H
|
D:GLY16
|
4.7
|
24.3
|
1.0
|
|
N
|
D:CYS15
|
4.7
|
19.8
|
1.0
|
|
SG
|
D:CYS183
|
4.7
|
22.4
|
1.0
|
|
CE1
|
D:TYR52
|
4.8
|
20.1
|
1.0
|
|
HH11
|
D:ARG188
|
4.8
|
26.1
|
1.0
|
|
HB3
|
D:PRO54
|
4.8
|
24.7
|
1.0
|
|
HG22
|
D:VAL13
|
4.9
|
24.3
|
1.0
|
|
HD1
|
D:TYR52
|
4.9
|
23.5
|
1.0
|
|
SG
|
D:CYS18
|
4.9
|
22.7
|
1.0
|
|
C
|
D:VAL13
|
4.9
|
20.1
|
1.0
|
|
N
|
D:CYS12
|
5.0
|
21.3
|
1.0
|
|
Iron binding site 7 out
of 40 in 6cz8
Go back to
Iron Binding Sites List in 6cz8
Iron binding site 7 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe301
b:23.0
occ:1.00
|
FE3
|
D:SF4301
|
0.0
|
23.0
|
1.0
|
|
S2
|
D:SF4301
|
2.3
|
21.8
|
1.0
|
|
S4
|
D:SF4301
|
2.3
|
21.7
|
1.0
|
|
S1
|
D:SF4301
|
2.3
|
23.6
|
1.0
|
|
SG
|
D:CYS183
|
2.3
|
22.4
|
1.0
|
|
FE2
|
D:SF4301
|
2.7
|
21.6
|
1.0
|
|
FE4
|
D:SF4301
|
2.7
|
23.4
|
1.0
|
|
FE1
|
D:SF4301
|
2.7
|
21.1
|
1.0
|
|
HB2
|
D:CYS183
|
3.1
|
26.7
|
1.0
|
|
HD2
|
D:PRO184
|
3.2
|
27.4
|
1.0
|
|
CB
|
D:CYS183
|
3.3
|
22.2
|
1.0
|
|
HA
|
D:CYS183
|
3.3
|
26.4
|
1.0
|
|
HB3
|
D:ALA187
|
3.6
|
29.5
|
1.0
|
|
CA
|
D:CYS183
|
3.8
|
22.0
|
1.0
|
|
HD2
|
D:ARG188
|
3.8
|
34.4
|
1.0
|
|
S3
|
D:SF4301
|
3.9
|
22.4
|
1.0
|
|
HB3
|
D:CYS183
|
4.1
|
26.7
|
1.0
|
|
CD
|
D:PRO184
|
4.1
|
22.8
|
1.0
|
|
HA
|
D:CYS12
|
4.1
|
26.4
|
1.0
|
|
HG3
|
D:ARG188
|
4.2
|
31.1
|
1.0
|
|
HB3
|
D:CYS18
|
4.4
|
25.0
|
1.0
|
|
H
|
D:ALA187
|
4.5
|
29.3
|
1.0
|
|
CB
|
D:ALA187
|
4.5
|
24.6
|
1.0
|
|
CD
|
D:ARG188
|
4.5
|
28.7
|
1.0
|
|
C
|
D:CYS183
|
4.6
|
22.5
|
1.0
|
|
HB2
|
D:ALA187
|
4.6
|
29.5
|
1.0
|
|
HD3
|
D:PRO184
|
4.6
|
27.4
|
1.0
|
|
H
|
D:SER185
|
4.6
|
28.2
|
1.0
|
|
H
|
D:VAL13
|
4.6
|
24.3
|
1.0
|
|
HD3
|
D:ARG188
|
4.6
|
34.4
|
1.0
|
|
N
|
D:PRO184
|
4.6
|
22.2
|
1.0
|
|
HH11
|
D:ARG188
|
4.7
|
26.1
|
1.0
|
|
H
|
D:CYS18
|
4.7
|
24.0
|
1.0
|
|
OG
|
D:SER185
|
4.7
|
23.4
|
1.0
|
|
HG
|
D:SER185
|
4.8
|
28.1
|
1.0
|
|
SG
|
D:CYS12
|
4.8
|
