Iron in PDB 6xku: R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C)
Enzymatic activity of R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C)
All present enzymatic activity of R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C):
7.1.1.8;
Iron Binding Sites:
The binding sites of Iron atom in the R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C)
(pdb code 6xku). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C), PDB code: 6xku:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 6xku
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Iron Binding Sites List in 6xku
Iron binding site 1 out
of 10 in the R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe501
b:106.8
occ:0.25
|
FE1
|
E:FES501
|
0.0
|
106.8
|
0.2
|
|
S1
|
E:FES501
|
2.2
|
109.7
|
0.2
|
|
S2
|
E:FES501
|
2.2
|
107.1
|
0.2
|
|
SG
|
E:CYS153
|
2.3
|
107.2
|
0.2
|
|
SG
|
E:CYS133
|
2.3
|
105.9
|
0.2
|
|
CB
|
E:CYS133
|
2.8
|
103.8
|
0.2
|
|
FE2
|
E:FES501
|
3.1
|
110.0
|
0.2
|
|
CB
|
E:CYS153
|
3.6
|
108.3
|
0.2
|
|
CB
|
E:CYS138
|
3.8
|
104.2
|
0.2
|
|
CB
|
E:HIS135
|
3.9
|
108.1
|
0.2
|
|
CA
|
E:CYS133
|
4.2
|
102.4
|
0.2
|
|
N
|
E:CYS138
|
4.3
|
102.3
|
0.2
|
|
ND1
|
E:HIS135
|
4.5
|
110.7
|
0.2
|
|
CB
|
E:CYS155
|
4.5
|
109.1
|
0.2
|
|
CA
|
E:CYS138
|
4.6
|
102.5
|
0.2
|
|
SG
|
E:CYS138
|
4.6
|
105.4
|
0.2
|
|
N
|
E:LEU136
|
4.6
|
105.3
|
0.2
|
|
OG
|
E:SER158
|
4.6
|
111.4
|
0.2
|
|
CG
|
E:HIS135
|
4.7
|
109.7
|
0.2
|
|
C
|
E:CYS133
|
4.7
|
102.4
|
0.2
|
|
N
|
E:HIS135
|
4.7
|
105.4
|
0.2
|
|
CA
|
E:HIS135
|
4.8
|
106.7
|
0.2
|
|
O
|
E:CYS133
|
4.8
|
102.0
|
0.2
|
|
O
|
E:CYS138
|
4.9
|
101.1
|
0.2
|
|
CA
|
E:CYS153
|
4.9
|
108.5
|
0.2
|
|
N
|
E:GLY137
|
5.0
|
102.5
|
0.2
|
|
C
|
E:CYS138
|
5.0
|
101.6
|
0.2
|
|
Iron binding site 2 out
of 10 in 6xku
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Iron Binding Sites List in 6xku
Iron binding site 2 out
of 10 in the R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe501
b:110.0
occ:0.25
|
FE2
|
E:FES501
|
0.0
|
110.0
|
0.2
|
|
ND1
|
E:HIS135
|
2.1
|
110.7
|
0.2
|
|
ND1
|
E:HIS156
|
2.1
|
111.9
|
0.2
|
|
S1
|
E:FES501
|
2.2
|
109.7
|
0.2
|
|
S2
|
E:FES501
|
2.2
|
107.1
|
0.2
|
|
CG
|
E:HIS156
|
3.0
|
113.8
|
0.2
|
