Iron in PDB 6gk5: Crystal Structure of Cytochrome P450 CYP267B1 From Sorangium Cellulosum So CE56

Protein crystallography data

The structure of Crystal Structure of Cytochrome P450 CYP267B1 From Sorangium Cellulosum So CE56, PDB code: 6gk5 was solved by I.K.Jozwik, A.M.W.H.Thunnissen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.00 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.501, 66.390, 104.304, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 20.8

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Cytochrome P450 CYP267B1 From Sorangium Cellulosum So CE56 (pdb code 6gk5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Cytochrome P450 CYP267B1 From Sorangium Cellulosum So CE56, PDB code: 6gk5:

Iron binding site 1 out of 1 in 6gk5

Go back to Iron Binding Sites List in 6gk5
Iron binding site 1 out of 1 in the Crystal Structure of Cytochrome P450 CYP267B1 From Sorangium Cellulosum So CE56


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cytochrome P450 CYP267B1 From Sorangium Cellulosum So CE56 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:17.5
occ:1.00
FE A:HEM501 0.0 17.5 1.0
NB A:HEM501 2.0 18.9 1.0
NC A:HEM501 2.0 19.3 1.0
ND A:HEM501 2.0 13.9 1.0
NA A:HEM501 2.1 17.0 1.0
SG A:CYS354 2.4 18.8 1.0
O A:HOH716 2.4 30.2 1.0
C1D A:HEM501 3.0 18.6 1.0
C4B A:HEM501 3.0 20.4 1.0
C1C A:HEM501 3.0 20.8 1.0
C1B A:HEM501 3.1 19.4 1.0
C4C A:HEM501 3.1 19.4 1.0
C4D A:HEM501 3.1 17.4 1.0
C4A A:HEM501 3.1 16.6 1.0
C1A A:HEM501 3.1 15.8 1.0
CB A:CYS354 3.4 16.7 1.0
CHC A:HEM501 3.4 20.3 1.0
CHD A:HEM501 3.4 18.9 1.0
CHB A:HEM501 3.4 16.9 1.0
CHA A:HEM501 3.5 16.0 1.0
CA A:CYS354 4.0 17.1 1.0
C2D A:HEM501 4.2 16.2 1.0
C3B A:HEM501 4.2 19.7 1.0
C2C A:HEM501 4.2 21.9 1.0
C3D A:HEM501 4.2 17.6 1.0
C2B A:HEM501 4.3 18.3 1.0
C3C A:HEM501 4.3 21.2 1.0
C3A A:HEM501 4.3 16.7 1.0
C2A A:HEM501 4.3 15.8 1.0
CG2 A:THR247 4.5 30.8 1.0
C A:CYS354 4.7 17.5 1.0
N A:GLY356 4.7 18.7 1.0
N A:LEU355 4.7 15.1 1.0
CB A:ALA243 4.8 27.1 1.0
O A:ALA243 5.0 29.3 1.0

Reference:

I.K.Jozwik, M.Litzenburger, Y.Khatri, A.Schifrin, M.Girhard, V.Urlacher, A.W.H.Thunnissen, R.Bernhardt. Structural Insights Into Oxidation of Medium-Chain Fatty Acids and Flavanone By Myxobacterial Cytochrome P450 CYP267B1. Biochem. J. V. 475 2801 2018.
ISSN: ESSN 1470-8728
PubMed: 30045877
DOI: 10.1042/BCJ20180402
Page generated: Sun Dec 13 16:27:40 2020

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