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Iron in PDB 6ex0: Crystal Structure of Relp (SAS2) From Staphylococcus Aureus Bound to Pppgpp in the Post-Catalytic State

Enzymatic activity of Crystal Structure of Relp (SAS2) From Staphylococcus Aureus Bound to Pppgpp in the Post-Catalytic State

All present enzymatic activity of Crystal Structure of Relp (SAS2) From Staphylococcus Aureus Bound to Pppgpp in the Post-Catalytic State:
2.7.6.5;

Protein crystallography data

The structure of Crystal Structure of Relp (SAS2) From Staphylococcus Aureus Bound to Pppgpp in the Post-Catalytic State, PDB code: 6ex0 was solved by M.C.Manav, D.E.Brodersen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.70 / 2.78
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 124.330, 124.330, 213.150, 90.00, 90.00, 90.00
R / Rfree (%) 21.8 / 26.3

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Relp (SAS2) From Staphylococcus Aureus Bound to Pppgpp in the Post-Catalytic State (pdb code 6ex0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Relp (SAS2) From Staphylococcus Aureus Bound to Pppgpp in the Post-Catalytic State, PDB code: 6ex0:

Iron binding site 1 out of 1 in 6ex0

Go back to Iron Binding Sites List in 6ex0
Iron binding site 1 out of 1 in the Crystal Structure of Relp (SAS2) From Staphylococcus Aureus Bound to Pppgpp in the Post-Catalytic State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Relp (SAS2) From Staphylococcus Aureus Bound to Pppgpp in the Post-Catalytic State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:0.3
occ:1.00
 O B:HOH402 2.4 62.5 1.0
OE1 B:GLU51 2.6 91.4 1.0
O A:HOH407 2.7 68.7 1.0
OE1 A:GLU51 2.8 82.9 1.0
O A:HOH403 2.9 0.1 1.0
O A:HOH409 2.9 0.8 1.0
CD B:GLU51 3.4 81.4 1.0
OE2 B:GLU51 3.4 92.8 1.0
CD A:GLU51 3.6 81.7 1.0
OE2 A:GLU51 3.7 86.5 1.0
O B:HOH407 3.8 87.8 1.0
OD2 A:ASP133 4.1 67.2 0.7
NZ B:LYS55 4.4 78.8 1.0
OD2 B:ASP133 4.4 77.8 1.0
NZ A:LYS55 4.4 86.3 1.0
CE A:LYS55 4.4 75.4 1.0
CE B:LYS55 4.7 70.2 1.0
CG B:GLU51 4.7 62.5 1.0
CG A:GLU51 4.9 68.2 1.0
OD2 A:ASP133 5.0 65.1 0.3

Reference:

M.C.Manav, J.Beljantseva, M.S.Bojer, T.Tenson, H.Ingmer, V.Hauryliuk, D.E.Brodersen. Structural Basis For (P)Ppgpp Synthesis By Thestaphylococcus Aureussmall Alarmone Synthetase Relp. J. Biol. Chem. V. 293 3254 2018.
ISSN: ESSN 1083-351X
PubMed: 29326162
DOI: 10.1074/JBC.RA117.001374
Page generated: Wed Aug 6 05:53:47 2025

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