21.0
|
1.0
|
|
HG2
|
D:PRO184
|
4.8
|
26.2
|
1.0
|
|
CG
|
D:ARG188
|
4.9
|
25.9
|
1.0
|
|
SG
|
D:CYS15
|
4.9
|
20.2
|
1.0
|
|
SG
|
D:CYS18
|
4.9
|
22.7
|
1.0
|
|
N
|
D:CYS183
|
4.9
|
21.8
|
1.0
|
|
HB2
|
D:CYS12
|
5.0
|
25.5
|
1.0
|
|
Iron binding site 8 out
of 40 in 6cz8
Go back to
Iron Binding Sites List in 6cz8
Iron binding site 8 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe301
b:23.4
occ:1.00
|
FE4
|
D:SF4301
|
0.0
|
23.4
|
1.0
|
|
S1
|
D:SF4301
|
2.3
|
23.6
|
1.0
|
|
S2
|
D:SF4301
|
2.3
|
21.8
|
1.0
|
|
S3
|
D:SF4301
|
2.3
|
22.4
|
1.0
|
|
SG
|
D:CYS18
|
2.4
|
22.7
|
1.0
|
|
FE3
|
D:SF4301
|
2.7
|
23.0
|
1.0
|
|
FE2
|
D:SF4301
|
2.7
|
21.6
|
1.0
|
|
FE1
|
D:SF4301
|
2.7
|
21.1
|
1.0
|
|
H
|
D:CYS18
|
3.0
|
24.0
|
1.0
|
|
HB3
|
D:CYS18
|
3.1
|
25.0
|
1.0
|
|
CB
|
D:CYS18
|
3.3
|
20.9
|
1.0
|
|
HH11
|
D:ARG188
|
3.5
|
26.1
|
1.0
|
|
HD2
|
D:ARG188
|
3.6
|
34.4
|
1.0
|
|
N
|
D:CYS18
|
3.8
|
20.0
|
1.0
|
|
S4
|
D:SF4301
|
3.9
|
21.7
|
1.0
|
|
H
|
D:GLY16
|
4.0
|
24.3
|
1.0
|
|
HB2
|
D:CYS18
|
4.0
|
25.0
|
1.0
|
|
NH1
|
D:ARG188
|
4.1
|
21.7
|
1.0
|
|
HB3
|
D:PRO54
|
4.1
|
24.7
|
1.0
|
|
HG3
|
D:PRO54
|
4.1
|
27.7
|
1.0
|
|
H
|
D:GLY17
|
4.2
|
23.9
|
1.0
|
|
CA
|
D:CYS18
|
4.2
|
20.6
|
1.0
|
|
HH12
|
D:ARG188
|
4.3
|
26.1
|
1.0
|
|
O
|
D:HOH413
|
4.4
|
27.5
|
1.0
|
|
HG2
|
D:PRO54
|
4.5
|
27.7
|
1.0
|
|
N
|
D:GLY17
|
4.5
|
20.0
|
1.0
|
|
HH
|
D:TYR52
|
4.5
|
32.9
|
1.0
|
|
HB2
|
D:CYS183
|
4.6
|
26.7
|
1.0
|
|
HE1
|
D:TYR52
|
4.6
|
24.2
|
1.0
|
|
HA2
|
D:GLY16
|
4.6
|
23.7
|
1.0
|
|
CD
|
D:ARG188
|
4.6
|
28.7
|
1.0
|
|
CG
|
D:PRO54
|
4.6
|
23.1
|
1.0
|
|
N
|
D:GLY16
|
4.7
|
20.3
|
1.0
|
|
H
|
D:CYS15
|
4.7
|
23.7
|
1.0
|
|
CB
|
D:PRO54
|
4.8
|
20.6
|
1.0
|
|
SG
|
D:CYS12
|
4.8
|
21.0
|
1.0
|
|
SG
|
D:CYS15
|
4.8
|
20.2
|
1.0
|
|
HA
|
D:CYS18
|
4.8
|
24.7
|
1.0
|
|
H
|
D:SER19
|
4.8
|
24.4
|
1.0
|
|
HA
|
D:CYS183
|
4.8
|
26.4
|
1.0
|
|
SG
|
D:CYS183
|
4.9
|
