Iron in PDB 6ef8: Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 42;

Binding sites:

The binding sites of Iron atom in the Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens (pdb code 6ef8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 42 binding sites of Iron where determined in the Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens, PDB code: 6ef8:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 42 in the Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:54.9 occ:1.00 FE A:HEC501 0.0 54.9 1.0 NE2 B:HIS16 2.0 53.0 1.0 NE2 A:HIS332 2.0 54.2 1.0 NA A:HEC501 2.0 54.9 1.0 ND A:HEC501 2.0 54.9 1.0 NB A:HEC501 2.0 54.9 1.0 NC A:HEC501 2.0 54.9 1.0 CD2 B:HIS16 2.9 53.0 1.0 CD2 A:HIS332 3.0 54.2 1.0 CE1 B:HIS16 3.0 53.0 1.0 CE1 A:HIS332 3.0 54.2 1.0 C4C A:HEC501 3.0 54.9 1.0 C1D A:HEC501 3.0 54.9 1.0 C4A A:HEC501 3.0 54.9 1.0 C1B A:HEC501 3.0 54.9 1.0 C4D A:HEC501 3.1 54.9 1.0 C1A A:HEC501 3.1 54.9 1.0 C4B A:HEC501 3.1 54.9 1.0 C1C A:HEC501 3.1 54.9 1.0 CHD A:HEC501 3.3 54.9 1.0 CHB A:HEC501 3.4 54.9 1.0 CHA A:HEC501 3.4 54.9 1.0 CHC A:HEC501 3.5 54.9 1.0 ND1 B:HIS16 4.0 53.0 1.0 CG B:HIS16 4.0 53.0 1.0 ND1 A:HIS332 4.1 54.2 1.0 CG A:HIS332 4.1 54.2 1.0 C3C A:HEC501 4.2 54.9 1.0 C3A A:HEC501 4.2 54.9 1.0 C2D A:HEC501 4.3 54.9 1.0 C2B A:HEC501 4.3 54.9 1.0 C2A A:HEC501 4.3 54.9 1.0 C3D A:HEC501 4.3 54.9 1.0 C3B A:HEC501 4.3 54.9 1.0 C2C A:HEC501 4.3 54.9 1.0

Iron binding site 2 out of 42 in the Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:54.6 occ:1.00 FE A:HEC502 0.0 54.6 1.0 NA A:HEC502 2.0 54.6 1.0 NC A:HEC502 2.0 54.6 1.0 NE2 A:HIS243 2.0 53.0 1.0 ND A:HEC502 2.0 54.6 1.0 NB A:HEC502 2.0 54.6 1.0 NE2 A:HIS110 2.1 53.5 1.0 C1A A:HEC502 3.0 54.6 1.0 CE1 A:HIS243 3.0 53.0 1.0 C4D A:HEC502 3.0 54.6 1.0 CE1 A:HIS110 3.0 53.5 1.0 CD2 A:HIS243 3.0 53.0 1.0 C1C A:HEC502 3.0 54.6 1.0 C4C A:HEC502 3.0 54.6 1.0 C4B A:HEC502 3.0 54.6 1.0 CD2 A:HIS110 3.1 53.5 1.0 C4A A:HEC502 3.1 54.6 1.0 C1D A:HEC502 3.1 54.6 1.0 C1B A:HEC502 3.1 54.6 1.0 CHA A:HEC502 3.4 54.6 1.0 CHC A:HEC502 3.4 54.6 1.0 CHD A:HEC502 3.4 54.6 1.0 CHB A:HEC502 3.5 54.6 1.0 ND1 A:HIS243 4.1 53.0 1.0 ND1 A:HIS110 4.1 53.5 1.0 CG A:HIS243 4.2 53.0 1.0 CG A:HIS110 4.2 53.5 1.0 C2A A:HEC502 4.2 54.6 1.0 C3C A:HEC502 4.3 54.6 1.0 C3A A:HEC502 4.3 54.6 1.0 C2C A:HEC502 4.3 54.6 1.0 C3D A:HEC502 4.3 54.6 1.0 C3B A:HEC502 4.3 54.6 1.0 C2B A:HEC502 4.3 54.6 1.0 C2D A:HEC502 4.3 54.6 1.0

