Iron in PDB 6cza: The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate
Protein crystallography data
The structure of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate, PDB code: 6cza
was solved by
N.R.Glasser,
D.K.Newman,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
37.70 /
1.71
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
232.397,
86.366,
147.429,
90.00,
127.61,
90.00
|
|
R / Rfree (%)
|
13.2 /
15.4
|
Other elements in 6cza:
The structure of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Binding sites:
The binding sites of Iron atom in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate
(pdb code 6cza). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 40 binding sites of Iron where determined in the
The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate, PDB code: 6cza:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 40 in 6cza
Go back to
Iron Binding Sites List in 6cza
Iron binding site 1 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe901
b:15.9
occ:1.00
|
FE1
|
A:SF4901
|
0.0
|
15.9
|
1.0
|
|
S2
|
A:SF4901
|
2.3
|
15.9
|
1.0
|
|
S3
|
A:SF4901
|
2.3
|
16.0
|
1.0
|
|
S4
|
A:SF4901
|
2.3
|
15.9
|
1.0
|
|
SG
|
A:CYS64
|
2.4
|
16.7
|
1.0
|
|
FE3
|
A:SF4901
|
2.7
|
15.9
|
1.0
|
|
FE2
|
A:SF4901
|
2.7
|
16.3
|
1.0
|
|
FE4
|
A:SF4901
|
2.8
|
15.8
|
1.0
|
|
H
|
A:CYS64
|
2.8
|
19.1
|
1.0
|
|
HB2
|
A:SER66
|
3.0
|
20.8
|
1.0
|
|
N
|
A:CYS64
|
3.2
|
15.9
|
1.0
|
|
HH22
|
A:ARG98
|
3.3
|
20.9
|
1.0
|
|
CB
|
A:CYS64
|
3.5
|
15.8
|
1.0
|
|
NH2
|
A:ARG98
|
3.6
|
17.4
|
1.0
|
|
CA
|
A:CYS64
|
3.8
|
14.8
|
1.0
|
|
HB3
|
A:CYS64
|
3.8
|
18.9
|
1.0
|
|
HH12
|
A:ARG98
|
3.8
|
21.4
|
1.0
|
|
C
|
A:GLY63
|
3.8
|
16.1
|
1.0
|
|
HG
|
A:SER66
|
3.9
|
19.3
|
1.0
|
|
S1
|
A:SF4901
|
3.9
|
16.8
|
1.0
|
|
HA3
|
A:GLY63
|
3.9
|
19.6
|
1.0
|
|
CB
|
A:SER66
|
3.9
|
17.3
|
1.0
|
|
HH21
|
A:ARG98
|
4.0
|
20.9
|
1.0
|
|
O
|
A:CYS64
|
4.0
|
17.8
|
1.0
|
|
CZ
|
A:ARG98
|
4.0
|
17.0
|
1.0
|
|
NH1
|
A:ARG98
|
4.1
|
17.8
|
1.0
|
|
H
|
A:SER66
|
4.1
|
18.5
|
1.0
|
|
C
|
A:CYS64
|
4.2
|
16.6
|
1.0
|
|
OG
|
A:SER66
|
4.2
|
16.1
|
1.0
|
|
H
|
A:GLY63
|
4.2
|
18.6
|
1.0
|
|
CA
|
A:GLY63
|
4.2
|
16.4
|
1.0
|
|
H
|
A:TRP67
|
4.3
|
19.5
|
1.0
|
|
HB2
|
A:CYS64
|
4.3
|
18.9
|
1.0
|
|
N
|
A:GLY63
|
4.4
|
15.5
|
1.0
|
|
HB3
|
A:SER66
|
4.4
|
20.8
|
1.0
|
|
O
|
A:GLY63
|
4.6
|
17.0
|
1.0
|
|
H
|
A:CYS68
|
4.6
|
18.0
|
1.0
|
|
SG
|
A:CYS96
|
4.6
|
15.2
|
1.0
|
