Iron in PDB 6fd1: 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A
Protein crystallography data
The structure of 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A, PDB code: 6fd1
was solved by
C.D.Stout,
E.A.Stura,
D.E.Mcree,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
100.00 /
1.35
|
|
Space group
|
P 41 21 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
54.840,
54.840,
92.640,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
15.3 /
21.3
|
Iron Binding Sites:
The binding sites of Iron atom in the 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A
(pdb code 6fd1). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 7 binding sites of Iron where determined in the
7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A, PDB code: 6fd1:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
Iron binding site 1 out
of 7 in 6fd1
Go back to
Iron Binding Sites List in 6fd1
Iron binding site 1 out
of 7 in the 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe107
b:19.1
occ:1.00
|
FE1
|
A:SF4107
|
0.0
|
19.1
|
1.0
|
|
S3
|
A:SF4107
|
2.3
|
20.5
|
1.0
|
|
S2
|
A:SF4107
|
2.3
|
20.1
|
1.0
|
|
SG
|
A:CYS39
|
2.3
|
20.4
|
1.0
|
|
S4
|
A:SF4107
|
2.3
|
20.4
|
1.0
|
|
FE4
|
A:SF4107
|
2.7
|
19.5
|
1.0
|
|
FE2
|
A:SF4107
|
2.8
|
19.3
|
1.0
|
|
FE3
|
A:SF4107
|
2.8
|
18.9
|
1.0
|
|
HA
|
A:CYS39
|
3.3
|
25.4
|
1.0
|
|
H
|
A:ASP41
|
3.3
|
26.5
|
1.0
|
|
CB
|
A:CYS39
|
3.3
|
20.1
|
1.0
|
|
H
|
A:ILE40
|
3.4
|
24.1
|
1.0
|
|
HB2
|
A:CYS39
|
3.4
|
24.1
|
1.0
|
|
HB2
|
A:PHE2
|
3.7
|
22.4
|
1.0
|
|
CA
|
A:CYS39
|
3.8
|
21.1
|
1.0
|
|
SG
|
A:CYS24
|
3.9
|
21.7
|
1.0
|
|
S1
|
A:SF4107
|
3.9
|
20.3
|
1.0
|
|
H
|
A:CYS42
|
4.0
|
25.2
|
1.0
|
|
HG23
|
A:ILE34
|
4.0
|
29.6
|
1.0
|
|
N
|
A:ILE40
|
4.0
|
20.1
|
1.0
|
|
N
|
A:ASP41
|
4.1
|
22.1
|
1.0
|
|
HA
|
A:ASP41
|
4.1
|
25.6
|
1.0
|
|
H
|
A:PHE2
|
4.2
|
23.4
|
1.0
|
|
HB3
|
A:CYS39
|
4.2
|
24.1
|
1.0
|
|
HG22
|
A:ILE34
|
4.2
|
29.6
|
1.0
|
|
C
|
A:CYS39
|
4.3
|
21.6