|
CE1
|
E:HIS135
|
3.0
|
112.0
|
0.2
|
|
FE1
|
E:FES501
|
3.1
|
106.8
|
0.2
|
|
CG
|
E:HIS135
|
3.2
|
109.7
|
0.2
|
|
CB
|
E:HIS156
|
3.2
|
114.3
|
0.2
|
|
CE1
|
E:HIS156
|
3.2
|
112.0
|
0.2
|
|
CB
|
E:HIS135
|
3.5
|
108.1
|
0.2
|
|
N
|
E:HIS156
|
3.7
|
112.9
|
0.2
|
|
CB
|
E:CYS155
|
3.9
|
109.1
|
0.2
|
|
CA
|
E:HIS156
|
4.1
|
114.7
|
0.2
|
|
CD2
|
E:HIS156
|
4.2
|
115.0
|
0.2
|
|
NE2
|
E:HIS135
|
4.2
|
111.9
|
0.2
|
|
NE2
|
E:HIS156
|
4.2
|
113.8
|
0.2
|
|
C
|
E:CYS155
|
4.2
|
112.5
|
0.2
|
|
CD2
|
E:HIS135
|
4.3
|
110.4
|
0.2
|
|
SG
|
E:CYS153
|
4.4
|
107.2
|
0.2
|
|
N
|
E:LEU136
|
4.7
|
105.3
|
0.2
|
|
CA
|
E:CYS155
|
4.7
|
110.7
|
0.2
|
|
OG
|
E:SER158
|
4.7
|
111.4
|
0.2
|
|
SG
|
E:CYS133
|
4.8
|
105.9
|
0.2
|
|
O
|
E:CYS155
|
4.9
|
113.7
|
0.2
|
|
CA
|
E:HIS135
|
4.9
|
106.7
|
0.2
|
|
CB
|
E:LEU136
|
4.9
|
106.1
|
0.2
|
|
C
|
E:HIS156
|
5.0
|
115.6
|
0.2
|
|
CG
|
E:LEU136
|
5.0
|
107.7
|
0.2
|
|
Iron binding site 3 out
of 10 in 6xku
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Iron Binding Sites List in 6xku
Iron binding site 3 out
of 10 in the R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Fe501
b:74.5
occ:1.00
|
FE1
|
R:FES501
|
0.0
|
74.5
|
1.0
|
|
S1
|
R:FES501
|
2.2
|
74.5
|
1.0
|
|
S2
|
R:FES501
|
2.2
|
74.5
|
1.0
|
|
SG
|
R:CYS133
|
2.3
|
105.9
|
0.2
|
|
SG
|
R:CYS153
|
2.3
|
107.2
|
0.2
|
|
CB
|
R:CYS133
|
2.8
|
103.8
|
0.2
|
|
FE2
|
R:FES501
|
3.1
|
74.5
|
1.0
|
|
CB
|
R:CYS153
|
3.6
|
108.3
|
0.2
|
|
CB
|
R:CYS138
|
3.8
|
104.2
|
0.2
|
|
CB
|
R:HIS135
|
3.9
|
108.1
|
0.2
|
|
CA
|
R:CYS133
|
4.2
|
102.4
|
0.2
|
|
N
|
R:CYS138
|
4.3
|
102.3
|
0.2
|
|
ND1
|
R:HIS135
|
4.5
|
110.7
|
0.2
|
|
CB
|
R:CYS155
|
4.5
|
109.1
|
0.2
|
|
CA
|
R:CYS138
|
4.6
|
102.5
|
0.2
|
|
N
|
R:LEU136
|
4.6
|
105.3
|
0.2
|
|
SG
|
R:CYS138
|
4.6
|
105.4
|
0.2
|
|
OG
|
R:SER158
|
4.6
|
111.4
|
0.2
|
|
CG
|
R:HIS135
|
4.7
|
109.6
|
0.2
|
|
C
|
R:CYS133
|
4.7
|
102.4
|
0.2
|
|
N
|
R:HIS135
|
4.7
|
105.4
|
0.2
|
|
CA
|
R:HIS135
|
4.8
|
106.7
|
0.2
|
|
O
|
R:CYS133
|
4.8
|
102.0
|
0.2
|
|
O
|
R:CYS138
|
4.9
|
101.1
|
0.2
|
|
CA
|
R:CYS153
|
4.9
|
108.5
|
0.2
|
|
N
|
R:GLY137
|
5.0
|
102.5
|
0.2
|
|
C
|
R:CYS138
|
5.0
|
101.6
|
0.2
|
|
Iron binding site 4 out
of 10 in 6xku