Iron binding site 3 out of 42 in the Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe503 b:57.2 occ:1.00 FE A:HEC503 0.0 57.2 1.0 NB A:HEC503 2.0 57.2 1.0 NC A:HEC503 2.0 57.2 1.0 NA A:HEC503 2.1 57.2 1.0 NE2 A:HIS2 2.1 57.1 1.0 ND A:HEC503 2.1 57.2 1.0 NE2 A:HIS51 2.1 58.2 1.0 CD2 A:HIS2 3.0 57.1 1.0 CE1 A:HIS51 3.0 58.2 1.0 C1C A:HEC503 3.0 57.2 1.0 C1D A:HEC503 3.0 57.2 1.0 C4B A:HEC503 3.1 57.2 1.0 C1B A:HEC503 3.1 57.2 1.0 CE1 A:HIS2 3.1 57.1 1.0 C4C A:HEC503 3.1 57.2 1.0 C4A A:HEC503 3.1 57.2 1.0 C1A A:HEC503 3.1 57.2 1.0 CD2 A:HIS51 3.1 58.2 1.0 C4D A:HEC503 3.1 57.2 1.0 CHD A:HEC503 3.4 57.2 1.0 CHC A:HEC503 3.4 57.2 1.0 CHB A:HEC503 3.4 57.2 1.0 CHA A:HEC503 3.5 57.2 1.0 ND1 A:HIS51 4.2 58.2 1.0 CG A:HIS2 4.2 57.1 1.0 ND1 A:HIS2 4.2 57.1 1.0 CG A:HIS51 4.2 58.2 1.0 C2C A:HEC503 4.3 57.2 1.0 C2B A:HEC503 4.3 57.2 1.0 C3B A:HEC503 4.3 57.2 1.0 C3A A:HEC503 4.3 57.2 1.0 C3C A:HEC503 4.3 57.2 1.0 C2D A:HEC503 4.3 57.2 1.0 C2A A:HEC503 4.3 57.2 1.0 C3D A:HEC503 4.3 57.2 1.0 CD2 A:PHE1 4.5 58.7 1.0

Iron binding site 4 out of 42 in the Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe504 b:56.0 occ:1.00 FE A:HEC504 0.0 56.0 1.0 NC A:HEC504 2.0 56.0 1.0 NA A:HEC504 2.0 56.0 1.0 NE2 A:HIS144 2.0 55.3 1.0 ND A:HEC504 2.0 56.0 1.0 NB A:HEC504 2.0 56.0 1.0 NE2 A:HIS335 2.0 54.7 1.0 CE1 A:HIS335 2.9 54.7 1.0 CE1 A:HIS144 3.0 55.3 1.0 C4C A:HEC504 3.0 56.0 1.0 C1D A:HEC504 3.0 56.0 1.0 CD2 A:HIS144 3.0 55.3 1.0 C4A A:HEC504 3.0 56.0 1.0 C1B A:HEC504 3.0 56.0 1.0 C1A A:HEC504 3.1 56.0 1.0 C1C A:HEC504 3.1 56.0 1.0 C4D A:HEC504 3.1 56.0 1.0 C4B A:HEC504 3.1 56.0 1.0 CD2 A:HIS335 3.1 54.7 1.0 CHD A:HEC504 3.4 56.0 1.0 CHB A:HEC504 3.4 56.0 1.0 CHA A:HEC504 3.4 56.0 1.0 CHC A:HEC504 3.5 56.0 1.0 ND1 A:HIS335 4.0 54.7 1.0 ND1 A:HIS144 4.1 55.3 1.0 CG A:HIS335 4.2 54.7 1.0 CG A:HIS144 4.2 55.3 1.0 C3C A:HEC504 4.2 56.0 1.0 C3A A:HEC504 4.3 56.0 1.0 C2A A:HEC504 4.3 56.0 1.0 C2D A:HEC504 4.3 56.0 1.0 C2C A:HEC504 4.3 56.0 1.0 C2B A:HEC504 4.3 56.0 1.0 C3D A:HEC504 4.3 56.0 1.0 C3B A:HEC504 4.3 56.0 1.0