|
1.0
|
|
HD12
|
A:ILE34
|
4.4
|
29.2
|
1.0
|
|
HD1
|
A:PHE2
|
4.4
|
25.8
|
1.0
|
|
CG2
|
A:ILE34
|
4.6
|
19.7
|
1.0
|
|
CB
|
A:PHE2
|
4.6
|
18.6
|
1.0
|
|
CA
|
A:ASP41
|
4.6
|
21.4
|
1.0
|
|
H
|
A:ALA43
|
4.6
|
23.6
|
1.0
|
|
N
|
A:CYS42
|
4.7
|
21.0
|
1.0
|
|
SG
|
A:CYS45
|
4.8
|
20.2
|
1.0
|
|
HG23
|
A:VAL22
|
4.9
|
31.9
|
1.0
|
|
CD1
|
A:PHE2
|
4.9
|
21.5
|
1.0
|
|
SG
|
A:CYS20
|
4.9
|
20.9
|
1.0
|
|
HG13
|
A:ILE40
|
4.9
|
25.8
|
1.0
|
|
N
|
A:PHE2
|
4.9
|
19.5
|
1.0
|
|
SG
|
A:CYS42
|
4.9
|
21.8
|
1.0
|
|
C
|
A:ILE40
|
5.0
|
22.9
|
1.0
|
|
Iron binding site 2 out
of 7 in 6fd1
Go back to
Iron Binding Sites List in 6fd1
Iron binding site 2 out
of 7 in the 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe107
b:19.3
occ:1.00
|
FE2
|
A:SF4107
|
0.0
|
19.3
|
1.0
|
|
SG
|
A:CYS42
|
2.3
|
21.8
|
1.0
|
|
S1
|
A:SF4107
|
2.3
|
20.3
|
1.0
|
|
S4
|
A:SF4107
|
2.3
|
20.4
|
1.0
|
|
S3
|
A:SF4107
|
2.3
|
20.5
|
1.0
|
|
FE3
|
A:SF4107
|
2.7
|
18.9
|
1.0
|
|
FE4
|
A:SF4107
|
2.8
|
19.5
|
1.0
|
|
FE1
|
A:SF4107
|
2.8
|
19.1
|
1.0
|
|
H
|
A:CYS42
|
2.9
|
25.2
|
1.0
|
|
H
|
A:ALA43
|
3.3
|
23.6
|
1.0
|
|
HD2
|
A:PRO21
|
3.3
|
25.7
|
1.0
|
|
H
|
A:LEU44
|
3.5
|
25.3
|
1.0
|
|
CB
|
A:CYS42
|
3.5
|
21.8
|
1.0
|
|
N
|
A:CYS42
|
3.6
|
21.0
|
1.0
|
|
HB3
|
A:CYS42
|
3.7
|
26.2
|
1.0
|
|
N
|
A:ALA43
|
3.9
|
19.6
|
1.0
|
|
S2
|
A:SF4107
|
3.9
|
20.1
|
1.0
|
|
CA
|
A:CYS42
|
3.9
|
21.4
|
1.0
|
|
H
|
A:CYS45
|
4.1
|
24.2
|
1.0
|
|
HG13
|
A:ILE40
|
4.1
|
25.8
|
1.0
|
|
CD
|
A:PRO21
|
4.2
|
21.4
|
1.0
|
|
HB2
|
A:LEU44
|
4.2
|
25.2
|
1.0
|
|
C
|
A:CYS42
|
4.2
|
20.6
|
1.0
|
|
N
|
A:LEU44
|
4.2
|
21.1
|
1.0
|
|
HD3
|
A:PRO21
|
4.3
|
25.7
|
1.0
|
|
HA
|
A:CYS20
|
4.3
|
24.4
|
1.0
|
|
HB2
|
A:CYS42
|
4.3
|
26.2
|
1.0
|
|
H
|
A:ASP41
|
4.3
|
26.5
|
1.0
|
|
H
|
A:ILE40
|
4.3
|
24.1
|
1.0
|
|
C
|
A:ASP41
|
4.6
|
22.3
|
1.0
|
|
HG2
|
A:PRO21
|
4.6
|
27.1
|
1.0
|
|
HG12
|
A:ILE40
|
4.6
|
25.8
|
1.0
|
|
N
|
A:ASP41
|
4.6
|
22.1
|
1.0
|
|
SG
|
A:CYS45
|
