Iron in PDB 6l6j: Structure of 6-Hydroxypseudooxynicotine (6-Hpon) Amine Oxidase (Hisd) From Pseudomonas Geniculata N1

The structure of Structure of 6-Hydroxypseudooxynicotine (6-Hpon) Amine Oxidase (Hisd) From Pseudomonas Geniculata N1, PDB code: 6l6j was solved by G.Q.Liu, H.Z.Tang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.97 / 2.60
Space group	C 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	115.110, 212.902, 79.470, 90.00, 90.00, 90.00
R / Rfree (%)	17 / 20.6

The binding sites of Iron atom in the Structure of 6-Hydroxypseudooxynicotine (6-Hpon) Amine Oxidase (Hisd) From Pseudomonas Geniculata N1 (pdb code 6l6j). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Structure of 6-Hydroxypseudooxynicotine (6-Hpon) Amine Oxidase (Hisd) From Pseudomonas Geniculata N1, PDB code: 6l6j:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Structure of 6-Hydroxypseudooxynicotine (6-Hpon) Amine Oxidase (Hisd) From Pseudomonas Geniculata N1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of 6-Hydroxypseudooxynicotine (6-Hpon) Amine Oxidase (Hisd) From Pseudomonas Geniculata N1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe702 b:30.9 occ:1.00 FE1 A:SF4702 0.0 30.9 1.0 S2 A:SF4702 2.1 26.8 1.0 S4 A:SF4702 2.1 23.8 1.0 S3 A:SF4702 2.2 27.4 1.0 SG A:CYS347 2.2 25.7 1.0 FE3 A:SF4702 3.0 28.8 1.0 FE2 A:SF4702 3.0 28.5 1.0 FE4 A:SF4702 3.1 30.1 1.0 N A:CYS347 3.5 26.1 1.0 CB A:CYS347 3.7 25.8 1.0 S1 A:SF4702 3.7 22.1 1.0 N A:ASN348 3.9 25.4 1.0 OG1 A:THR363 4.0 27.4 1.0 CA A:CYS347 4.0 26.1 1.0 CG1 A:ILE345 4.1 27.2 1.0 CB A:THR363 4.3 28.4 1.0 N A:GLY346 4.3 21.8 1.0 C A:CYS347 4.3 25.6 1.0 N A:ALA349 4.4 24.8 1.0 N A:THR363 4.5 27.8 1.0 C A:GLY346 4.5 23.5 1.0 SG A:CYS344 4.7 24.8 1.0 N A:ILE345 4.7 23.8 1.0 CA A:GLY346 4.7 22.8 1.0 CA A:ASN348 4.7 25.8 1.0 SG A:CYS362 4.8 26.0 1.0 CD1 A:ILE345 4.8 27.3 1.0 SG A:CYS350 4.9 28.5 1.0 CB A:ALA349 4.9 24.4 1.0 C A:ILE345 4.9 22.3 1.0

Iron binding site 2 out of 4 in the Structure of 6-Hydroxypseudooxynicotine (6-Hpon) Amine Oxidase (Hisd) From Pseudomonas Geniculata N1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of 6-Hydroxypseudooxynicotine (6-Hpon) Amine Oxidase (Hisd) From Pseudomonas Geniculata N1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe702 b:28.5 occ:1.00 FE2 A:SF4702 0.0 28.5 1.0 S1 A:SF4702 2.1 22.1 1.0 S4 A:SF4702 2.1 23.8 1.0 S3 A:SF4702 2.1 27.4 1.0 SG A:CYS344 2.2 24.8 1.0 FE3 A:SF4702 3.0 28.8 1.0 FE4 A:SF4702 3.0 30.1 1.0 FE1 A:SF4702 3.0 30.9 1.0 CB A:CYS344 3.1 25.5 1.0 S2 A:SF4702 3.6 26.8 1.0 CA A:CYS344 3.7 25.2 1.0 N A:ILE345 3.9 23.8 1.0 CB A:ARG321 4.0 28.6 1.0 N A:GLY346 4.1 21.8 1.0 CG A:ARG321 4.2 30.4 1.0 C A:CYS344 4.2 24.5 1.0 O A:ARG321 4.4 25.4 1.0 CB A:ALA325 4.5 24.8 1.0 CD A:ARG321 4.5 29.7 1.0 C A:ARG321 4.6 25.3 1.0 CA A:GLY346 4.6 22.8 1.0 SG A:CYS362 4.7 26.0 1.0 CA A:ARG321 4.7 28.3 1.0 SG A:CYS350 4.9 28.5 1.0 N A:CYS344 5.0 25.6 1.0