|
HH11
|
A:ARG98
|
4.6
|
21.4
|
1.0
|
|
HB
|
A:VAL235
|
4.7
|
17.2
|
1.0
|
|
HA
|
A:CYS64
|
4.7
|
17.8
|
1.0
|
|
N
|
A:SER66
|
4.7
|
15.4
|
1.0
|
|
HG23
|
A:VAL235
|
4.8
|
17.5
|
1.0
|
|
SG
|
A:CYS68
|
4.8
|
16.1
|
1.0
|
|
SG
|
A:CYS61
|
4.8
|
16.7
|
1.0
|
|
N
|
A:TRP67
|
4.8
|
16.2
|
1.0
|
|
CA
|
A:SER66
|
4.8
|
14.2
|
1.0
|
|
NE
|
A:ARG98
|
4.9
|
15.7
|
1.0
|
|
HB3
|
A:CYS61
|
5.0
|
20.2
|
1.0
|
|
HB2
|
A:ARG98
|
5.0
|
18.8
|
1.0
|
|
HG21
|
A:VAL235
|
5.0
|
17.5
|
1.0
|
|
Iron binding site 2 out
of 40 in 6cza
Go back to
Iron Binding Sites List in 6cza
Iron binding site 2 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe901
b:16.3
occ:1.00
|
FE2
|
A:SF4901
|
0.0
|
16.3
|
1.0
|
|
S1
|
A:SF4901
|
2.3
|
16.8
|
1.0
|
|
S4
|
A:SF4901
|
2.3
|
15.9
|
1.0
|
|
S3
|
A:SF4901
|
2.3
|
16.0
|
1.0
|
|
SG
|
A:CYS96
|
2.3
|
15.2
|
1.0
|
|
FE3
|
A:SF4901
|
2.7
|
15.9
|
1.0
|
|
FE1
|
A:SF4901
|
2.7
|
15.9
|
1.0
|
|
FE4
|
A:SF4901
|
2.8
|
15.8
|
1.0
|
|
HB3
|
A:CYS96
|
3.2
|
15.8
|
1.0
|
|
CB
|
A:CYS96
|
3.4
|
13.2
|
1.0
|
|
HB2
|
A:ARG98
|
3.5
|
18.8
|
1.0
|
|
HH21
|
A:ARG98
|
3.5
|
20.9
|
1.0
|
|
H
|
A:CYS96
|
3.6
|
17.9
|
1.0
|
|
NH2
|
A:ARG98
|
3.7
|
17.4
|
1.0
|
|
S2
|
A:SF4901
|
3.9
|
15.9
|
1.0
|
|
HH22
|
A:ARG98
|
3.9
|
20.9
|
1.0
|
|
CZ
|
A:ARG98
|
4.1
|
17.0
|
1.0
|
|
HB
|
A:VAL235
|
4.1
|
17.2
|
1.0
|
|
HE
|
A:ARG98
|
4.1
|
18.9
|
1.0
|
|
HB2
|
A:CYS96
|
4.1
|
15.8
|
1.0
|
|
H
|
A:ARG98
|
4.2
|
17.4
|
1.0
|
|
NE
|
A:ARG98
|
4.2
|
15.7
|
1.0
|
|
N
|
A:CYS96
|
4.2
|
14.9
|
1.0
|
|
CA
|
A:CYS96
|
4.3
|
13.1
|
1.0
|
|
HG
|
A:SER236
|
4.3
|
19.6
|
1.0
|
|
H
|
A:GLN99
|
4.4
|
18.0
|
1.0
|
|
CB
|
A:ARG98
|
4.4
|
15.7
|
1.0
|
|
OG
|
A:SER236
|
4.4
|
16.4
|
1.0
|
|
HZ3
|
A:LYS70
|
4.5
|
18.4
|
1.0
|
|
HG
|
A:SER95
|
4.5
|
17.6
|
1.0
|
|
C
|
A:CYS96
|
4.5
|
14.8
|
1.0
|
|
SG
|
A:CYS64
|
4.6
|
16.7
|
1.0
|
|
O
|
A:CYS96
|
4.6
|
15.1
|
1.0
|
|
HB3
|
A:GLN99
|
4.7
|
17.9
|
1.0
|
|
N
|
A:GLN99
|
4.7
|
15.0
|
1.0
|
|
NH1
|
A:ARG98
|
4.8
|
17.8
|
1.0
|
|
N
|
A:ARG98
|
4.8
|
14.5
|
1.0
|
|
SG
|
A:CYS68
|
4.8
|
16.1
|
1.0
|
|
HB3
|
A:ARG98
|
4.8
|
18.8
|
1.0
|
|
OG
|
A:SER95
|
4.8
|
14.6
|
1.0
|
|
HB2
|
A:SER66
|
4.9
|
20.8
|
1.0
|
|
SG
|
A:CYS61
|
4.9
|
16.7
|
1.0
|
|
HA3
|
A:GLY63
|
4.9
|
19.6
|
1.0
|
|
HH12
|
A:ARG98
|
5.0
|
21.4
|
1.0
|
|
CA
|
A:ARG98
|
5.0
|
14.4
|
1.0
|
|
Iron binding site 3 out
of 40 in 6cza
Go back to
Iron Binding Sites List in 6cza