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Iron Binding Sites List in 6xku
Iron binding site 4 out
of 10 in the R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Fe501
b:74.5
occ:1.00
|
FE2
|
R:FES501
|
0.0
|
74.5
|
1.0
|
|
ND1
|
R:HIS156
|
2.1
|
111.9
|
0.2
|
|
ND1
|
R:HIS135
|
2.1
|
110.7
|
0.2
|
|
S2
|
R:FES501
|
2.2
|
74.5
|
1.0
|
|
S1
|
R:FES501
|
2.2
|
74.5
|
1.0
|
|
CG
|
R:HIS156
|
3.0
|
113.8
|
0.2
|
|
CE1
|
R:HIS135
|
3.0
|
112.0
|
0.2
|
|
FE1
|
R:FES501
|
3.1
|
74.5
|
1.0
|
|
CG
|
R:HIS135
|
3.2
|
109.6
|
0.2
|
|
CB
|
R:HIS156
|
3.2
|
114.3
|
0.2
|
|
CE1
|
R:HIS156
|
3.2
|
112.0
|
0.2
|
|
CB
|
R:HIS135
|
3.5
|
108.1
|
0.2
|
|
N
|
R:HIS156
|
3.7
|
112.9
|
0.2
|
|
CB
|
R:CYS155
|
3.9
|
109.1
|
0.2
|
|
CA
|
R:HIS156
|
4.1
|
114.7
|
0.2
|
|
CD2
|
R:HIS156
|
4.2
|
114.9
|
0.2
|
|
NE2
|
R:HIS135
|
4.2
|
111.9
|
0.2
|
|
NE2
|
R:HIS156
|
4.2
|
113.8
|
0.2
|
|
C
|
R:CYS155
|
4.2
|
112.5
|
0.2
|
|
CD2
|
R:HIS135
|
4.3
|
110.4
|
0.2
|
|
SG
|
R:CYS153
|
4.4
|
107.2
|
0.2
|
|
N
|
R:LEU136
|
4.7
|
105.3
|
0.2
|
|
CA
|
R:CYS155
|
4.7
|
110.7
|
0.2
|
|
OG
|
R:SER158
|
4.7
|
111.4
|
0.2
|
|
SG
|
R:CYS133
|
4.8
|
105.9
|
0.2
|
|
O
|
R:CYS155
|
4.9
|
113.7
|
0.2
|
|
CA
|
R:HIS135
|
4.9
|
106.7
|
0.2
|
|
CB
|
R:LEU136
|
4.9
|
106.1
|
0.2
|
|
C
|
R:HIS156
|
5.0
|
115.6
|
0.2
|
|
CG
|
R:LEU136
|
5.0
|
107.7
|
0.2
|
|
Iron binding site 5 out
of 10 in 6xku
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Iron Binding Sites List in 6xku
Iron binding site 5 out
of 10 in the R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe501
b:46.9
occ:1.00
|
FE
|
C:HEC501
|
0.0
|
46.9
|
1.0
|
|
NE2
|
C:HIS97
|
2.0
|
46.5
|
1.0
|
|
NC
|
C:HEC501
|
2.0
|
51.4
|
1.0
|
|
NE2
|
C:HIS198
|
2.0
|
41.0
|
1.0
|
|
ND
|
C:HEC501
|
2.0
|
51.7
|
1.0
|
|
NB
|
C:HEC501
|
2.0
|
51.7
|
1.0
|
|
NA
|
C:HEC501
|
2.1
|
51.4
|
1.0
|
|
CE1
|
C:HIS97
|
2.8
|
84.7
|
1.0
|
|
CE1
|
C:HIS198
|
3.0
|
54.2
|
1.0
|
|
C4C
|
C:HEC501
|
3.0
|
52.6
|
1.0
|
|
C1C
|
C:HEC501
|
3.0
|
52.0
|
1.0
|
|
C1D
|
C:HEC501
|
3.0
|
52.3
|
1.0
|
|
C4B
|
C:HEC501
|
3.0
|
52.2
|
1.0
|
|
CD2
|
C:HIS97
|
3.1
|
79.5
|
1.0
|
|
C1B
|
C:HEC501
|
3.1
|
51.7
|
1.0
|
|
C4D
|
C:HEC501
|
3.1
|
52.3
|
1.0
|
|
CD2
|
C:HIS198
|
3.1
|
