Iron in PDB 6giq: Saccharomyces Cerevisiae Respiratory Supercomplex III2IV

All present enzymatic activity of Saccharomyces Cerevisiae Respiratory Supercomplex III2IV:
1.10.2.2; 1.9.3.1;

The structure of Saccharomyces Cerevisiae Respiratory Supercomplex III2IV also contains other interesting chemical elements:

Copper

(Cu)

3 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Saccharomyces Cerevisiae Respiratory Supercomplex III2IV (pdb code 6giq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Saccharomyces Cerevisiae Respiratory Supercomplex III2IV, PDB code: 6giq:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Saccharomyces Cerevisiae Respiratory Supercomplex III2IV


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Saccharomyces Cerevisiae Respiratory Supercomplex III2IV within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe402 b:51.2 occ:1.00 FE C:HEM402 0.0 51.2 1.0 NB C:HEM402 1.9 51.2 1.0 NA C:HEM402 1.9 51.2 1.0 NC C:HEM402 2.1 51.2 1.0 ND C:HEM402 2.1 51.2 1.0 NE2 C:HIS82 2.6 51.7 1.0 NE2 C:HIS183 2.7 48.5 1.0 C4B C:HEM402 2.9 51.2 1.0 C1B C:HEM402 2.9 51.2 1.0 CE1 C:HIS183 2.9 48.5 1.0 C4A C:HEM402 2.9 51.2 1.0 C1A C:HEM402 3.0 51.2 1.0 C1C C:HEM402 3.0 51.2 1.0 C4D C:HEM402 3.1 51.2 1.0 C4C C:HEM402 3.2 51.2 1.0 C1D C:HEM402 3.2 51.2 1.0 CHB C:HEM402 3.3 51.2 1.0 CHC C:HEM402 3.3 51.2 1.0 CHA C:HEM402 3.4 51.2 1.0 CE1 C:HIS82 3.5 51.7 1.0 CHD C:HEM402 3.6 51.2 1.0 CD2 C:HIS82 3.6 51.7 1.0 CD2 C:HIS183 4.0 48.5 1.0 C3B C:HEM402 4.1 51.2 1.0 C2B C:HEM402 4.1 51.2 1.0 C3A C:HEM402 4.2 51.2 1.0 C2A C:HEM402 4.2 51.2 1.0 ND1 C:HIS183 4.2 48.5 1.0 C2C C:HEM402 4.3 51.2 1.0 C3C C:HEM402 4.3 51.2 1.0 C3D C:HEM402 4.4 51.2 1.0 C2D C:HEM402 4.4 51.2 1.0 OE1 C:GLN43 4.5 51.4 1.0 ND1 C:HIS82 4.6 51.7 1.0 CG C:HIS82 4.7 51.7 1.0 CG C:HIS183 4.8 48.5 1.0 CA C:GLY131 4.8 53.2 1.0

Iron binding site 2 out of 12 in the Saccharomyces Cerevisiae Respiratory Supercomplex III2IV


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Saccharomyces Cerevisiae Respiratory Supercomplex III2IV within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe403 b:52.0 occ:1.00 FE C:HEM403 0.0 52.0 1.0 ND C:HEM403 1.8 52.0 1.0 NA C:HEM403 1.9 52.0 1.0 NC C:HEM403 2.1 52.0 1.0 NB C:HEM403 2.1 52.0 1.0 NE2 C:HIS197 2.5 50.5 1.0 NE2 C:HIS96 2.7 52.3 1.0 C4D C:HEM403 2.8 52.0 1.0 C1D C:HEM403 2.8 52.0 1.0 C1A C:HEM403 2.9 52.0 1.0 C4A C:HEM403 3.0 52.0 1.0 C4C C:HEM403 3.0 52.0 1.0 C1B C:HEM403 3.0 52.0 1.0 C4B C:HEM403 3.1 52.0 1.0 C1C C:HEM403 3.1 52.0 1.0 CHA C:HEM403 3.3 52.0 1.0 CD2 C:HIS197 3.3 50.5 1.0 CE1 C:HIS197 3.3 50.5 1.0 CHD C:HEM403 3.3 52.0 1.0 CD2 C:HIS96 3.4 52.3 1.0 CHB C:HEM403 3.4 52.0 1.0 CHC C:HEM403 3.5 52.0 1.0 CE1 C:HIS96 3.7 52.3 1.0 C2D C:HEM403 4.1 52.0 1.0 C3D C:HEM403 4.1 52.0 1.0 C2A C:HEM403 4.1 52.0 1.0 C3A C:HEM403 4.1 52.0 1.0 C3C C:HEM403 4.2 52.0 1.0 C2C C:HEM403 4.2 52.0 1.0 C2B C:HEM403 4.2 52.0 1.0 C3B C:HEM403 4.3 52.0 1.0 ND1 C:HIS197 4.3 50.5 1.0 CG C:HIS197 4.3 50.5 1.0 CG C:HIS96 4.5 52.3 1.0 ND1 C:HIS96 4.7 52.3 1.0