Iron binding site 3 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe901
b:15.9
occ:1.00
|
FE3
|
A:SF4901
|
0.0
|
15.9
|
1.0
|
|
S4
|
A:SF4901
|
2.2
|
15.9
|
1.0
|
|
S1
|
A:SF4901
|
2.3
|
16.8
|
1.0
|
|
S2
|
A:SF4901
|
2.3
|
15.9
|
1.0
|
|
SG
|
A:CYS68
|
2.4
|
16.1
|
1.0
|
|
FE2
|
A:SF4901
|
2.7
|
16.3
|
1.0
|
|
FE1
|
A:SF4901
|
2.7
|
15.9
|
1.0
|
|
FE4
|
A:SF4901
|
2.7
|
15.8
|
1.0
|
|
HB2
|
A:CYS68
|
2.9
|
17.3
|
1.0
|
|
HG
|
A:SER236
|
3.1
|
19.6
|
1.0
|
|
HB2
|
A:SER66
|
3.2
|
20.8
|
1.0
|
|
H
|
A:CYS68
|
3.2
|
18.0
|
1.0
|
|
CB
|
A:CYS68
|
3.2
|
14.4
|
1.0
|
|
OG
|
A:SER236
|
3.7
|
16.4
|
1.0
|
|
S3
|
A:SF4901
|
3.8
|
16.0
|
1.0
|
|
HB3
|
A:SER66
|
3.8
|
20.8
|
1.0
|
|
HB3
|
A:CYS61
|
3.9
|
20.2
|
1.0
|
|
HB3
|
A:CYS68
|
3.9
|
17.3
|
1.0
|
|
CB
|
A:SER66
|
3.9
|
17.3
|
1.0
|
|
N
|
A:CYS68
|
3.9
|
15.0
|
1.0
|
|
HE2
|
A:LYS70
|
4.0
|
17.4
|
1.0
|
|
HZ3
|
A:LYS70
|
4.2
|
18.4
|
1.0
|
|
CA
|
A:CYS68
|
4.2
|
14.1
|
1.0
|
|
H
|
A:CYS96
|
4.5
|
17.9
|
1.0
|
|
H
|
A:SER236
|
4.5
|
17.7
|
1.0
|
|
SG
|
A:CYS64
|
4.6
|
16.7
|
1.0
|
|
H
|
A:TRP67
|
4.7
|
19.5
|
1.0
|
|
OG
|
A:SER66
|
4.7
|
16.1
|
1.0
|
|
SG
|
A:CYS61
|
4.7
|
16.7
|
1.0
|
|
CB
|
A:CYS61
|
4.7
|
16.8
|
1.0
|
|
HE22
|
A:GLN234
|
4.7
|
20.1
|
1.0
|
|
HB3
|
A:CYS96
|
4.7
|
15.8
|
1.0
|
|
NZ
|
A:LYS70
|
4.7
|
15.3
|
1.0
|
|
HZ2
|
A:LYS70
|
4.7
|
18.4
|
1.0
|
|
O
|
A:HOH1207
|
4.7
|
16.7
|
1.0
|
|
HA
|
A:CYS68
|
4.7
|
16.9
|
1.0
|
|
CE
|
A:LYS70
|
4.7
|
14.5
|
1.0
|
|
N
|
A:TRP67
|
4.8
|
16.2
|
1.0
|
|
HB2
|
A:SER236
|
4.8
|
18.2
|
1.0
|
|
HG
|
A:SER66
|
4.8
|
19.3
|
1.0
|
|
CB
|
A:SER236
|
4.9
|
15.2
|
1.0
|
|
SG
|
A:CYS96
|
4.9
|
15.2
|
1.0
|
|
HB
|
A:VAL235
|
4.9
|
17.2
|
1.0
|
|
H
|
A:CYS64
|
4.9
|
19.1
|
1.0
|
|
C
|
A:SER66
|
5.0
|
16.3
|
1.0
|
|
Iron binding site 4 out
of 40 in 6cza
Go back to
Iron Binding Sites List in 6cza
Iron binding site 4 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe901
b:15.8
occ:1.00
|
FE4
|
A:SF4901
|
0.0
|
15.8
|
1.0
|
|
S3
|
A:SF4901
|
2.3
|
16.0
|
1.0
|
|
S2
|
A:SF4901
|
2.3
|
15.9
|
1.0
|
|
SG
|
A:CYS61
|
2.3
|
16.7
|
1.0
|
|
S1
|
A:SF4901
|
2.3
|
16.8
|
1.0
|
|
FE3
|
A:SF4901
|
2.7
|
15.9
|
1.0
|
|
FE2
|
A:SF4901
|
2.8
|
16.3
|
1.0
|
|
FE1
|
A:SF4901
|
2.8
|
15.9
|
1.0
|
|
HB3
|
A:CYS61
|
2.9
|
20.2
|
1.0
|
|
H
|
A:GLY63
|
3.2
|
18.6
|
1.0
|
|
CB
|
A:CYS61
|
3.2
|
16.8
|
1.0
|
|
HA3
|
A:GLY63
|
3.6
|
19.6
|
1.0
|
|
HB2
|
A:CYS61
|
3.7
|
20.2
|
1.0
|
|
N
|
A:GLY63
|
3.9
|
15.5
|
1.0
|
|
HE3
|
A:LYS729