Iron binding site 5 out of 42 in the Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe505 b:57.9 occ:1.00 FE A:HEC505 0.0 57.9 1.0 NB A:HEC505 2.0 57.9 1.0 ND A:HEC505 2.0 57.9 1.0 NC A:HEC505 2.0 57.9 1.0 NE2 A:HIS13 2.0 55.8 1.0 NA A:HEC505 2.0 57.9 1.0 NE2 A:HIS147 2.1 56.5 1.0 CE1 A:HIS147 2.9 56.5 1.0 CE1 A:HIS13 3.0 55.8 1.0 C4B A:HEC505 3.0 57.9 1.0 C4D A:HEC505 3.0 57.9 1.0 C1C A:HEC505 3.0 57.9 1.0 C1D A:HEC505 3.0 57.9 1.0 C1A A:HEC505 3.0 57.9 1.0 CD2 A:HIS13 3.1 55.8 1.0 C4C A:HEC505 3.1 57.9 1.0 C1B A:HEC505 3.1 57.9 1.0 C4A A:HEC505 3.1 57.9 1.0 CD2 A:HIS147 3.1 56.5 1.0 CHA A:HEC505 3.4 57.9 1.0 CHC A:HEC505 3.4 57.9 1.0 CHD A:HEC505 3.4 57.9 1.0 CHB A:HEC505 3.5 57.9 1.0 ND1 A:HIS147 4.0 56.5 1.0 ND1 A:HIS13 4.1 55.8 1.0 CG A:HIS147 4.1 56.5 1.0 CG A:HIS13 4.2 55.8 1.0 C3B A:HEC505 4.3 57.9 1.0 C2C A:HEC505 4.3 57.9 1.0 C2D A:HEC505 4.3 57.9 1.0 C3D A:HEC505 4.3 57.9 1.0 C2A A:HEC505 4.3 57.9 1.0 C2B A:HEC505 4.3 57.9 1.0 C3C A:HEC505 4.3 57.9 1.0 C3A A:HEC505 4.3 57.9 1.0

Iron binding site 6 out of 42 in the Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe506 b:58.1 occ:1.00 FE A:HEC506 0.0 58.1 1.0 NA A:HEC506 2.0 58.1 1.0 ND A:HEC506 2.0 58.1 1.0 NC A:HEC506 2.1 58.1 1.0 NE2 A:HIS257 2.1 54.3 1.0 NB A:HEC506 2.1 58.1 1.0 NE2 A:HIS404 2.1 59.5 1.0 CE1 A:HIS404 3.0 59.5 1.0 C4C A:HEC506 3.0 58.1 1.0 C1B A:HEC506 3.0 58.1 1.0 C4A A:HEC506 3.0 58.1 1.0 C1D A:HEC506 3.0 58.1 1.0 CE1 A:HIS257 3.0 54.3 1.0 CD2 A:HIS257 3.1 54.3 1.0 C1A A:HEC506 3.1 58.1 1.0 C4D A:HEC506 3.1 58.1 1.0 CD2 A:HIS404 3.2 59.5 1.0 C1C A:HEC506 3.2 58.1 1.0 C4B A:HEC506 3.2 58.1 1.0 CHD A:HEC506 3.3 58.1 1.0 CHB A:HEC506 3.3 58.1 1.0 CHA A:HEC506 3.5 58.1 1.0 CHC A:HEC506 3.6 58.1 1.0 ND1 A:HIS404 4.1 59.5 1.0 ND1 A:HIS257 4.1 54.3 1.0 CG A:HIS257 4.2 54.3 1.0 C3A A:HEC506 4.2 58.1 1.0 CG A:HIS404 4.2 59.5 1.0 C3C A:HEC506 4.3 58.1 1.0 C2B A:HEC506 4.3 58.1 1.0 C2D A:HEC506 4.3 58.1 1.0 C2A A:HEC506 4.3 58.1 1.0 C3D A:HEC506 4.3 58.1 1.0 C2C A:HEC506 4.3 58.1 1.0 C3B A:HEC506 4.4 58.1 1.0