40.2
|
1.0
|
|
C4A
|
C:HEC501
|
3.1
|
51.4
|
1.0
|
|
C1A
|
C:HEC501
|
3.1
|
51.7
|
1.0
|
|
CHD
|
C:HEC501
|
3.4
|
53.0
|
1.0
|
|
CHC
|
C:HEC501
|
3.4
|
52.9
|
1.0
|
|
CHB
|
C:HEC501
|
3.5
|
51.8
|
1.0
|
|
CHA
|
C:HEC501
|
3.5
|
52.1
|
1.0
|
|
ND1
|
C:HIS97
|
3.9
|
92.4
|
1.0
|
|
CG
|
C:HIS97
|
4.1
|
85.4
|
1.0
|
|
ND1
|
C:HIS198
|
4.1
|
46.1
|
1.0
|
|
C3C
|
C:HEC501
|
4.2
|
52.3
|
1.0
|
|
CG
|
C:HIS198
|
4.2
|
73.3
|
1.0
|
|
C2C
|
C:HEC501
|
4.2
|
51.7
|
1.0
|
|
C3B
|
C:HEC501
|
4.3
|
51.1
|
1.0
|
|
C2D
|
C:HEC501
|
4.3
|
52.5
|
1.0
|
|
C2B
|
C:HEC501
|
4.3
|
51.1
|
1.0
|
|
C3D
|
C:HEC501
|
4.3
|
52.0
|
1.0
|
|
C2A
|
C:HEC501
|
4.3
|
51.9
|
1.0
|
|
C3A
|
C:HEC501
|
4.3
|
51.6
|
1.0
|
|
OE1
|
C:GLN58
|
5.0
|
12.1
|
1.0
|
|
Iron binding site 6 out
of 10 in 6xku
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Iron Binding Sites List in 6xku
Iron binding site 6 out
of 10 in the R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe502
b:49.1
occ:1.00
|
FE
|
C:HEC502
|
0.0
|
49.1
|
1.0
|
|
ND
|
C:HEC502
|
2.0
|
54.4
|
1.0
|
|
NE2
|
C:HIS212
|
2.0
|
40.9
|
1.0
|
|
NA
|
C:HEC502
|
2.0
|
54.1
|
1.0
|
|
NE2
|
C:HIS111
|
2.0
|
40.4
|
1.0
|
|
NC
|
C:HEC502
|
2.1
|
53.5
|
1.0
|
|
NB
|
C:HEC502
|
2.1
|
54.3
|
1.0
|
|
CE1
|
C:HIS212
|
2.9
|
36.6
|
1.0
|
|
C4D
|
C:HEC502
|
3.0
|
54.3
|
1.0
|
|
C1D
|
C:HEC502
|
3.0
|
54.8
|
1.0
|
|
CD2
|
C:HIS111
|
3.0
|
36.8
|
1.0
|
|
C1A
|
C:HEC502
|
3.0
|
54.8
|
1.0
|
|
CE1
|
C:HIS111
|
3.0
|
36.3
|
1.0
|
|
C4C
|
C:HEC502
|
3.1
|
54.2
|
1.0
|
|
CD2
|
C:HIS212
|
3.1
|
37.0
|
1.0
|
|
C4A
|
C:HEC502
|
3.1
|
53.6
|
1.0
|
|
C1C
|
C:HEC502
|
3.1
|
54.2
|
1.0
|
|
C1B
|
C:HEC502
|
3.1
|
54.4
|
1.0
|
|
C4B
|
C:HEC502
|
3.2
|
53.6
|
1.0
|
|
CHA
|
C:HEC502
|
3.4
|
54.5
|
1.0
|
|
CHD
|
C:HEC502
|
3.4
|
54.8
|
1.0
|
|
CHB
|
C:HEC502
|
3.5
|
53.5
|
1.0
|
|
CHC
|
C:HEC502
|
3.5
|
53.9
|
1.0
|
|
ND1
|
C:HIS212
|
4.1
|
37.1
|
1.0
|
|
ND1
|
C:HIS111
|
4.1
|
36.8
|
1.0
|
|
CG
|
C:HIS212
|
4.2
|
36.9
|
1.0
|
|
CG
|
C:HIS111
|
4.2
|
36.8
|
1.0
|
|
C3D
|
C:HEC502
|
4.2
|
54.4
|
1.0
|
|
C2D
|
C:HEC502
|
4.2
|
54.7
|
1.0
|
|
C2A
|
C:HEC502
|
4.3
|
54.0
|
1.0
|
|
C3A
|
C:HEC502
|
4.3
|
54.2
|
1.0
|
|
C3C
|
C:HEC502
|
4.3
|
54.3
|
1.0
|
|
C2C
|
C:HEC502
|
4.3
|
54.5