|
3.9
|
21.3
|
1.0
|
|
S4
|
A:SF4901
|
3.9
|
15.9
|
1.0
|
|
HE2
|
A:LYS70
|
3.9
|
17.4
|
1.0
|
|
H
|
A:CYS64
|
4.0
|
19.1
|
1.0
|
|
HB2
|
A:CYS68
|
4.1
|
17.3
|
1.0
|
|
CA
|
A:GLY63
|
4.2
|
16.4
|
1.0
|
|
H
|
A:CYS68
|
4.3
|
18.0
|
1.0
|
|
HE3
|
A:LYS70
|
4.4
|
17.4
|
1.0
|
|
HA
|
A:GLN99
|
4.4
|
17.5
|
1.0
|
|
CA
|
A:CYS61
|
4.4
|
14.6
|
1.0
|
|
C
|
A:CYS61
|
4.4
|
16.0
|
1.0
|
|
HZ3
|
A:LYS70
|
4.5
|
18.4
|
1.0
|
|
HB2
|
A:ARG98
|
4.5
|
18.8
|
1.0
|
|
N
|
A:CYS64
|
4.5
|
15.9
|
1.0
|
|
CE
|
A:LYS70
|
4.6
|
14.5
|
1.0
|
|
N
|
A:GLN62
|
4.6
|
16.7
|
1.0
|
|
HB3
|
A:GLN99
|
4.7
|
17.9
|
1.0
|
|
C
|
A:GLY63
|
4.7
|
16.1
|
1.0
|
|
H
|
A:GLN62
|
4.7
|
20.1
|
1.0
|
|
CE
|
A:LYS729
|
4.8
|
17.7
|
1.0
|
|
SG
|
A:CYS68
|
4.8
|
16.1
|
1.0
|
|
O
|
A:CYS61
|
4.8
|
16.4
|
1.0
|
|
HA
|
A:CYS61
|
4.9
|
17.5
|
1.0
|
|
SG
|
A:CYS96
|
4.9
|
15.2
|
1.0
|
|
CB
|
A:CYS68
|
4.9
|
14.4
|
1.0
|
|
C
|
A:GLN62
|
4.9
|
16.0
|
1.0
|
|
HB2
|
A:SER66
|
5.0
|
20.8
|
1.0
|
|
HE2
|
A:LYS729
|
5.0
|
21.3
|
1.0
|
|
HA2
|
A:GLY63
|
5.0
|
19.6
|
1.0
|
|
Iron binding site 5 out
of 40 in 6cza
Go back to
Iron Binding Sites List in 6cza
Iron binding site 5 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe301
b:18.9
occ:1.00
|
FE1
|
B:SF4301
|
0.0
|
18.9
|
1.0
|
|
S4
|
B:SF4301
|
2.3
|
18.5
|
1.0
|
|
S3
|
B:SF4301
|
2.3
|
19.6
|
1.0
|
|
S2
|
B:SF4301
|
2.3
|
18.2
|
1.0
|
|
SG
|
B:CYS15
|
2.4
|
17.7
|
1.0
|
|
FE3
|
B:SF4301
|
2.7
|
19.6
|
1.0
|
|
FE4
|
B:SF4301
|
2.7
|
19.6
|
1.0
|
|
FE2
|
B:SF4301
|
2.8
|
19.1
|
1.0
|
|
H
|
B:CYS15
|
2.8
|
20.8
|
1.0
|
|
H
|
B:GLY17
|
3.4
|
20.1
|
1.0
|
|
H
|
B:GLY16
|
3.4
|
20.3
|
1.0
|
|
HD2
|
B:PRO184
|
3.5
|
21.1
|
1.0
|
|
N
|
B:CYS15
|
3.6
|
17.4
|
1.0
|
|
HG22
|
B:VAL13
|
3.7
|
22.7
|
1.0
|
|
CB
|
B:CYS15
|
3.8
|
18.4
|
1.0
|
|
H
|
B:VAL13
|
4.0
|
21.0
|
1.0
|
|
S1
|
B:SF4301
|
4.0
|
19.6
|
1.0
|
|
N
|
B:GLY16
|
4.0
|
16.9
|
1.0
|
|
H
|
B:GLY14
|
4.0
|
21.1
|
1.0
|
|
H
|
B:CYS18
|
4.0
|
20.2
|
1.0
|
|
HB3
|
B:CYS15
|
4.0
|
22.1
|
1.0
|
|
N
|
B:GLY17
|
4.1
|
16.7
|
1.0
|
|
CA
|
B:CYS15
|
4.1
|
17.8
|
1.0
|
|
HG23
|
B:VAL13
|
4.2
|
22.7
|
1.0
|
|
CD
|
B:PRO184
|
4.3
|
17.6
|
1.0
|
|
CG2
|
B:VAL13
|
4.4
|
18.9
|
1.0
|
|
HD3
|
B:PRO184
|
4.4
|
21.1
|
1.0
|
|
C
|
B:CYS15
|
4.4
|
17.1
|
1.0
|
|
N
|
B:GLY14
|
4.4
|
17.6
|
1.0
|
|
HA3
|
B:GLY17
|
4.5
|
20.2
|
1.0
|
|
HA
|
B:CYS183
|
4.5
|
21.0
|
1.0
|
|
HB2
|
B:CYS15
|
4.5
|
22.1
|
1.0
|
|
HG3
|
B:PRO184
|
4.7
|
21.9
|
1.0