Iron binding site 7 out of 42 in the Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe501 b:56.8 occ:1.00 FE B:HEC501 0.0 56.8 1.0 NE2 B:HIS332 2.0 55.6 1.0 NA B:HEC501 2.0 56.8 1.0 ND B:HEC501 2.0 56.8 1.0 NB B:HEC501 2.0 56.8 1.0 NC B:HEC501 2.0 56.8 1.0 NE2 D:HIS16 2.1 56.2 1.0 CD2 B:HIS332 3.0 55.6 1.0 CE1 B:HIS332 3.0 55.6 1.0 CE1 D:HIS16 3.0 56.2 1.0 C4C B:HEC501 3.0 56.8 1.0 C1D B:HEC501 3.0 56.8 1.0 C4A B:HEC501 3.0 56.8 1.0 C1B B:HEC501 3.0 56.8 1.0 CD2 D:HIS16 3.0 56.2 1.0 C4D B:HEC501 3.1 56.8 1.0 C1A B:HEC501 3.1 56.8 1.0 C4B B:HEC501 3.1 56.8 1.0 C1C B:HEC501 3.1 56.8 1.0 CHD B:HEC501 3.3 56.8 1.0 CHB B:HEC501 3.4 56.8 1.0 CHA B:HEC501 3.4 56.8 1.0 CHC B:HEC501 3.5 56.8 1.0 ND1 B:HIS332 4.1 55.6 1.0 CG B:HIS332 4.1 55.6 1.0 ND1 D:HIS16 4.1 56.2 1.0 CG D:HIS16 4.1 56.2 1.0 C3C B:HEC501 4.2 56.8 1.0 C3A B:HEC501 4.2 56.8 1.0 C2D B:HEC501 4.2 56.8 1.0 C2B B:HEC501 4.3 56.8 1.0 C2A B:HEC501 4.3 56.8 1.0 C3D B:HEC501 4.3 56.8 1.0 C3B B:HEC501 4.3 56.8 1.0 C2C B:HEC501 4.3 56.8 1.0

Iron binding site 8 out of 42 in the Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe502 b:54.7 occ:1.00 FE B:HEC502 0.0 54.7 1.0 NA B:HEC502 2.0 54.7 1.0 NC B:HEC502 2.0 54.7 1.0 NE2 B:HIS243 2.0 53.5 1.0 ND B:HEC502 2.0 54.7 1.0 NB B:HEC502 2.0 54.7 1.0 NE2 B:HIS110 2.1 52.0 1.0 C1A B:HEC502 3.0 54.7 1.0 CE1 B:HIS243 3.0 53.5 1.0 CE1 B:HIS110 3.0 52.0 1.0 C4D B:HEC502 3.0 54.7 1.0 CD2 B:HIS243 3.0 53.5 1.0 C1C B:HEC502 3.0 54.7 1.0 C4C B:HEC502 3.0 54.7 1.0 C4B B:HEC502 3.0 54.7 1.0 CD2 B:HIS110 3.1 52.0 1.0 C4A B:HEC502 3.1 54.7 1.0 C1D B:HEC502 3.1 54.7 1.0 C1B B:HEC502 3.1 54.7 1.0 CHA B:HEC502 3.4 54.7 1.0 CHC B:HEC502 3.4 54.7 1.0 CHD B:HEC502 3.4 54.7 1.0 CHB B:HEC502 3.5 54.7 1.0 ND1 B:HIS243 4.1 53.5 1.0 ND1 B:HIS110 4.1 52.0 1.0 CG B:HIS243 4.2 53.5 1.0 CG B:HIS110 4.2 52.0 1.0 C2A B:HEC502 4.2 54.7 1.0 C3C B:HEC502 4.2 54.7 1.0 C3A B:HEC502 4.3 54.7 1.0 C2C B:HEC502 4.3 54.7 1.0 C3D B:HEC502 4.3 54.7 1.0 C3B B:HEC502 4.3 54.7 1.0 C2B B:HEC502 4.3 54.7 1.0 C2D B:HEC502 4.3 54.7 1.0