|
1.0
|
|
C2B
|
C:HEC502
|
4.4
|
53.7
|
1.0
|
|
C3B
|
C:HEC502
|
4.4
|
52.9
|
1.0
|
|
Iron binding site 7 out
of 10 in 6xku
Go back to
Iron Binding Sites List in 6xku
Iron binding site 7 out
of 10 in the R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe501
b:43.4
occ:1.00
|
FE
|
D:HEC501
|
0.0
|
43.4
|
1.0
|
|
NE2
|
D:HIS38
|
2.0
|
57.4
|
1.0
|
|
NB
|
D:HEC501
|
2.0
|
47.2
|
1.0
|
|
NC
|
D:HEC501
|
2.0
|
48.4
|
1.0
|
|
NA
|
D:HEC501
|
2.1
|
48.5
|
1.0
|
|
ND
|
D:HEC501
|
2.1
|
48.0
|
1.0
|
|
SD
|
D:MET183
|
2.1
|
55.8
|
1.0
|
|
CD2
|
D:HIS38
|
2.9
|
52.2
|
1.0
|
|
CE1
|
D:HIS38
|
3.0
|
52.2
|
1.0
|
|
C4B
|
D:HEC501
|
3.0
|
48.2
|
1.0
|
|
C1C
|
D:HEC501
|
3.1
|
48.8
|
1.0
|
|
C1B
|
D:HEC501
|
3.1
|
47.7
|
1.0
|
|
C4A
|
D:HEC501
|
3.1
|
48.4
|
1.0
|
|
C1A
|
D:HEC501
|
3.1
|
48.5
|
1.0
|
|
C4C
|
D:HEC501
|
3.1
|
48.0
|
1.0
|
|
C4D
|
D:HEC501
|
3.1
|
48.1
|
1.0
|
|
C1D
|
D:HEC501
|
3.1
|
47.9
|
1.0
|
|
CHC
|
D:HEC501
|
3.4
|
49.0
|
1.0
|
|
CE
|
D:MET183
|
3.4
|
45.4
|
1.0
|
|
CHB
|
D:HEC501
|
3.4
|
48.3
|
1.0
|
|
CHD
|
D:HEC501
|
3.4
|
47.8
|
1.0
|
|
CHA
|
D:HEC501
|
3.4
|
48.8
|
1.0
|
|
CG
|
D:MET183
|
3.5
|
45.7
|
1.0
|
|
CG
|
D:HIS38
|
4.0
|
51.7
|
1.0
|
|
ND1
|
D:HIS38
|
4.1
|
51.7
|
1.0
|
|
CB
|
D:MET183
|
4.2
|
45.7
|
1.0
|
|
C3B
|
D:HEC501
|
4.3
|
48.4
|
1.0
|
|
C2B
|
D:HEC501
|
4.3
|
48.3
|
1.0
|
|
C3A
|
D:HEC501
|
4.3
|
48.1
|
1.0
|
|
C2A
|
D:HEC501
|
4.3
|
47.9
|
1.0
|
|
C2C
|
D:HEC501
|
4.3
|
48.1
|
1.0
|
|
C3C
|
D:HEC501
|
4.3
|
48.2
|
1.0
|
|
C3D
|
D:HEC501
|
4.3
|
47.9
|
1.0
|
|
C2D
|
D:HEC501
|
4.3
|
48.0
|
1.0
|
|
Iron binding site 8 out
of 10 in 6xku
Go back to
Iron Binding Sites List in 6xku
Iron binding site 8 out
of 10 in the R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe501
b:46.9
occ:1.00
|
FE
|
P:HEC501
|
0.0
|
46.9
|
1.0
|
|
NE2
|
P:HIS97
|
2.0
|
46.5
|
1.0
|
|
NC
|
P:HEC501
|
2.0
|
51.4
|
1.0
|
|
NE2
|
P:HIS198
|
2.0
|
41.0
|
1.0
|
|
ND
|
P:HEC501
|
2.0
|
51.7
|
1.0
|
|
NB
|
P:HEC501
|
2.0
|
51.7
|
1.0
|
|
NA
|
P:HEC501
|
2.1
|
51.4
|
1.0
|
|
CE1
|
P:HIS97
|
2.8
|
84.7
|
1.0
|
|
CE1
|
P:HIS198
|
3.0
|
54.2
|
1.0
|
|
C4C
|
P:HEC501
|
3.0
|
52.6
|
1.0
|
|
C1C
|
P:HEC501
|
3.0
|
52.0
|
1.0
|
|
C1D
|
P:HEC501
|
3.0
|
52.3
|
1.0
|
|
C4B
