Iron in PDB 6d9f: Protein 60 with Aldehyde Deformylating Oxidase Activity From Kitasatospora Setae

The structure of Protein 60 with Aldehyde Deformylating Oxidase Activity From Kitasatospora Setae, PDB code: 6d9f was solved by R.Arenas, D.K.Wilson, W.S.Mak, J.B.Siegel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	66.76 / 2.03
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	77.630, 79.030, 124.730, 90.00, 90.00, 90.00
R / Rfree (%)	19.8 / 23.4

The binding sites of Iron atom in the Protein 60 with Aldehyde Deformylating Oxidase Activity From Kitasatospora Setae (pdb code 6d9f). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Protein 60 with Aldehyde Deformylating Oxidase Activity From Kitasatospora Setae, PDB code: 6d9f:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Protein 60 with Aldehyde Deformylating Oxidase Activity From Kitasatospora Setae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Protein 60 with Aldehyde Deformylating Oxidase Activity From Kitasatospora Setae within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe401 b:36.4 occ:1.00 OE2 A:GLU114 2.2 32.7 1.0 OE2 A:GLU180 2.3 34.1 1.0 ND1 A:HIS215 2.3 25.5 1.0 OE2 A:GLU212 2.4 43.3 1.0 OE1 A:GLU212 2.7 47.0 1.0 CD A:GLU212 2.9 39.9 1.0 CE1 A:HIS215 3.1 24.4 1.0 CD A:GLU114 3.1 28.2 1.0 OE1 A:GLU114 3.3 30.0 1.0 CD A:GLU180 3.4 31.9 1.0 CG A:HIS215 3.5 28.2 1.0 FE A:FE402 3.5 37.2 1.0 CG A:GLU180 3.8 30.4 1.0 CB A:HIS215 3.9 26.4 1.0 NE2 A:GLN110 4.1 27.3 1.0 NE2 A:HIS215 4.3 27.5 1.0 CG A:GLU212 4.4 36.7 1.0 OE1 A:GLU180 4.4 44.8 1.0 CD2 A:HIS215 4.5 28.5 1.0 CG A:GLU114 4.5 25.4 1.0 CA A:GLU212 4.8 29.3 1.0 CE1 A:HIS117 4.9 26.1 1.0

Iron binding site 2 out of 4 in the Protein 60 with Aldehyde Deformylating Oxidase Activity From Kitasatospora Setae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Protein 60 with Aldehyde Deformylating Oxidase Activity From Kitasatospora Setae within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe402 b:37.2 occ:1.00 OE1 A:GLU114 1.9 30.0 1.0 OE1 A:GLU84 2.1 40.8 1.0 ND1 A:HIS117 2.4 25.2 1.0 CD A:GLU84 2.9 35.6 1.0 OE2 A:GLU84 3.0 34.4 1.0 CD A:GLU114 3.1 28.2 1.0 CE1 A:HIS117 3.2 26.1 1.0 OE1 A:GLU212 3.4 47.0 1.0 FE A:FE401 3.5 36.4 1.0 CG A:HIS117 3.5 28.0 1.0 OE2 A:GLU114 3.5 32.7 1.0 CB A:HIS117 4.0 25.4 1.0 CG A:GLU114 4.4 25.4 1.0 NE2 A:HIS117 4.4 26.6 1.0 CG A:GLU84 4.4 35.0 1.0 CA A:GLU114 4.4 24.4 1.0 CD2 A:HIS117 4.6 27.9 1.0 CD A:GLU212 4.6 39.9 1.0 CB A:GLU114 4.6 24.1 1.0 CE1 A:HIS215 4.8 24.4 1.0 CB A:GLU84 4.9 30.2 1.0 ND1 A:HIS215 5.0 25.5 1.0

Iron binding site 3 out of 4 in the Protein 60 with Aldehyde Deformylating Oxidase Activity From Kitasatospora Setae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Protein 60 with Aldehyde Deformylating Oxidase Activity From Kitasatospora Setae within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe401 b:42.9 occ:1.00 OE1 B:GLU180 2.0 49.4 1.0 OE2 B:GLU114 2.3 43.3 1.0 OE2 B:GLU212 2.4 49.5 1.0 ND1 B:HIS215 2.4 31.6 1.0 OE1 B:GLU212 2.8 59.9 1.0 CD B:GLU212 2.9 49.8 1.0 CD B:GLU180 3.1 48.8 1.0 CD B:GLU114 3.2 39.6 1.0 CE1 B:HIS215 3.2 33.5 1.0 OE1 B:GLU114 3.3 41.5 1.0 FE B:FE402 3.4 46.2 1.0 CG B:HIS215 3.5 32.6 1.0 CG B:GLU180 3.6 45.2 1.0 CB B:HIS215 3.9 30.4 1.0 OE2 B:GLU180 4.2 50.3 1.0 NE2 B:GLN110 4.2 27.9 1.0 NE2 B:HIS215 4.4 35.2 1.0 CG B:GLU212 4.4 44.6 1.0 CG B:GLU114 4.6 37.6 1.0 CD2 B:HIS215 4.6 33.4 1.0 CE1 B:HIS117 4.9 34.4 1.0 CA B:GLU212 4.9 37.3 1.0 ND1 B:HIS117 5.0 33.5 1.0

Iron binding site 4 out of 4 in the Protein 60 with Aldehyde Deformylating Oxidase Activity From Kitasatospora Setae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Protein 60 with Aldehyde Deformylating Oxidase Activity From Kitasatospora Setae within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe402 b:46.2 occ:1.00 OE1 B:GLU114 2.0 41.5 1.0 OE1 B:GLU84 2.2 55.7 1.0 ND1 B:HIS117 2.4 33.5 1.0 CD B:GLU84 2.9 49.0 1.0 OE2 B:GLU84 3.0 54.9 1.0 CD B:GLU114 3.1 39.6 1.0 CE1 B:HIS117 3.1 34.4 1.0 FE B:FE401 3.4 42.9 1.0 CG B:HIS117 3.5 35.4 1.0 OE1 B:GLU212 3.6 59.9 1.0 OE2 B:GLU114 3.6 43.3 1.0 CB B:HIS117 4.0 36.6 1.0 NE2 B:HIS117 4.4 36.8 1.0 CG B:GLU114 4.4 37.6 1.0 CG B:GLU84 4.4 46.0 1.0 CA B:GLU114 4.5 32.7 1.0 CD2 B:HIS117 4.6 35.5 1.0 CB B:GLU114 4.6 34.1 1.0 CD B:GLU212 4.7 49.8 1.0 CE1 B:HIS215 4.8 33.5 1.0 ND1 B:HIS215 4.9 31.6 1.0 CB B:GLU84 5.0 40.0 1.0

R.Arenas, D.K.Wilson, W.S.Mak, J.B.Siegel. Protein 60 with Aldehyde Deformylating Oxidase Activity From Kitasatospora Setae To Be Published.