|
|
HG2
|
B:PRO184
|
4.7
|
21.9
|
1.0
|
|
C
|
B:GLY14
|
4.7
|
17.3
|
1.0
|
|
SG
|
B:CYS18
|
4.7
|
19.3
|
1.0
|
|
N
|
B:VAL13
|
4.7
|
17.5
|
1.0
|
|
SG
|
B:CYS12
|
4.8
|
17.5
|
1.0
|
|
SG
|
B:CYS183
|
4.8
|
18.9
|
1.0
|
|
O
|
A:HOH1294
|
4.8
|
17.6
|
1.0
|
|
CG
|
B:PRO184
|
4.8
|
18.3
|
1.0
|
|
N
|
B:CYS18
|
4.8
|
16.9
|
1.0
|
|
HA2
|
B:GLY14
|
4.8
|
20.9
|
1.0
|
|
HA
|
B:CYS12
|
4.8
|
21.2
|
1.0
|
|
CA
|
B:GLY17
|
4.8
|
16.8
|
1.0
|
|
CA
|
B:GLY16
|
4.9
|
16.9
|
1.0
|
|
CA
|
B:GLY14
|
4.9
|
17.5
|
1.0
|
|
HG21
|
B:VAL13
|
4.9
|
22.7
|
1.0
|
|
C
|
B:GLY16
|
4.9
|
17.1
|
1.0
|
|
Iron binding site 6 out
of 40 in 6cza
Go back to
Iron Binding Sites List in 6cza
Iron binding site 6 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe301
b:19.1
occ:1.00
|
FE2
|
B:SF4301
|
0.0
|
19.1
|
1.0
|
|
S1
|
B:SF4301
|
2.3
|
19.6
|
1.0
|
|
S3
|
B:SF4301
|
2.3
|
19.6
|
1.0
|
|
S4
|
B:SF4301
|
2.3
|
18.5
|
1.0
|
|
SG
|
B:CYS12
|
2.4
|
17.5
|
1.0
|
|
FE3
|
B:SF4301
|
2.6
|
19.6
|
1.0
|
|
FE4
|
B:SF4301
|
2.7
|
19.6
|
1.0
|
|
FE1
|
B:SF4301
|
2.8
|
18.9
|
1.0
|
|
HA
|
B:CYS12
|
3.2
|
21.2
|
1.0
|
|
H
|
B:GLY14
|
3.2
|
21.1
|
1.0
|
|
CB
|
B:CYS12
|
3.4
|
18.1
|
1.0
|
|
HB2
|
B:CYS12
|
3.4
|
21.7
|
1.0
|
|
H
|
B:VAL13
|
3.4
|
21.0
|
1.0
|
|
HG3
|
B:PRO54
|
3.4
|
24.3
|
1.0
|
|
CA
|
B:CYS12
|
3.7
|
17.7
|
1.0
|
|
S2
|
B:SF4301
|
3.9
|
18.2
|
1.0
|
|
N
|
B:VAL13
|
4.0
|
17.5
|
1.0
|
|
N
|
B:GLY14
|
4.0
|
17.6
|
1.0
|
|
HG2
|
B:PRO54
|
4.0
|
24.3
|
1.0
|
|
H
|
B:CYS15
|
4.0
|
20.8
|
1.0
|
|
CG
|
B:PRO54
|
4.2
|
20.2
|
1.0
|
|
HA2
|
B:GLY14
|
4.2
|
20.9
|
1.0
|
|
HE1
|
B:TYR52
|
4.2
|
23.3
|
1.0
|
|
HB3
|
B:CYS12
|
4.2
|
21.7
|
1.0
|
|
C
|
B:CYS12
|
4.3
|
17.6
|
1.0
|
|
HB3
|
B:ALA187
|
4.4
|
22.3
|
1.0
|
|
HG22
|
B:VAL13
|
4.6
|
22.7
|
1.0
|
|
CA
|
B:GLY14
|
4.6
|
17.5
|
1.0
|
|
HD1
|
B:TYR52
|
4.7
|
21.1
|
1.0
|
|
H
|
B:GLY16
|
4.7
|
20.3
|
1.0
|
|
SG
|
B:CYS183
|
4.7
|
18.9
|
1.0
|
|
CE1
|
B:TYR52
|
4.7
|
19.4
|
1.0
|
|
HH11
|
B:ARG188
|
4.8
|
22.0
|
1.0
|
|
N
|
B:CYS15
|
4.8
|
17.4
|
1.0
|
|
HB3
|
B:PRO54
|
4.9
|
21.4
|
1.0
|
|
SG
|
B:CYS18
|
4.9
|
19.3
|
1.0
|
|
C
|
B:VAL13
|
5.0
|
18.1
|
1.0
|
|
HD2
|
B:ARG188
|
5.0
|
25.9
|
1.0
|
|
HB2
|
B:ALA187
|
5.0
|
22.3
|
1.0
|
|
HD3
|
B:PRO54
|
5.0
|
23.0
|
1.0
|
|
Iron binding site 7 out
of 40 in 6cza
Go back to
Iron Binding Sites List in 6cza
Iron binding site 7 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe301
b:19.6
occ:1.00
|
FE3
|