|
P:HEC501
|
3.0
|
52.2
|
1.0
|
|
CD2
|
P:HIS97
|
3.1
|
79.5
|
1.0
|
|
C1B
|
P:HEC501
|
3.1
|
51.7
|
1.0
|
|
C4D
|
P:HEC501
|
3.1
|
52.3
|
1.0
|
|
CD2
|
P:HIS198
|
3.1
|
40.2
|
1.0
|
|
C4A
|
P:HEC501
|
3.1
|
51.4
|
1.0
|
|
C1A
|
P:HEC501
|
3.1
|
51.7
|
1.0
|
|
CHD
|
P:HEC501
|
3.4
|
53.0
|
1.0
|
|
CHC
|
P:HEC501
|
3.4
|
52.9
|
1.0
|
|
CHB
|
P:HEC501
|
3.5
|
51.8
|
1.0
|
|
CHA
|
P:HEC501
|
3.5
|
52.1
|
1.0
|
|
ND1
|
P:HIS97
|
3.9
|
92.4
|
1.0
|
|
CG
|
P:HIS97
|
4.1
|
85.4
|
1.0
|
|
ND1
|
P:HIS198
|
4.1
|
46.1
|
1.0
|
|
C3C
|
P:HEC501
|
4.2
|
52.3
|
1.0
|
|
CG
|
P:HIS198
|
4.2
|
73.3
|
1.0
|
|
C2C
|
P:HEC501
|
4.2
|
51.7
|
1.0
|
|
C3B
|
P:HEC501
|
4.3
|
51.1
|
1.0
|
|
C2D
|
P:HEC501
|
4.3
|
52.5
|
1.0
|
|
C2B
|
P:HEC501
|
4.3
|
51.1
|
1.0
|
|
C3D
|
P:HEC501
|
4.3
|
52.0
|
1.0
|
|
C2A
|
P:HEC501
|
4.3
|
51.9
|
1.0
|
|
C3A
|
P:HEC501
|
4.3
|
51.6
|
1.0
|
|
OE1
|
P:GLN58
|
5.0
|
12.1
|
1.0
|
|
Iron binding site 9 out
of 10 in 6xku
Go back to
Iron Binding Sites List in 6xku
Iron binding site 9 out
of 10 in the R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe502
b:49.1
occ:1.00
|
FE
|
P:HEC502
|
0.0
|
49.1
|
1.0
|
|
ND
|
P:HEC502
|
2.0
|
54.4
|
1.0
|
|
NE2
|
P:HIS212
|
2.0
|
40.9
|
1.0
|
|
NA
|
P:HEC502
|
2.0
|
54.1
|
1.0
|
|
NE2
|
P:HIS111
|
2.0
|
40.4
|
1.0
|
|
NC
|
P:HEC502
|
2.1
|
53.5
|
1.0
|
|
NB
|
P:HEC502
|
2.1
|
54.3
|
1.0
|
|
CE1
|
P:HIS212
|
2.9
|
36.6
|
1.0
|
|
C4D
|
P:HEC502
|
3.0
|
54.3
|
1.0
|
|
C1D
|
P:HEC502
|
3.0
|
54.8
|
1.0
|
|
CD2
|
P:HIS111
|
3.0
|
36.8
|
1.0
|
|
C1A
|
P:HEC502
|
3.0
|
54.8
|
1.0
|
|
CE1
|
P:HIS111
|
3.0
|
36.3
|
1.0
|
|
C4C
|
P:HEC502
|
3.1
|
54.2
|
1.0
|
|
CD2
|
P:HIS212
|
3.1
|
37.0
|
1.0
|
|
C4A
|
P:HEC502
|
3.1
|
53.6
|
1.0
|
|
C1C
|
P:HEC502
|
3.1
|
54.2
|
1.0
|
|
C1B
|
P:HEC502
|
3.1
|
54.4
|
1.0
|
|
C4B
|
P:HEC502
|
3.2
|
53.6
|
1.0
|
|
CHA
|
P:HEC502
|
3.4
|
54.5
|
1.0
|
|
CHD
|
P:HEC502
|
3.4
|
54.8
|
1.0
|
|
CHB
|
P:HEC502
|
3.5
|
53.5
|
1.0
|
|
CHC
|
P:HEC502
|
3.5
|
53.9
|
1.0
|
|
ND1
|
P:HIS212
|
4.1
|
37.1
|
1.0
|
|
ND1
|
P:HIS111
|
4.1
|
36.8
|
1.0
|
|
CG
|
P:HIS212
|
4.2
|
36.9
|
1.0
|
|
CG
|
P:HIS111
|
4.2
|
36.8
|
1.0
|
|
C3D
|
P:HEC502
|
4.2
|
54.4
|
1.0
|
|
C2D
|
P:HEC502
|
4.2
|
54.7
|
1.0
|
|
C2A
|
P:HEC502