4.7
|
20.2
|
1.0
|
|
SG
|
A:CYS20
|
4.7
|
20.9
|
1.0
|
|
HA
|
A:ASP41
|
4.7
|
25.6
|
1.0
|
|
SG
|
A:CYS39
|
4.7
|
20.4
|
1.0
|
|
HA
|
A:ALA43
|
4.8
|
25.3
|
1.0
|
|
CA
|
A:ALA43
|
4.8
|
21.1
|
1.0
|
|
CG
|
A:PRO21
|
4.8
|
22.6
|
1.0
|
|
HG3
|
A:PRO21
|
4.8
|
27.1
|
1.0
|
|
CG1
|
A:ILE40
|
4.8
|
21.5
|
1.0
|
|
HG23
|
A:VAL22
|
4.9
|
31.9
|
1.0
|
|
HA
|
A:CYS42
|
4.9
|
25.6
|
1.0
|
|
HB3
|
A:CYS45
|
4.9
|
25.3
|
1.0
|
|
N
|
A:CYS45
|
4.9
|
20.1
|
1.0
|
|
CA
|
A:ASP41
|
4.9
|
21.4
|
1.0
|
|
HG
|
A:LEU44
|
5.0
|
23.9
|
1.0
|
|
C
|
A:ALA43
|
5.0
|
21.5
|
1.0
|
|
Iron binding site 3 out
of 7 in 6fd1
Go back to
Iron Binding Sites List in 6fd1
Iron binding site 3 out
of 7 in the 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe107
b:18.9
occ:1.00
|
FE3
|
A:SF4107
|
0.0
|
18.9
|
1.0
|
|
S1
|
A:SF4107
|
2.3
|
20.3
|
1.0
|
|
SG
|
A:CYS45
|
2.3
|
20.2
|
1.0
|
|
S4
|
A:SF4107
|
2.3
|
20.4
|
1.0
|
|
S2
|
A:SF4107
|
2.3
|
20.1
|
1.0
|
|
FE2
|
A:SF4107
|
2.7
|
19.3
|
1.0
|
|
FE1
|
A:SF4107
|
2.8
|
19.1
|
1.0
|
|
FE4
|
A:SF4107
|
2.8
|
19.5
|
1.0
|
|
HB3
|
A:CYS45
|
3.0
|
25.3
|
1.0
|
|
CB
|
A:CYS45
|
3.3
|
21.1
|
1.0
|
|
H
|
A:CYS45
|
3.3
|
24.2
|
1.0
|
|
HB2
|
A:PHE2
|
3.8
|
22.4
|
1.0
|
|
HZ
|
A:PHE25
|
3.8
|
24.5
|
1.0
|
|
HE1
|
A:PHE25
|
3.9
|
25.1
|
1.0
|
|
S3
|
A:SF4107
|
3.9
|
20.5
|
1.0
|
|
HB2
|
A:CYS45
|
3.9
|
25.3
|
1.0
|
|
N
|
A:CYS45
|
4.0
|
20.1
|
1.0
|
|
HD12
|
A:ILE34
|
4.1
|
29.2
|
1.0
|
|
CA
|
A:CYS45
|
4.2
|
21.3
|
1.0
|
|
H
|
A:ALA43
|
4.3
|
23.6
|
1.0
|
|
H
|
A:LEU44
|
4.3
|
25.3
|
1.0
|
|
HD13
|
A:ILE34
|
4.4
|
29.2
|
1.0
|
|
CZ
|
A:PHE25
|
4.4
|
20.4
|
1.0
|
|
CE1
|
A:PHE25
|
4.4
|
20.9
|
1.0
|
|
CB
|
A:PHE2
|
4.5
|
18.6
|
1.0
|
|
HB3
|
A:PHE2
|
4.5
|
22.4
|
1.0
|
|
SG
|
A:CYS42
|
4.6
|
21.8
|
1.0
|
|
CD1
|
A:ILE34
|
4.7
|
19.5
|
1.0
|
|
HA
|
A:ALA43
|
4.7
|
25.3
|
1.0
|
|
N
|
A:LEU44
|
4.7
|
21.1
|
1.0
|
|
SG
|
A:CYS39
|
4.7
|
20.4
|
1.0
|
|
HB2
|
A:CYS20
|
4.8
|
24.9
|
1.0
|
|
CG
|
A:PHE2
|
4.8
|
19.1
|
1.0
|
