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Iron in PDB 6lbd: Shrimp Ferritin T158R G159R

Enzymatic activity of Shrimp Ferritin T158R G159R

All present enzymatic activity of Shrimp Ferritin T158R G159R:
1.16.3.1;

Protein crystallography data

The structure of Shrimp Ferritin T158R G159R, PDB code: 6lbd was solved by G.Zhao, H.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.76 / 1.39
Space group P 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 118.781, 118.781, 118.781, 90.00, 90.00, 90.00
R / Rfree (%) 13.8 / 14.8

Other elements in 6lbd:

The structure of Shrimp Ferritin T158R G159R also contains other interesting chemical elements:

Chlorine (Cl) 10 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Shrimp Ferritin T158R G159R (pdb code 6lbd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Shrimp Ferritin T158R G159R, PDB code: 6lbd:

Iron binding site 1 out of 1 in 6lbd

Go back to Iron Binding Sites List in 6lbd
Iron binding site 1 out of 1 in the Shrimp Ferritin T158R G159R


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Shrimp Ferritin T158R G159R within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe211

b:34.2
occ:0.38
HD2 A:HIS62 2.0 20.5 0.6
OE2 A:GLU24 2.2 24.7 0.5
OE1 A:GLU24 2.5 21.8 0.5
OE1 A:GLU59 2.6 24.2 1.0
CD A:GLU24 2.7 20.9 0.5
HG2 A:GLU24 2.7 14.7 0.5
CD2 A:HIS62 2.8 17.1 0.6
HG11 A:VAL107 3.1 14.9 1.0
CD A:GLU59 3.2 30.2 1.0
OE2 A:GLU59 3.3 43.7 1.0
OE1 A:GLN138 3.5 16.2 0.8
O A:HOH440 3.6 24.1 1.0
CG A:GLU24 3.6 12.2 0.5
O A:HOH443 3.6 30.6 1.0
HB2 A:HIS62 3.6 11.7 0.4
CG A:HIS62 3.6 13.1 0.6
HB2 A:HIS62 3.6 12.2 0.6
HB3 A:HIS62 3.6 12.2 0.6
CD A:GLU24 3.7 18.6 0.5
HB3 A:HIS62 3.7 11.7 0.4
OE1 A:GLU24 3.8 22.3 0.5
CB A:HIS62 3.8 10.2 0.6
NE2 A:HIS62 3.9 25.4 0.6
HA A:GLU59 3.9 12.9 1.0
CG1 A:VAL107 3.9 12.4 1.0
HG12 A:VAL107 4.0 14.9 1.0
CB A:HIS62 4.0 9.7 0.4
HE2 A:HIS62 4.0 30.5 0.6
OE1 A:GLN138 4.1 12.9 0.2
HD11 A:LEU111 4.1 14.5 1.0
HE22 A:GLN138 4.1 18.7 0.8
O A:HOH322 4.1 27.1 1.0
HG3 A:GLU24 4.1 14.7 0.5
HD1 A:TYR134 4.2 15.4 1.0
CG A:GLU24 4.2 12.9 0.5
OE2 A:GLU24 4.2 17.4 0.5
CG A:HIS62 4.3 11.5 0.4
HB3 A:GLU24 4.3 13.0 0.5
HG13 A:VAL107 4.3 14.9 1.0
CD A:GLN138 4.4 15.1 0.8
HG2 A:GLU24 4.5 15.6 0.5
CB A:GLU24 4.5 10.8 0.5
CD2 A:HIS62 4.6 13.0 0.4
HD2 A:HIS62 4.6 15.6 0.4
HB3 A:GLU24 4.6 10.2 0.5
NE2 A:GLN138 4.6 15.5 0.8
CG A:GLU59 4.6 15.0 1.0
HG3 A:GLU24 4.7 15.6 0.5
HA A:GLU24 4.7 10.6 0.5
HG21 A:VAL107 4.7 13.3 1.0
HE1 A:TYR134 4.7 15.5 1.0
ND1 A:HIS62 4.8 18.6 0.6
CA A:GLU59 4.8 10.7 1.0
HB3 A:GLU59 4.8 13.1 1.0
CE1 A:HIS62 4.9 19.4 0.6
CB A:GLU24 4.9 8.5 0.5
HA A:GLU24 4.9 12.3 0.5
O A:HOH465 5.0 43.8 1.0
ND1 A:HIS62 5.0 13.0 0.4
CD1 A:TYR134 5.0 12.8 1.0

Reference:

G.Zhao, H.Chen, T.Zhang. Shrimp Ferritin T158R G159R To Be Published.
Page generated: Wed Aug 7 00:50:06 2024

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