Iron binding site 3 out of 12 in the Saccharomyces Cerevisiae Respiratory Supercomplex III2IV


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Saccharomyces Cerevisiae Respiratory Supercomplex III2IV within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe401 b:64.8 occ:1.00 FE D:HEM401 0.0 64.8 1.0 ND D:HEM401 1.9 64.8 1.0 NA D:HEM401 2.0 64.8 1.0 NC D:HEM401 2.0 64.8 1.0 NE2 D:HIS105 2.1 61.2 1.0 NB D:HEM401 2.1 64.8 1.0 C4D D:HEM401 2.8 64.8 1.0 C1D D:HEM401 2.9 64.8 1.0 C1A D:HEM401 2.9 64.8 1.0 C4C D:HEM401 3.0 64.8 1.0 CE1 D:HIS105 3.0 61.2 1.0 C4A D:HEM401 3.0 64.8 1.0 C4B D:HEM401 3.1 64.8 1.0 C1C D:HEM401 3.1 64.8 1.0 C1B D:HEM401 3.1 64.8 1.0 CD2 D:HIS105 3.1 61.2 1.0 CHA D:HEM401 3.3 64.8 1.0 CHD D:HEM401 3.3 64.8 1.0 CHC D:HEM401 3.5 64.8 1.0 CHB D:HEM401 3.5 64.8 1.0 CG D:MET225 3.7 68.7 1.0 SD D:MET225 3.8 68.7 1.0 CE D:MET225 3.8 68.7 1.0 C3D D:HEM401 4.1 64.8 1.0 ND1 D:HIS105 4.1 61.2 1.0 C2D D:HEM401 4.1 64.8 1.0 C2A D:HEM401 4.2 64.8 1.0 C3C D:HEM401 4.2 64.8 1.0 C3A D:HEM401 4.2 64.8 1.0 CG D:HIS105 4.2 61.2 1.0 C2C D:HEM401 4.2 64.8 1.0 C2B D:HEM401 4.3 64.8 1.0 C3B D:HEM401 4.3 64.8 1.0 CB D:MET225 4.8 68.7 1.0

Iron binding site 4 out of 12 in the Saccharomyces Cerevisiae Respiratory Supercomplex III2IV


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Saccharomyces Cerevisiae Respiratory Supercomplex III2IV within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe301 b:0.6 occ:1.00 FE1 E:FES301 0.0 0.6 1.0 S2 E:FES301 2.2 0.6 1.0 S1 E:FES301 2.2 0.6 1.0 OG E:SER183 2.8 0.1 1.0 SG E:CYS159 3.0 0.9 1.0 FE2 E:FES301 3.1 0.6 1.0 CB E:SER183 3.3 0.1 1.0 SG E:CYS178 3.4 0.4 1.0 CB E:HIS161 3.7 0.1 1.0 OH E:TYR185 4.0 0.6 1.0 CB E:CYS178 4.0 0.4 1.0 ND1 E:HIS161 4.3 0.1 1.0 CB E:ALA196 4.4 0.3 1.0 CB E:CYS159 4.4 0.9 1.0 CG E:HIS161 4.5 0.1 1.0 CA E:SER183 4.6 0.1 1.0 N E:HIS161 4.7 0.1 1.0 CA E:HIS161 4.8 0.1 1.0 N E:SER183 4.8 0.1 1.0 CZ E:TYR185 4.8 0.6 1.0 N E:LEU162 4.8 0.4 1.0 CA E:ALA196 5.0 0.3 1.0