Iron binding site 9 out of 42 in the Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe503 b:57.1 occ:1.00 FE B:HEC503 0.0 57.1 1.0 NB B:HEC503 2.0 57.1 1.0 NC B:HEC503 2.0 57.1 1.0 NE2 B:HIS2 2.1 57.8 1.0 NA B:HEC503 2.1 57.1 1.0 ND B:HEC503 2.1 57.1 1.0 NE2 B:HIS51 2.1 58.0 1.0 CD2 B:HIS2 3.0 57.8 1.0 CE1 B:HIS51 3.0 58.0 1.0 C1C B:HEC503 3.0 57.1 1.0 C1D B:HEC503 3.0 57.1 1.0 C4B B:HEC503 3.1 57.1 1.0 C1B B:HEC503 3.1 57.1 1.0 CE1 B:HIS2 3.1 57.8 1.0 C4C B:HEC503 3.1 57.1 1.0 C4A B:HEC503 3.1 57.1 1.0 C1A B:HEC503 3.1 57.1 1.0 CD2 B:HIS51 3.1 58.0 1.0 C4D B:HEC503 3.1 57.1 1.0 CHD B:HEC503 3.4 57.1 1.0 CHC B:HEC503 3.4 57.1 1.0 CHB B:HEC503 3.4 57.1 1.0 CHA B:HEC503 3.5 57.1 1.0 ND1 B:HIS51 4.2 58.0 1.0 CG B:HIS2 4.2 57.8 1.0 ND1 B:HIS2 4.2 57.8 1.0 CG B:HIS51 4.2 58.0 1.0 C2C B:HEC503 4.3 57.1 1.0 C2B B:HEC503 4.3 57.1 1.0 C3B B:HEC503 4.3 57.1 1.0 C3A B:HEC503 4.3 57.1 1.0 C3C B:HEC503 4.3 57.1 1.0 C2D B:HEC503 4.3 57.1 1.0 C2A B:HEC503 4.3 57.1 1.0 C3D B:HEC503 4.3 57.1 1.0 CD2 B:PHE1 4.5 58.8 1.0

Iron binding site 10 out of 42 in the Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em of the Omcs Nanowires From Geobacter Sulfurreducens within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe504 b:54.0 occ:1.00 FE B:HEC504 0.0 54.0 1.0 NC B:HEC504 2.0 54.0 1.0 NA B:HEC504 2.0 54.0 1.0 NE2 B:HIS144 2.0 54.4 1.0 ND B:HEC504 2.0 54.0 1.0 NB B:HEC504 2.0 54.0 1.0 NE2 B:HIS335 2.0 52.3 1.0 CE1 B:HIS335 2.9 52.3 1.0 CE1 B:HIS144 3.0 54.4 1.0 C4C B:HEC504 3.0 54.0 1.0 C1D B:HEC504 3.0 54.0 1.0 CD2 B:HIS144 3.0 54.4 1.0 C4A B:HEC504 3.0 54.0 1.0 C1B B:HEC504 3.0 54.0 1.0 C1A B:HEC504 3.1 54.0 1.0 C1C B:HEC504 3.1 54.0 1.0 C4D B:HEC504 3.1 54.0 1.0 C4B B:HEC504 3.1 54.0 1.0 CD2 B:HIS335 3.1 52.3 1.0 CHD B:HEC504 3.4 54.0 1.0 CHB B:HEC504 3.4 54.0 1.0 CHA B:HEC504 3.4 54.0 1.0 CHC B:HEC504 3.4 54.0 1.0 ND1 B:HIS335 4.0 52.3 1.0 ND1 B:HIS144 4.1 54.4 1.0 CG B:HIS335 4.2 52.3 1.0 CG B:HIS144 4.2 54.4 1.0 C3C B:HEC504 4.2 54.0 1.0 C3A B:HEC504 4.3 54.0 1.0 C2A B:HEC504 4.3 54.0 1.0 C2D B:HEC504 4.3 54.0 1.0 C2C B:HEC504 4.3 54.0 1.0 C2B B:HEC504 4.3 54.0 1.0 C3D B:HEC504 4.3 54.0 1.0 C3B B:HEC504 4.3 54.0 1.0

F.Wang, Y.Gu, J.P.O'brien, S.M.Yi, S.E.Yalcin, V.Srikanth, C.Shen, D.Vu, N.L.Ing, A.I.Hochbaum, E.H.Egelman, N.S.Malvankar. Structure of Microbial Nanowires Reveals Stacked Hemes That Transport Electrons Over Micrometers. Cell V. 177 361 2019.
ISSN: ISSN 1097-4172
PubMed: 30951668
DOI: 10.1016/J.CELL.2019.03.029