B:SF4301
|
0.0
|
19.6
|
1.0
|
|
S2
|
B:SF4301
|
2.2
|
18.2
|
1.0
|
|
S4
|
B:SF4301
|
2.3
|
18.5
|
1.0
|
|
S1
|
B:SF4301
|
2.3
|
19.6
|
1.0
|
|
SG
|
B:CYS183
|
2.4
|
18.9
|
1.0
|
|
FE2
|
B:SF4301
|
2.6
|
19.1
|
1.0
|
|
FE4
|
B:SF4301
|
2.7
|
19.6
|
1.0
|
|
FE1
|
B:SF4301
|
2.7
|
18.9
|
1.0
|
|
HD2
|
B:PRO184
|
3.1
|
21.1
|
1.0
|
|
HB2
|
B:CYS183
|
3.2
|
21.0
|
1.0
|
|
CB
|
B:CYS183
|
3.3
|
17.5
|
1.0
|
|
HA
|
B:CYS183
|
3.3
|
21.0
|
1.0
|
|
HB3
|
B:ALA187
|
3.7
|
22.3
|
1.0
|
|
HD2
|
B:ARG188
|
3.7
|
25.9
|
1.0
|
|
CA
|
B:CYS183
|
3.8
|
17.5
|
1.0
|
|
S3
|
B:SF4301
|
3.8
|
19.6
|
1.0
|
|
CD
|
B:PRO184
|
4.1
|
17.6
|
1.0
|
|
HB3
|
B:CYS183
|
4.2
|
21.0
|
1.0
|
|
HA
|
B:CYS12
|
4.2
|
21.2
|
1.0
|
|
HG3
|
B:ARG188
|
4.2
|
25.2
|
1.0
|
|
HB3
|
B:CYS18
|
4.3
|
22.0
|
1.0
|
|
HB2
|
B:ALA187
|
4.4
|
22.3
|
1.0
|
|
H
|
B:ALA187
|
4.5
|
20.3
|
1.0
|
|
CB
|
B:ALA187
|
4.5
|
18.6
|
1.0
|
|
H
|
B:SER185
|
4.5
|
21.5
|
1.0
|
|
HD3
|
B:PRO184
|
4.5
|
21.1
|
1.0
|
|
CD
|
B:ARG188
|
4.5
|
21.6
|
1.0
|
|
C
|
B:CYS183
|
4.6
|
18.0
|
1.0
|
|
N
|
B:PRO184
|
4.6
|
16.1
|
1.0
|
|
H
|
B:VAL13
|
4.6
|
21.0
|
1.0
|
|
OG
|
B:SER185
|
4.7
|
18.7
|
1.0
|
|
HD3
|
B:ARG188
|
4.7
|
25.9
|
1.0
|
|
HH11
|
B:ARG188
|
4.7
|
22.0
|
1.0
|
|
H
|
B:CYS18
|
4.7
|
20.2
|
1.0
|
|
HG
|
B:SER185
|
4.7
|
22.4
|
1.0
|
|
HG2
|
B:PRO184
|
4.7
|
21.9
|
1.0
|
|
SG
|
B:CYS12
|
4.8
|
17.5
|
1.0
|
|
CG
|
B:ARG188
|
4.9
|
21.0
|
1.0
|
|
SG
|
B:CYS15
|
4.9
|
17.7
|
1.0
|
|
SG
|
B:CYS18
|
4.9
|
19.3
|
1.0
|
|
CG
|
B:PRO184
|
5.0
|
18.3
|
1.0
|
|
HB2
|
B:CYS12
|
5.0
|
21.7
|
1.0
|
|
HG22
|
B:VAL13
|
5.0
|
22.7
|
1.0
|
|
N
|
B:CYS183
|
5.0
|
17.8
|
1.0
|
|
Iron binding site 8 out
of 40 in 6cza
Go back to
Iron Binding Sites List in 6cza
Iron binding site 8 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe301
b:19.6
occ:1.00
|
FE4
|
B:SF4301
|
0.0
|
19.6
|
1.0
|
|
S1
|
B:SF4301
|
2.3
|
19.6
|
1.0
|
|
S3
|
B:SF4301
|
2.3
|
19.6
|
1.0
|
|
S2
|
B:SF4301
|
2.3
|
18.2
|
1.0
|
|
SG
|
B:CYS18
|
2.4
|
19.3
|
1.0
|
|
FE3
|
B:SF4301
|
2.7
|
19.6
|
1.0
|
|
FE2
|
B:SF4301
|
2.7
|
19.1
|
1.0
|
|
FE1
|
B:SF4301
|
2.7
|
18.9
|
1.0
|
|
HB3
|
B:CYS18
|
3.0
|
22.0
|
1.0
|
|
H
|
B:CYS18
|
3.0
|
20.2
|
1.0
|
|
CB
|
B:CYS18
|
3.3
|
18.4
|
1.0
|
|
HH11
|
B:ARG188
|
3.5
|
22.0
|
1.0
|
|
HD2
|
B:ARG188
|
3.6
|
25.9
|
1.0
|
|
N
|
B:CYS18
|
3.8
|
16.9
|
1.0
|
|
S4
|
B:SF4301
|
3.9
|
18.5
|
1.0
|
|
HB2
|
B:CYS18
|
4.0
|
22.0
|
1.0
|
|
HG3
|
B:PRO54
|
4.0