|
HG12
|
A:ILE34
|
4.8
|
22.4
|
1.0
|
|
SG
|
A:CYS20
|
4.8
|
20.9
|
1.0
|
|
HG23
|
A:ILE54
|
4.8
|
34.6
|
1.0
|
|
HA
|
A:CYS20
|
4.9
|
24.4
|
1.0
|
|
HA
|
A:CYS45
|
4.9
|
25.6
|
1.0
|
|
H
|
A:GLU46
|
4.9
|
24.9
|
1.0
|
|
N
|
A:ALA43
|
4.9
|
19.6
|
1.0
|
|
HD12
|
A:ILE54
|
5.0
|
29.4
|
1.0
|
|
Iron binding site 4 out
of 7 in 6fd1
Go back to
Iron Binding Sites List in 6fd1
Iron binding site 4 out
of 7 in the 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe107
b:19.5
occ:1.00
|
FE4
|
A:SF4107
|
0.0
|
19.5
|
1.0
|
|
S2
|
A:SF4107
|
2.3
|
20.1
|
1.0
|
|
SG
|
A:CYS20
|
2.3
|
20.9
|
1.0
|
|
S3
|
A:SF4107
|
2.3
|
20.5
|
1.0
|
|
S1
|
A:SF4107
|
2.4
|
20.3
|
1.0
|
|
FE1
|
A:SF4107
|
2.7
|
19.1
|
1.0
|
|
FE2
|
A:SF4107
|
2.8
|
19.3
|
1.0
|
|
FE3
|
A:SF4107
|
2.8
|
18.9
|
1.0
|
|
HD2
|
A:PRO21
|
3.4
|
25.7
|
1.0
|
|
HB2
|
A:CYS20
|
3.4
|
24.9
|
1.0
|
|
CB
|
A:CYS20
|
3.4
|
20.8
|
1.0
|
|
HA
|
A:CYS20
|
3.4
|
24.4
|
1.0
|
|
SG
|
A:CYS24
|
3.5
|
21.7
|
1.0
|
|
HE1
|
A:PHE25
|
3.5
|
25.1
|
1.0
|
|
HG23
|
A:VAL22
|
3.8
|
31.9
|
1.0
|
|
CA
|
A:CYS20
|
3.9
|
20.4
|
1.0
|
|
S4
|
A:SF4107
|
3.9
|
20.4
|
1.0
|
|
CE1
|
A:PHE25
|
4.1
|
20.9
|
1.0
|
|
HB3
|
A:CYS20
|
4.2
|
24.9
|
1.0
|
|
HG21
|
A:VAL22
|
4.3
|
31.9
|
1.0
|
|
CD
|
A:PRO21
|
4.3
|
21.4
|
1.0
|
|
H
|
A:CYS24
|
4.3
|
24.0
|
1.0
|
|
H
|
A:VAL22
|
4.4
|
25.3
|
1.0
|
|
HA
|
A:CYS39
|
4.4
|
25.4
|
1.0
|
|
CG2
|
A:VAL22
|
4.5
|
21.3
|
1.0
|
|
HB3
|
A:CYS45
|
4.5
|
25.3
|
1.0
|
|
HD1
|
A:PHE25
|
4.6
|
26.0
|
1.0
|
|
SG
|
A:CYS42
|
4.6
|
21.8
|
1.0
|
|
C
|
A:CYS20
|
4.6
|
20.9
|
1.0
|
|
HD3
|
A:PRO21
|
4.7
|
25.7
|
1.0
|
|
N
|
A:PRO21
|
4.7
|
21.0
|
1.0
|
|
CD1
|
A:PHE25
|
4.7
|
21.7
|
1.0
|
|
H
|
A:ILE40
|
4.8
|
24.1
|
1.0
|
|
HG22
|
A:VAL22
|
4.8
|
31.9
|
1.0
|
|
HZ
|
A:PHE25
|
4.8
|
24.5
|
1.0
|
|
SG
|
A:CYS45
|
4.8
|
20.2
|
1.0
|
|
CZ
|
A:PHE25
|
4.9
|
20.4
|
1.0
|
|
SG
|
A:CYS39
|
4.9
|
20.4
|
1.0
|
|
Iron binding site 5 out
of 7 in 6fd1
Go back to
Iron Binding Sites List in 6fd1