|
4.3
|
54.0
|
1.0
|
|
C3A
|
P:HEC502
|
4.3
|
54.2
|
1.0
|
|
C3C
|
P:HEC502
|
4.3
|
54.3
|
1.0
|
|
C2C
|
P:HEC502
|
4.3
|
54.5
|
1.0
|
|
C2B
|
P:HEC502
|
4.4
|
53.7
|
1.0
|
|
C3B
|
P:HEC502
|
4.4
|
52.9
|
1.0
|
|
Iron binding site 10 out
of 10 in 6xku
Go back to
Iron Binding Sites List in 6xku
Iron binding site 10 out
of 10 in the R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of R. Capsulatus Cyt BC1 with One Fes Protein in B Position and One in C Position (CIII2 B-C) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Fe501
b:43.4
occ:1.00
|
FE
|
Q:HEC501
|
0.0
|
43.4
|
1.0
|
|
NE2
|
Q:HIS38
|
2.0
|
57.4
|
1.0
|
|
NB
|
Q:HEC501
|
2.0
|
47.2
|
1.0
|
|
NC
|
Q:HEC501
|
2.0
|
48.4
|
1.0
|
|
NA
|
Q:HEC501
|
2.1
|
48.5
|
1.0
|
|
ND
|
Q:HEC501
|
2.1
|
48.0
|
1.0
|
|
SD
|
Q:MET183
|
2.1
|
55.8
|
1.0
|
|
CD2
|
Q:HIS38
|
2.9
|
52.2
|
1.0
|
|
CE1
|
Q:HIS38
|
3.0
|
52.2
|
1.0
|
|
C4B
|
Q:HEC501
|
3.0
|
48.2
|
1.0
|
|
C1C
|
Q:HEC501
|
3.1
|
48.8
|
1.0
|
|
C1B
|
Q:HEC501
|
3.1
|
47.7
|
1.0
|
|
C4A
|
Q:HEC501
|
3.1
|
48.4
|
1.0
|
|
C1A
|
Q:HEC501
|
3.1
|
48.5
|
1.0
|
|
C4C
|
Q:HEC501
|
3.1
|
48.0
|
1.0
|
|
C4D
|
Q:HEC501
|
3.1
|
48.1
|
1.0
|
|
C1D
|
Q:HEC501
|
3.1
|
47.9
|
1.0
|
|
CHC
|
Q:HEC501
|
3.4
|
49.0
|
1.0
|
|
CE
|
Q:MET183
|
3.4
|
45.4
|
1.0
|
|
CHB
|
Q:HEC501
|
3.4
|
48.3
|
1.0
|
|
CHD
|
Q:HEC501
|
3.4
|
47.8
|
1.0
|
|
CHA
|
Q:HEC501
|
3.4
|
48.8
|
1.0
|
|
CG
|
Q:MET183
|
3.5
|
45.7
|
1.0
|
|
CG
|
Q:HIS38
|
4.0
|
51.7
|
1.0
|
|
ND1
|
Q:HIS38
|
4.1
|
51.7
|
1.0
|
|
CB
|
Q:MET183
|
4.2
|
45.7
|
1.0
|
|
C3B
|
Q:HEC501
|
4.3
|
48.4
|
1.0
|
|
C2B
|
Q:HEC501
|
4.3
|
48.3
|
1.0
|
|
C3A
|
Q:HEC501
|
4.3
|
48.1
|
1.0
|
|
C2A
|
Q:HEC501
|
4.3
|
47.9
|
1.0
|
|
C2C
|
Q:HEC501
|
4.3
|
48.1
|
1.0
|
|
C3C
|
Q:HEC501
|
4.3
|
48.2
|
1.0
|
|
C3D
|
Q:HEC501
|
4.3
|
47.9
|
1.0
|
|
C2D
|
Q:HEC501
|
4.3
|
48.0
|
1.0
|
|
Reference:
S.Steimle,
T.Van Eeuwen,
Y.Ozturk,
H.J.Kim,
M.Braitbard,
N.Selamoglu,
B.A.Garcia,
D.Schneidman-Duhovny,
K.Murakami,
F.Daldal.
Cryo-Em Structures of Respiratory BC1-CBB3 Type CIII2CIV Supercomplex and Electronic Communication Between the Complexes To Be Published.
Page generated: Wed Aug 7 15:26:10 2024
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