|
24.3
|
1.0
|
|
H
|
B:GLY16
|
4.0
|
20.3
|
1.0
|
|
NH1
|
B:ARG188
|
4.1
|
18.4
|
1.0
|
|
HB3
|
B:PRO54
|
4.1
|
21.4
|
1.0
|
|
CA
|
B:CYS18
|
4.2
|
18.3
|
1.0
|
|
H
|
B:GLY17
|
4.2
|
20.1
|
1.0
|
|
HH12
|
B:ARG188
|
4.3
|
22.0
|
1.0
|
|
HE1
|
B:TYR52
|
4.4
|
23.3
|
1.0
|
|
O
|
B:HOH451
|
4.4
|
21.4
|
1.0
|
|
N
|
B:GLY17
|
4.5
|
16.7
|
1.0
|
|
HH
|
B:TYR52
|
4.6
|
32.9
|
1.0
|
|
HG2
|
B:PRO54
|
4.6
|
24.3
|
1.0
|
|
CD
|
B:ARG188
|
4.6
|
21.6
|
1.0
|
|
HA2
|
B:GLY16
|
4.6
|
20.3
|
1.0
|
|
HB2
|
B:CYS183
|
4.6
|
21.0
|
1.0
|
|
CG
|
B:PRO54
|
4.6
|
20.2
|
1.0
|
|
N
|
B:GLY16
|
4.7
|
16.9
|
1.0
|
|
H
|
B:CYS15
|
4.7
|
20.8
|
1.0
|
|
HA
|
B:CYS18
|
4.8
|
22.0
|
1.0
|
|
SG
|
B:CYS12
|
4.8
|
17.5
|
1.0
|
|
SG
|
B:CYS15
|
4.8
|
17.7
|
1.0
|
|
CB
|
B:PRO54
|
4.8
|
17.9
|
1.0
|
|
HA
|
B:CYS183
|
4.8
|
21.0
|
1.0
|
|
H
|
B:SER19
|
4.8
|
20.3
|
1.0
|
|
SG
|
B:CYS183
|
4.9
|
18.9
|
1.0
|
|
CZ
|
B:ARG188
|
4.9
|
18.2
|
1.0
|
|
C
|
B:GLY16
|
4.9
|
17.1
|
1.0
|
|
C
|
B:GLY17
|
5.0
|
16.9
|
1.0
|
|
HD3
|
B:ARG188
|
5.0
|
25.9
|
1.0
|
|
CA
|
B:GLY16
|
5.0
|
16.9
|
1.0
|
|
Iron binding site 9 out
of 40 in 6cza
Go back to
Iron Binding Sites List in 6cza
Iron binding site 9 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe302
b:16.1
occ:1.00
|
FE1
|
B:SF4302
|
0.0
|
16.1
|
1.0
|
|
S3
|
B:SF4302
|
2.3
|
16.6
|
1.0
|
|
SG
|
B:CYS167
|
2.3
|
15.9
|
1.0
|
|
S2
|
B:SF4302
|
2.3
|
16.7
|
1.0
|
|
S4
|
B:SF4302
|
2.3
|
16.3
|
1.0
|
|
FE3
|
B:SF4302
|
2.7
|
16.9
|
1.0
|
|
FE2
|
B:SF4302
|
2.7
|
16.6
|
1.0
|
|
FE4
|
B:SF4302
|
2.8
|
16.6
|
1.0
|
|
H
|
B:CYS167
|
3.1
|
19.0
|
1.0
|
|
CB
|
B:CYS167
|
3.3
|
16.1
|
1.0
|
|
HB2
|
B:CYS167
|
3.4
|
19.3
|
1.0
|
|
N
|
B:CYS167
|
3.4
|
15.9
|
1.0
|
|
HD21
|
B:ASN26
|
3.4
|
20.6
|
1.0
|
|
HB3
|
B:PRO177
|
3.4
|
21.3
|
1.0
|
|
CA
|
B:CYS167
|
3.8
|
15.8
|
1.0
|
|
H
|
B:ALA178
|
3.9
|
20.1
|
1.0
|
|
HA
|
B:CYS167
|
3.9
|
19.0
|
1.0
|
|
S1
|
B:SF4302
|
3.9
|
17.2
|
1.0
|
|
HA
|
B:PHE166
|
4.0
|
22.0
|
1.0
|
|
C
|
B:PHE166
|
4.0
|
17.6
|
1.0
|
|
ND2
|
B:ASN26
|
4.2
|
17.2
|
1.0
|
|
H
|
B:CYS179
|
4.2
|
20.2
|
1.0
|
|
HB3
|
B:CYS167
|
4.2
|
19.3
|
1.0
|
|
CB
|
B:PRO177
|
4.3
|
17.7
|
1.0
|
|
HA
|
B:PRO177
|
4.3
|
21.9
|
1.0
|
|
HD22
|
B:ASN26
|
4.4
|
20.6
|
1.0
|
|
HB3
|
B:ALA178
|
4.4
|
21.5
|
1.0
|
|
CA
|
B:PHE166
|
4.4
|
18.3
|
1.0
|
|
H
|
B:PHE166
|
4.4
|
20.5
|
1.0
|
|
N
|
B:ALA178
|
4.5
|
16.7
|
1.0
|
|
SG
|
B:CYS179
|
4.5
|
17.3
|
1.0
|
|
HB2
|
B:PRO177