22.4
|
1.0
|
|
C
|
D:GLY16
|
4.9
|
20.2
|
1.0
|
|
C
|
D:GLY17
|
4.9
|
19.9
|
1.0
|
|
CA
|
D:GLY16
|
4.9
|
19.8
|
1.0
|
|
HD3
|
D:ARG188
|
5.0
|
34.4
|
1.0
|
|
CZ
|
D:ARG188
|
5.0
|
24.6
|
1.0
|
|
Iron binding site 9 out
of 40 in 6cz8
Go back to
Iron Binding Sites List in 6cz8
Iron binding site 9 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe302
b:20.0
occ:1.00
|
FE1
|
D:SF4302
|
0.0
|
20.0
|
1.0
|
|
S3
|
D:SF4302
|
2.3
|
19.9
|
1.0
|
|
S2
|
D:SF4302
|
2.3
|
19.7
|
1.0
|
|
S4
|
D:SF4302
|
2.3
|
20.1
|
1.0
|
|
SG
|
D:CYS167
|
2.3
|
21.4
|
1.0
|
|
FE3
|
D:SF4302
|
2.7
|
20.4
|
1.0
|
|
FE4
|
D:SF4302
|
2.7
|
20.7
|
1.0
|
|
FE2
|
D:SF4302
|
2.7
|
20.8
|
1.0
|
|
H
|
D:CYS167
|
3.1
|
26.6
|
1.0
|
|
HB3
|
D:PRO177
|
3.4
|
32.1
|
1.0
|
|
N
|
D:CYS167
|
3.4
|
22.2
|
1.0
|
|
CB
|
D:CYS167
|
3.4
|
21.0
|
1.0
|
|
HB2
|
D:CYS167
|
3.4
|
25.2
|
1.0
|
|
HD21
|
D:ASN26
|
3.4
|
25.3
|
1.0
|
|
CA
|
D:CYS167
|
3.8
|
21.3
|
1.0
|
|
S1
|
D:SF4302
|
3.9
|
21.0
|
1.0
|
|
HA
|
D:CYS167
|
3.9
|
25.5
|
1.0
|
|
H
|
D:ALA178
|
3.9
|
29.3
|
1.0
|
|
HA
|
D:PHE166
|
4.0
|
25.6
|
1.0
|
|
C
|
D:PHE166
|
4.0
|
22.1
|
1.0
|
|
ND2
|
D:ASN26
|
4.2
|
21.1
|
1.0
|
|
H
|
D:CYS179
|
4.2
|
25.2
|
1.0
|
|
HB3
|
D:CYS167
|
4.3
|
25.2
|
1.0
|
|
CB
|
D:PRO177
|
4.3
|
26.7
|
1.0
|
|
H
|
D:PHE166
|
4.3
|
25.4
|
1.0
|
|
CA
|
D:PHE166
|
4.4
|
21.3
|
1.0
|
|
HA
|
D:PRO177
|
4.4
|
30.8
|
1.0
|
|
HB3
|
D:ALA178
|
4.4
|
24.5
|
1.0
|
|
HD22
|
D:ASN26
|
4.4
|
25.3
|
1.0
|
|
SG
|
D:CYS179
|
4.5
|
21.0
|
1.0
|
|
N
|
D:ALA178
|
4.5
|
24.4
|
1.0
|
|
N
|
D:PHE166
|
4.6
|
21.2
|
1.0
|
|
HB2
|
D:PRO177
|
4.6
|
32.1
|
1.0
|
|
O
|
D:PHE166
|
4.7
|
23.1
|
1.0
|
|
HG2
|
D:GLU25
|
4.7
|
25.7
|
1.0
|
|
CA
|
D:PRO177
|
4.8
|
25.7
|
1.0
|
|
H
|
D:THR165
|
4.8
|
25.1
|
1.0
|
|
SG
|
D:CYS22
|
4.8
|
20.3
|
1.0
|
|
SG
|
D:CYS164
|
4.8
|
21.0
|
1.0
|
|
HE3
|
D:TRP34
|
4.9
|
25.9
|
1.0
|
|
Iron binding site 10 out
of 40 in 6cz8
Go back to