Iron binding site 5 out of 12 in the Saccharomyces Cerevisiae Respiratory Supercomplex III2IV


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Saccharomyces Cerevisiae Respiratory Supercomplex III2IV within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe301 b:0.6 occ:1.00 FE2 E:FES301 0.0 0.6 1.0 S2 E:FES301 2.2 0.6 1.0 S1 E:FES301 2.2 0.6 1.0 ND1 E:HIS181 2.9 0.8 1.0 FE1 E:FES301 3.1 0.6 1.0 ND1 E:HIS161 3.2 0.1 1.0 CB E:CYS180 3.4 0.3 1.0 CB E:HIS181 3.6 0.8 1.0 CG E:HIS181 3.6 0.8 1.0 N E:HIS181 3.7 0.8 1.0 CD1 E:LEU162 3.8 0.4 1.0 CE1 E:HIS181 3.9 0.8 1.0 CE1 E:HIS161 3.9 0.1 1.0 CG E:HIS161 4.0 0.1 1.0 CG E:LEU162 4.1 0.4 1.0 SG E:CYS178 4.1 0.4 1.0 CB E:HIS161 4.1 0.1 1.0 CB E:LEU162 4.2 0.4 1.0 CA E:HIS181 4.3 0.8 1.0 C E:CYS180 4.3 0.3 1.0 SG E:CYS164 4.3 0.6 1.0 CA E:CYS180 4.4 0.3 1.0 N E:LEU162 4.6 0.4 1.0 SG E:CYS180 4.7 0.3 1.0 OG E:SER183 4.7 0.1 1.0 CD2 E:HIS181 4.9 0.8 1.0 NE2 E:HIS161 4.9 0.1 1.0 NE2 E:HIS181 5.0 0.8 1.0 CD2 E:HIS161 5.0 0.1 1.0

Iron binding site 6 out of 12 in the Saccharomyces Cerevisiae Respiratory Supercomplex III2IV


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Saccharomyces Cerevisiae Respiratory Supercomplex III2IV within 5.0Å range: probe atom residue distance (Å) B Occ N:Fe403 b:50.8 occ:1.00 FE N:HEM403 0.0 50.8 1.0 NB N:HEM403 1.9 50.8 1.0 NA N:HEM403 1.9 50.8 1.0 NC N:HEM403 2.1 50.8 1.0 ND N:HEM403 2.1 50.8 1.0 NE2 N:HIS82 2.6 50.0 1.0 NE2 N:HIS183 2.7 47.7 1.0 C4B N:HEM403 2.9 50.8 1.0 C1B N:HEM403 2.9 50.8 1.0 CE1 N:HIS183 2.9 47.7 1.0 C4A N:HEM403 2.9 50.8 1.0 C1A N:HEM403 3.0 50.8 1.0 C1C N:HEM403 3.0 50.8 1.0 C4D N:HEM403 3.1 50.8 1.0 C4C N:HEM403 3.2 50.8 1.0 C1D N:HEM403 3.2 50.8 1.0 CHB N:HEM403 3.3 50.8 1.0 CHC N:HEM403 3.3 50.8 1.0 CHA N:HEM403 3.4 50.8 1.0 CE1 N:HIS82 3.5 50.0 1.0 CHD N:HEM403 3.6 50.8 1.0 CD2 N:HIS82 3.6 50.0 1.0 CD2 N:HIS183 4.0 47.7 1.0 C3B N:HEM403 4.1 50.8 1.0 C2B N:HEM403 4.1 50.8 1.0 C3A N:HEM403 4.2 50.8 1.0 C2A N:HEM403 4.2 50.8 1.0 ND1 N:HIS183 4.2 47.7 1.0 C2C N:HEM403 4.3 50.8 1.0 C3C N:HEM403 4.3 50.8 1.0 C3D N:HEM403 4.4 50.8 1.0 C2D N:HEM403 4.4 50.8 1.0 OE1 N:GLN43 4.5 50.7 1.0 ND1 N:HIS82 4.6 50.0 1.0 CG N:HIS82 4.7 50.0 1.0 CG N:HIS183 4.8 47.7 1.0 CA N:GLY131 4.8 52.4 1.0