Iron binding site 5 out
of 7 in the 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe108
b:19.1
occ:1.00
|
FE1
|
A:F3S108
|
0.0
|
19.1
|
1.0
|
|
S2
|
A:F3S108
|
2.3
|
22.0
|
1.0
|
|
S1
|
A:F3S108
|
2.3
|
20.1
|
1.0
|
|
SG
|
A:CYS16
|
2.3
|
20.6
|
1.0
|
|
S3
|
A:F3S108
|
2.3
|
19.9
|
1.0
|
|
FE4
|
A:F3S108
|
2.6
|
19.1
|
1.0
|
|
FE3
|
A:F3S108
|
2.7
|
18.5
|
1.0
|
|
HB3
|
A:CYS16
|
3.1
|
27.1
|
1.0
|
|
HA
|
A:THR14
|
3.2
|
27.0
|
1.0
|
|
H
|
A:CYS16
|
3.3
|
27.9
|
1.0
|
|
H
|
A:THR14
|
3.3
|
26.4
|
1.0
|
|
CB
|
A:CYS16
|
3.3
|
22.6
|
1.0
|
|
HD23
|
A:LEU32
|
3.6
|
30.8
|
1.0
|
|
HD13
|
A:ILE54
|
3.8
|
29.4
|
1.0
|
|
S4
|
A:F3S108
|
3.8
|
20.6
|
1.0
|
|
N
|
A:THR14
|
3.9
|
22.0
|
1.0
|
|
HB2
|
A:CYS16
|
4.0
|
27.1
|
1.0
|
|
CA
|
A:THR14
|
4.0
|
22.5
|
1.0
|
|
N
|
A:CYS16
|
4.0
|
23.2
|
1.0
|
|
HB2
|
A:LEU32
|
4.2
|
25.1
|
1.0
|
|
CA
|
A:CYS16
|
4.3
|
22.2
|
1.0
|
|
H
|
A:ASP15
|
4.3
|
28.2
|
1.0
|
|
C
|
A:THR14
|
4.4
|
22.4
|
1.0
|
|
CD2
|
A:LEU32
|
4.5
|
20.5
|
1.0
|
|
HB2
|
A:CYS49
|
4.5
|
27.2
|
1.0
|
|
HD21
|
A:LEU32
|
4.5
|
30.8
|
1.0
|
|
N
|
A:ASP15
|
4.5
|
23.5
|
1.0
|
|
HB2
|
A:TYR13
|
4.5
|
27.2
|
1.0
|
|
H
|
A:TYR13
|
4.5
|
25.0
|
1.0
|
|
HE2
|
A:PHE25
|
4.6
|
22.6
|
1.0
|
|
SG
|
A:CYS49
|
4.7
|
20.6
|
1.0
|
|
HA
|
A:CYS49
|
4.7
|
25.4
|
1.0
|
|
HA
|
A:LYS12
|
4.7
|
26.0
|
1.0
|
|
CD1
|
A:ILE54
|
4.7
|
19.6
|
1.0
|
|
H
|
A:VAL17
|
4.8
|
26.4
|
1.0
|
|
SG
|
A:CYS8
|
4.8
|
19.7
|
1.0
|
|
HD11
|
A:ILE54
|
4.9
|
29.4
|
1.0
|
|
N
|
A:TYR13
|
4.9
|
20.9
|
1.0
|
|
HB3
|
A:LEU32
|
4.9
|
25.1
|
1.0
|
|
HG12
|
A:VAL17
|
4.9
|
35.3
|
1.0
|
|
HG21
|
A:THR14
|
5.0
|
36.7
|
1.0
|
|
CB
|
A:LEU32
|
5.0
|
20.9
|
1.0
|
|
HA
|
A:CYS16
|
5.0
|
26.7
|
1.0
|
|
HG13
|
A:ILE54
|
5.0
|
24.1
|
1.0
|
|
Iron binding site 6 out
of 7 in 6fd1
Go back to
Iron Binding Sites List in 6fd1
Iron binding site 6 out
of 7 in the 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe108
b:18.5
occ:1.00
|
FE3
|
A:F3S108
|
0.0
|
18.5
|
1.0
|
|
S4
|
A:F3S108