Iron binding site 3 out of 4 in the Structure of 6-Hydroxypseudooxynicotine (6-Hpon) Amine Oxidase (Hisd) From Pseudomonas Geniculata N1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of 6-Hydroxypseudooxynicotine (6-Hpon) Amine Oxidase (Hisd) From Pseudomonas Geniculata N1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe702 b:28.8 occ:1.00 FE3 A:SF4702 0.0 28.8 1.0 SG A:CYS362 2.0 26.0 1.0 S4 A:SF4702 2.1 23.8 1.0 S2 A:SF4702 2.1 26.8 1.0 S1 A:SF4702 2.1 22.1 1.0 FE1 A:SF4702 3.0 30.9 1.0 FE2 A:SF4702 3.0 28.5 1.0 FE4 A:SF4702 3.0 30.1 1.0 CB A:CYS362 3.1 24.4 1.0 CA A:CYS362 3.5 24.8 1.0 N A:THR363 3.6 27.8 1.0 S3 A:SF4702 3.6 27.4 1.0 C A:CYS362 3.9 26.0 1.0 N A:GLN364 4.1 25.2 1.0 CG2 A:ILE324 4.3 20.4 1.0 CB A:ALA325 4.5 24.8 1.0 CB A:GLN364 4.6 26.4 1.0 CA A:THR363 4.7 29.0 1.0 CA A:ALA325 4.7 25.0 1.0 N A:ALA325 4.8 24.9 1.0 SG A:CYS347 4.8 25.7 1.0 CB A:THR363 4.8 28.4 1.0 N A:CYS362 4.9 23.3 1.0 SG A:CYS350 4.9 28.5 1.0 C A:THR363 4.9 29.0 1.0 OG1 A:THR363 5.0 27.4 1.0 O A:CYS362 5.0 27.3 1.0 CA A:GLN364 5.0 25.9 1.0

Iron binding site 4 out of 4 in the Structure of 6-Hydroxypseudooxynicotine (6-Hpon) Amine Oxidase (Hisd) From Pseudomonas Geniculata N1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of 6-Hydroxypseudooxynicotine (6-Hpon) Amine Oxidase (Hisd) From Pseudomonas Geniculata N1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe702 b:30.1 occ:1.00 FE4 A:SF4702 0.0 30.1 1.0 S1 A:SF4702 2.1 22.1 1.0 SG A:CYS350 2.1 28.5 1.0 S3 A:SF4702 2.1 27.4 1.0 S2 A:SF4702 2.1 26.8 1.0 FE2 A:SF4702 3.0 28.5 1.0 FE3 A:SF4702 3.0 28.8 1.0 FE1 A:SF4702 3.1 30.9 1.0 CB A:CYS350 3.1 26.9 1.0 S4 A:SF4702 3.7 23.8 1.0 N A:CYS350 3.8 28.0 1.0 CG A:ARG321 3.9 30.4 1.0 CA A:CYS350 4.1 27.6 1.0 CD A:ARG321 4.3 29.7 1.0 CA A:ASN348 4.5 25.8 1.0 N A:ASN348 4.5 25.4 1.0 N A:ALA349 4.6 24.8 1.0 CB A:ARG321 4.6 28.6 1.0 SG A:CYS347 4.7 25.7 1.0 CG2 A:ILE324 4.7 20.4 1.0 SG A:CYS362 4.8 26.0 1.0 C A:ASN348 4.8 26.6 1.0 SG A:CYS344 4.9 24.8 1.0 C A:ALA349 5.0 26.2 1.0

G.Q.Liu, H.Z.Tang. Structure of 6-Hydroxypseudooxynicotine (6-Hpon) Amine Oxidase (Hisd) From Pseudomonas Geniculata N1 Appl.Environ.Microbiol. 2020.
ISSN: ESSN 1098-5336