Iron binding site 7 out of 12 in the Saccharomyces Cerevisiae Respiratory Supercomplex III2IV


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Saccharomyces Cerevisiae Respiratory Supercomplex III2IV within 5.0Å range: probe atom residue distance (Å) B Occ N:Fe404 b:51.9 occ:1.00 FE N:HEM404 0.0 51.9 1.0 ND N:HEM404 1.9 51.9 1.0 NA N:HEM404 2.0 51.9 1.0 NC N:HEM404 2.1 51.9 1.0 NB N:HEM404 2.1 51.9 1.0 NE2 N:HIS197 2.5 52.0 1.0 NE2 N:HIS96 2.7 51.2 1.0 C1D N:HEM404 2.9 51.9 1.0 C4D N:HEM404 2.9 51.9 1.0 C1A N:HEM404 3.0 51.9 1.0 C4C N:HEM404 3.0 51.9 1.0 C4A N:HEM404 3.0 51.9 1.0 C4B N:HEM404 3.1 51.9 1.0 C1B N:HEM404 3.1 51.9 1.0 C1C N:HEM404 3.1 51.9 1.0 CD2 N:HIS197 3.3 52.0 1.0 CHA N:HEM404 3.3 51.9 1.0 CHD N:HEM404 3.4 51.9 1.0 CD2 N:HIS96 3.4 51.2 1.0 CE1 N:HIS197 3.4 52.0 1.0 CHB N:HEM404 3.5 51.9 1.0 CHC N:HEM404 3.5 51.9 1.0 CE1 N:HIS96 3.7 51.2 1.0 C2D N:HEM404 4.1 51.9 1.0 C3D N:HEM404 4.1 51.9 1.0 C2A N:HEM404 4.2 51.9 1.0 C3A N:HEM404 4.2 51.9 1.0 C3C N:HEM404 4.2 51.9 1.0 C2C N:HEM404 4.3 51.9 1.0 C2B N:HEM404 4.3 51.9 1.0 CG N:HIS197 4.3 52.0 1.0 C3B N:HEM404 4.4 51.9 1.0 ND1 N:HIS197 4.4 52.0 1.0 CG N:HIS96 4.5 51.2 1.0 ND1 N:HIS96 4.6 51.2 1.0

Iron binding site 8 out of 12 in the Saccharomyces Cerevisiae Respiratory Supercomplex III2IV


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Saccharomyces Cerevisiae Respiratory Supercomplex III2IV within 5.0Å range: probe atom residue distance (Å) B Occ O:Fe401 b:63.4 occ:1.00 FE O:HEM401 0.0 63.4 1.0 ND O:HEM401 1.8 63.4 1.0 NA O:HEM401 2.0 63.4 1.0 NC O:HEM401 2.1 63.4 1.0 NB O:HEM401 2.1 63.4 1.0 NE2 O:HIS105 2.3 60.1 1.0 C4D O:HEM401 2.8 63.4 1.0 C1D O:HEM401 2.8 63.4 1.0 C1A O:HEM401 2.9 63.4 1.0 C4C O:HEM401 3.0 63.4 1.0 C4A O:HEM401 3.0 63.4 1.0 C1B O:HEM401 3.0 63.4 1.0 C4B O:HEM401 3.0 63.4 1.0 C1C O:HEM401 3.1 63.4 1.0 CE1 O:HIS105 3.1 60.1 1.0 CHA O:HEM401 3.3 63.4 1.0 CD2 O:HIS105 3.3 60.1 1.0 CHD O:HEM401 3.3 63.4 1.0 CHB O:HEM401 3.5 63.4 1.0 CHC O:HEM401 3.5 63.4 1.0 CG O:MET225 3.6 68.3 1.0 CE O:MET225 3.6 68.3 1.0 SD O:MET225 3.6 68.3 1.0 C3D O:HEM401 4.1 63.4 1.0 C2D O:HEM401 4.1 63.4 1.0 C2A O:HEM401 4.1 63.4 1.0 C3A O:HEM401 4.2 63.4 1.0 C3C O:HEM401 4.2 63.4 1.0 C2C O:HEM401 4.2 63.4 1.0 C2B O:HEM401 4.3 63.4 1.0 ND1 O:HIS105 4.3 60.1 1.0 C3B O:HEM401 4.3 63.4 1.0 CG O:HIS105 4.4 60.1 1.0 CB O:MET225 4.7 68.3 1.0