|
2.2
|
20.6
|
1.0
|
|
S1
|
A:F3S108
|
2.2
|
20.1
|
1.0
|
|
S3
|
A:F3S108
|
2.3
|
19.9
|
1.0
|
|
SG
|
A:CYS8
|
2.3
|
19.7
|
1.0
|
|
FE4
|
A:F3S108
|
2.7
|
19.1
|
1.0
|
|
FE1
|
A:F3S108
|
2.7
|
19.1
|
1.0
|
|
HB2
|
A:CYS8
|
2.9
|
24.6
|
1.0
|
|
HA
|
A:LYS12
|
3.0
|
26.0
|
1.0
|
|
CB
|
A:CYS8
|
3.2
|
20.5
|
1.0
|
|
HA
|
A:CYS8
|
3.6
|
23.3
|
1.0
|
|
H
|
A:TYR13
|
3.7
|
25.0
|
1.0
|
|
HB2
|
A:LEU32
|
3.8
|
25.1
|
1.0
|
|
HG12
|
A:VAL4
|
3.9
|
28.8
|
1.0
|
|
H
|
A:LYS12
|
3.9
|
25.6
|
1.0
|
|
CA
|
A:LYS12
|
3.9
|
21.7
|
1.0
|
|
HB3
|
A:CYS8
|
3.9
|
24.6
|
1.0
|
|
CA
|
A:CYS8
|
4.0
|
19.4
|
1.0
|
|
S2
|
A:F3S108
|
4.0
|
22.0
|
1.0
|
|
H
|
A:THR14
|
4.0
|
26.4
|
1.0
|
|
HG11
|
A:VAL4
|
4.1
|
28.8
|
1.0
|
|
N
|
A:TYR13
|
4.3
|
20.9
|
1.0
|
|
N
|
A:LYS12
|
4.3
|
21.4
|
1.0
|
|
H
|
A:LEU32
|
4.3
|
22.0
|
1.0
|
|
CG1
|
A:VAL4
|
4.5
|
19.2
|
1.0
|
|
HB2
|
A:ALA53
|
4.5
|
29.9
|
1.0
|
|
C
|
A:LYS12
|
4.5
|
21.9
|
1.0
|
|
HD23
|
A:LEU32
|
4.6
|
30.8
|
1.0
|
|
O
|
A:CYS8
|
4.6
|
19.7
|
1.0
|
|
HG3
|
A:LYS12
|
4.7
|
25.0
|
1.0
|
|
SG
|
A:CYS49
|
4.7
|
20.6
|
1.0
|
|
CB
|
A:LEU32
|
4.7
|
20.9
|
1.0
|
|
C
|
A:CYS8
|
4.7
|
19.1
|
1.0
|
|
HD2
|
A:TYR13
|
4.8
|
27.4
|
1.0
|
|
HB2
|
A:TYR13
|
4.8
|
27.2
|
1.0
|
|
SG
|
A:CYS16
|
4.8
|
20.6
|
1.0
|
|
HG13
|
A:VAL4
|
4.9
|
28.8
|
1.0
|
|
HD12
|
A:LEU32
|
4.9
|
37.8
|
1.0
|
|
N
|
A:THR14
|
4.9
|
22.0
|
1.0
|
|
HB2
|
A:ALA51
|
4.9
|
34.2
|
1.0
|
|
HA
|
A:THR14
|
4.9
|
27.0
|
1.0
|
|
N
|
A:LEU32
|
5.0
|
18.3
|
1.0
|
|
CB
|
A:LYS12
|
5.0
|
20.7
|
1.0
|
|
HB3
|
A:LEU32
|
5.0
|
25.1
|
1.0
|
|
Iron binding site 7 out
of 7 in 6fd1
Go back to
Iron Binding Sites List in 6fd1
Iron binding site 7 out
of 7 in the 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of 7-Fe Ferredoxin From Azotobacter Vinelandii Low Temperature, 1.35 A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe108
b:19.1
occ:1.00
|
FE4
|
A:F3S108
|
0.0
|
19.1
|
1.0
|
|
S4
|
A:F3S108
|
2.2
|
20.6
|
1.0
|
|
S2
|
A:F3S108
|
2.3
|
22.0