Iron Binding Sites List in 6cz8
Iron binding site 10 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Arsenate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe302
b:20.8
occ:1.00
|
FE2
|
D:SF4302
|
0.0
|
20.8
|
1.0
|
|
S4
|
D:SF4302
|
2.2
|
20.1
|
1.0
|
|
S1
|
D:SF4302
|
2.3
|
21.0
|
1.0
|
|
S3
|
D:SF4302
|
2.3
|
19.9
|
1.0
|
|
SG
|
D:CYS22
|
2.4
|
20.3
|
1.0
|
|
FE3
|
D:SF4302
|
2.7
|
20.4
|
1.0
|
|
FE4
|
D:SF4302
|
2.7
|
20.7
|
1.0
|
|
FE1
|
D:SF4302
|
2.7
|
20.0
|
1.0
|
|
HB2
|
D:CYS22
|
3.0
|
24.8
|
1.0
|
|
CB
|
D:CYS22
|
3.3
|
20.7
|
1.0
|
|
HD21
|
D:ASN26
|
3.4
|
25.3
|
1.0
|
|
HD22
|
D:ASN26
|
3.4
|
25.3
|
1.0
|
|
HB2
|
D:SER35
|
3.7
|
25.5
|
1.0
|
|
HE3
|
D:TRP34
|
3.7
|
25.9
|
1.0
|
|
ND2
|
D:ASN26
|
3.7
|
21.1
|
1.0
|
|
HA
|
D:CYS22
|
3.7
|
24.4
|
1.0
|
|
HB2
|
D:TRP34
|
3.9
|
25.9
|
1.0
|
|
S2
|
D:SF4302
|
3.9
|
19.7
|
1.0
|
|
HB3
|
D:CYS22
|
4.1
|
24.8
|
1.0
|
|
CA
|
D:CYS22
|
4.1
|
20.3
|
1.0
|
|
HB2
|
D:CYS164
|
4.3
|
24.8
|
1.0
|
|
H
|
D:SER35
|
4.3
|
25.4
|
1.0
|
|
HB3
|
D:TRP34
|
4.4
|
25.9
|
1.0
|
|
HA
|
D:CYS164
|
4.4
|
24.9
|
1.0
|
|
HB3
|
D:SER35
|
4.4
|
25.5
|
1.0
|
|
HB3
|
D:CYS179
|
4.4
|
24.6
|
1.0
|
|
CB
|
D:SER35
|
4.5
|
21.3
|
1.0
|
|
CE3
|
D:TRP34
|
4.6
|
21.6
|
1.0
|
|
CB
|
D:TRP34
|
4.6
|
21.5
|
1.0
|
|
SG
|
D:CYS167
|
4.6
|
21.4
|
1.0
|
|
N
|
D:SER35
|
4.7
|
21.1
|
1.0
|
|
SG
|
D:CYS164
|
4.7
|
21.0
|
1.0
|
|
CB
|
D:CYS164
|
4.9
|
20.7
|
1.0
|
|
SG
|
D:CYS179
|
4.9
|
21.0
|
1.0
|
|
H
|
D:CYS179
|
4.9
|
25.2
|
1.0
|
|
CG
|
D:ASN26
|
5.0
|
20.9
|
1.0
|
|
Reference:
N.R.Glasser,
P.H.Oyala,
T.H.Osborne,
J.M.Santini,
D.K.Newman.
Structural and Mechanistic Analysis of the Arsenate Respiratory Reductase Provides Insight Into Environmental Arsenic Transformations. Proc. Natl. Acad. Sci. V. 115 E8614 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30104376
DOI: 10.1073/PNAS.1807984115
Page generated: Tue Aug 6 16:04:56 2024
|