|
4.6
|
21.3
|
1.0
|
|
N
|
B:PHE166
|
4.6
|
17.1
|
1.0
|
|
HG2
|
B:GLU25
|
4.7
|
20.4
|
1.0
|
|
O
|
B:PHE166
|
4.7
|
17.5
|
1.0
|
|
CA
|
B:PRO177
|
4.8
|
18.2
|
1.0
|
|
H
|
B:THR165
|
4.8
|
19.9
|
1.0
|
|
SG
|
B:CYS22
|
4.8
|
16.6
|
1.0
|
|
SG
|
B:CYS164
|
4.9
|
16.7
|
1.0
|
|
HE3
|
B:TRP34
|
4.9
|
20.9
|
1.0
|
|
HB3
|
B:CYS179
|
4.9
|
21.4
|
1.0
|
|
Iron binding site 10 out
of 40 in 6cza
Go back to
Iron Binding Sites List in 6cza
Iron binding site 10 out
of 40 in the The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of The Arsenate Respiratory Reductase (Arr) Complex From Shewanella Sp. Ana-3 Bound to Phosphate within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe302
b:16.6
occ:1.00
|
FE2
|
B:SF4302
|
0.0
|
16.6
|
1.0
|
|
S4
|
B:SF4302
|
2.3
|
16.3
|
1.0
|
|
S1
|
B:SF4302
|
2.3
|
17.2
|
1.0
|
|
SG
|
B:CYS22
|
2.3
|
16.6
|
1.0
|
|
S3
|
B:SF4302
|
2.4
|
16.6
|
1.0
|
|
FE4
|
B:SF4302
|
2.7
|
16.6
|
1.0
|
|
FE3
|
B:SF4302
|
2.7
|
16.9
|
1.0
|
|
FE1
|
B:SF4302
|
2.7
|
16.1
|
1.0
|
|
HB2
|
B:CYS22
|
3.0
|
20.1
|
1.0
|
|
CB
|
B:CYS22
|
3.2
|
16.7
|
1.0
|
|
HD22
|
B:ASN26
|
3.3
|
20.6
|
1.0
|
|
HD21
|
B:ASN26
|
3.4
|
20.6
|
1.0
|
|
HE3
|
B:TRP34
|
3.6
|
20.9
|
1.0
|
|
ND2
|
B:ASN26
|
3.7
|
17.2
|
1.0
|
|
HA
|
B:CYS22
|
3.7
|
19.9
|
1.0
|
|
HB2
|
B:SER35
|
3.7
|
22.4
|
1.0
|
|
HB2
|
B:TRP34
|
3.8
|
20.9
|
1.0
|
|
S2
|
B:SF4302
|
3.9
|
16.7
|
1.0
|
|
HB3
|
B:CYS22
|
4.0
|
20.1
|
1.0
|
|
CA
|
B:CYS22
|
4.1
|
16.6
|
1.0
|
|
HB2
|
B:CYS164
|
4.2
|
19.2
|
1.0
|
|
H
|
B:SER35
|
4.3
|
22.1
|
1.0
|
|
HB3
|
B:TRP34
|
4.3
|
20.9
|
1.0
|
|
HB3
|
B:CYS179
|
4.4
|
21.4
|
1.0
|
|
HA
|
B:CYS164
|
4.4
|
19.8
|
1.0
|
|
CE3
|
B:TRP34
|
4.5
|
17.4
|
1.0
|
|
HB3
|
B:SER35
|
4.5
|
22.4
|
1.0
|
|
CB
|
B:TRP34
|
4.5
|
17.5
|
1.0
|
|
CB
|
B:SER35
|
4.5
|
18.7
|
1.0
|
|
SG
|
B:CYS167
|
4.6
|
15.9
|
1.0
|
|
N
|
B:SER35
|
4.7
|
18.4
|
1.0
|
|
SG
|
B:CYS164
|
4.7
|
16.7
|
1.0
|
|
CB
|
B:CYS164
|
4.8
|
16.0
|
1.0
|
|
SG
|
B:CYS179
|
4.9
|
17.3
|
1.0
|
|
H
|
B:CYS179
|
4.9
|
20.2
|
1.0
|
|
CG
|
B:ASN26
|
4.9
|
17.7
|
1.0
|
|
Reference:
N.R.Glasser,
P.H.Oyala,
T.H.Osborne,
J.M.Santini,
D.K.Newman.
Structural and Mechanistic Analysis of the Arsenate Respiratory Reductase Provides Insight Into Environmental Arsenic Transformations. Proc. Natl. Acad. Sci. V. 115 E8614 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30104376
DOI: 10.1073/PNAS.1807984115
Page generated: Tue Aug 6 16:08:17 2024
|