|
1.0
|
|
SG
|
A:CYS49
|
2.3
|
20.6
|
1.0
|
|
S3
|
A:F3S108
|
2.3
|
19.9
|
1.0
|
|
FE1
|
A:F3S108
|
2.6
|
19.1
|
1.0
|
|
FE3
|
A:F3S108
|
2.7
|
18.5
|
1.0
|
|
HB2
|
A:CYS49
|
3.3
|
27.2
|
1.0
|
|
CB
|
A:CYS49
|
3.3
|
22.6
|
1.0
|
|
HA
|
A:CYS49
|
3.5
|
25.4
|
1.0
|
|
HB2
|
A:ALA51
|
3.7
|
34.2
|
1.0
|
|
HD2
|
A:PRO50
|
3.7
|
28.2
|
1.0
|
|
HD2
|
A:TYR13
|
3.7
|
27.4
|
1.0
|
|
HB2
|
A:TYR13
|
3.8
|
27.2
|
1.0
|
|
S1
|
A:F3S108
|
3.8
|
20.1
|
1.0
|
|
H
|
A:ALA51
|
3.9
|
26.1
|
1.0
|
|
CA
|
A:CYS49
|
3.9
|
21.2
|
1.0
|
|
HB2
|
A:ALA53
|
3.9
|
29.9
|
1.0
|
|
H
|
A:TYR13
|
4.1
|
25.0
|
1.0
|
|
HB2
|
A:CYS8
|
4.2
|
24.6
|
1.0
|
|
HB3
|
A:CYS49
|
4.2
|
27.2
|
1.0
|
|
HB3
|
A:CYS16
|
4.2
|
27.1
|
1.0
|
|
HG13
|
A:ILE54
|
4.3
|
24.1
|
1.0
|
|
H
|
A:THR14
|
4.3
|
26.4
|
1.0
|
|
HD13
|
A:ILE54
|
4.4
|
29.4
|
1.0
|
|
CD
|
A:PRO50
|
4.4
|
23.5
|
1.0
|
|
H
|
A:ALA53
|
4.5
|
24.0
|
1.0
|
|
C
|
A:CYS49
|
4.5
|
21.0
|
1.0
|
|
CB
|
A:ALA51
|
4.5
|
22.8
|
1.0
|
|
HB1
|
A:ALA51
|
4.6
|
34.2
|
1.0
|
|
HA
|
A:CYS8
|
4.6
|
23.3
|
1.0
|
|
HD3
|
A:PRO50
|
4.6
|
28.2
|
1.0
|
|
CD2
|
A:TYR13
|
4.6
|
22.8
|
1.0
|
|
N
|
A:PRO50
|
4.6
|
22.0
|
1.0
|
|
N
|
A:ALA51
|
4.7
|
21.8
|
1.0
|
|
H
|
A:CYS16
|
4.7
|
27.9
|
1.0
|
|
SG
|
A:CYS16
|
4.7
|
20.6
|
1.0
|
|
SG
|
A:CYS8
|
4.7
|
19.7
|
1.0
|
|
CB
|
A:TYR13
|
4.7
|
22.6
|
1.0
|
|
N
|
A:TYR13
|
4.8
|
20.9
|
1.0
|
|
HB1
|
A:ALA53
|
4.8
|
29.9
|
1.0
|
|
CB
|
A:ALA53
|
4.8
|
19.9
|
1.0
|
|
CB
|
A:CYS8
|
4.8
|
20.5
|
1.0
|
|
HD11
|
A:ILE54
|
4.9
|
29.4
|
1.0
|
|
HA
|
A:LYS12
|
4.9
|
26.0
|
1.0
|
|
CB
|
A:CYS16
|
5.0
|
22.6
|
1.0
|
|
CD1
|
A:ILE54
|
5.0
|
19.6
|
1.0
|
|
HG11
|
A:VAL4
|
5.0
|
28.8
|
1.0
|
|
Reference:
C.D.Stout,
E.A.Stura,
D.E.Mcree.
Structure of Azotobacter Vinelandii 7FE Ferredoxin at 1.35 A Resolution and Determination of the [Fe-S] Bonds with 0.01 A Accuracy. J.Mol.Biol. V. 278 629 1998.
ISSN: ISSN 0022-2836
PubMed: 9600844
DOI: 10.1006/JMBI.1998.1732
Page generated: Wed Aug 6 06:02:31 2025
|