Iron binding site 9 out of 12 in the Saccharomyces Cerevisiae Respiratory Supercomplex III2IV


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Saccharomyces Cerevisiae Respiratory Supercomplex III2IV within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe302 b:0.2 occ:1.00 FE1 P:FES302 0.0 0.2 1.0 S2 P:FES302 2.2 0.2 1.0 S1 P:FES302 2.2 0.2 1.0 OG P:SER183 2.8 0.2 1.0 SG P:CYS159 3.0 0.7 1.0 FE2 P:FES302 3.1 0.2 1.0 CB P:SER183 3.3 0.2 1.0 SG P:CYS178 3.4 0.6 1.0 CB P:HIS161 3.7 0.8 1.0 OH P:TYR185 4.0 0.8 1.0 CB P:CYS178 4.0 0.6 1.0 ND1 P:HIS161 4.3 0.8 1.0 CB P:ALA196 4.4 0.1 1.0 CB P:CYS159 4.4 0.7 1.0 CG P:HIS161 4.5 0.8 1.0 CA P:SER183 4.6 0.2 1.0 N P:HIS161 4.7 0.8 1.0 CA P:HIS161 4.8 0.8 1.0 N P:SER183 4.8 0.2 1.0 CZ P:TYR185 4.8 0.8 1.0 N P:LEU162 4.8 0.8 1.0 CA P:ALA196 5.0 0.1 1.0

Iron binding site 10 out of 12 in the Saccharomyces Cerevisiae Respiratory Supercomplex III2IV


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Saccharomyces Cerevisiae Respiratory Supercomplex III2IV within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe302 b:0.2 occ:1.00 FE2 P:FES302 0.0 0.2 1.0 S1 P:FES302 2.2 0.2 1.0 S2 P:FES302 2.2 0.2 1.0 ND1 P:HIS181 2.9 0.5 1.0 FE1 P:FES302 3.1 0.2 1.0 ND1 P:HIS161 3.2 0.8 1.0 CB P:CYS180 3.4 0.2 1.0 CB P:HIS181 3.6 0.5 1.0 CG P:HIS181 3.6 0.5 1.0 N P:HIS181 3.7 0.5 1.0 CD1 P:LEU162 3.8 0.8 1.0 CE1 P:HIS181 3.9 0.5 1.0 CE1 P:HIS161 3.9 0.8 1.0 CG P:HIS161 4.0 0.8 1.0 CG P:LEU162 4.1 0.8 1.0 SG P:CYS178 4.1 0.6 1.0 CB P:HIS161 4.1 0.8 1.0 CB P:LEU162 4.2 0.8 1.0 CA P:HIS181 4.3 0.5 1.0 C P:CYS180 4.3 0.2 1.0 SG P:CYS164 4.3 0.6 1.0 CA P:CYS180 4.4 0.2 1.0 N P:LEU162 4.6 0.8 1.0 SG P:CYS180 4.7 0.2 1.0 OG P:SER183 4.7 0.2 1.0 CD2 P:HIS181 4.9 0.5 1.0 NE2 P:HIS161 4.9 0.8 1.0 NE2 P:HIS181 5.0 0.5 1.0 CD2 P:HIS161 5.0 0.8 1.0

S.Rathore, J.Berndtsson, L.Marin-Buera, J.Conrad, M.Carroni, P.Brzezinski, M.Ott. Cryo-Em Structure of the Yeast Respiratory Supercomplex. Nat. Struct. Mol. Biol. V. 26 50 2019.
ISSN: ESSN 1545-9985
PubMed: 30598556
DOI: 10.1038/S41594-018-0169-7