Iron in PDB 6ymx: CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae
Enzymatic activity of CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae
All present enzymatic activity of CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae:
1.9.3.1;
7.1.1.8;
Other elements in 6ymx:
The structure of CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae
(pdb code 6ymx). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae, PDB code: 6ymx:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 6ymx
Go back to
Iron Binding Sites List in 6ymx
Iron binding site 1 out
of 12 in the CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Fe602
b:0.4
occ:1.00
|
FE
|
a:HEA602
|
0.0
|
0.4
|
1.0
|
|
ND
|
a:HEA602
|
1.9
|
0.4
|
1.0
|
|
NB
|
a:HEA602
|
2.0
|
0.4
|
1.0
|
|
NA
|
a:HEA602
|
2.0
|
0.4
|
1.0
|
|
NC
|
a:HEA602
|
2.0
|
0.4
|
1.0
|
|
NE2
|
a:HIS62
|
2.7
|
0.1
|
1.0
|
|
NE2
|
a:HIS378
|
2.8
|
0.3
|
1.0
|
|
C4D
|
a:HEA602
|
2.9
|
0.4
|
1.0
|
|
CE1
|
a:HIS378
|
3.0
|
0.3
|
1.0
|
|
C1D
|
a:HEA602
|
3.0
|
0.4
|
1.0
|
|
C1B
|
a:HEA602
|
3.0
|
0.4
|
1.0
|
|
C1A
|
a:HEA602
|
3.0
|
0.4
|
1.0
|
|
C4C
|
a:HEA602
|
3.0
|
0.4
|
1.0
|
|
C4B
|
a:HEA602
|
3.0
|
0.4
|
1.0
|
|
C4A
|
a:HEA602
|
3.0
|
0.4
|
1.0
|
|
C1C
|
a:HEA602
|
3.1
|
0.4
|
1.0
|
|
CHD
|
a:HEA602
|
3.3
|
0.4
|
1.0
|
|
CHA
|
a:HEA602
|
3.3
|
0.4
|
1.0
|
|
CHB
|
a:HEA602
|
3.4
|
0.4
|
1.0
|
|
CHC
|
a:HEA602
|
3.4
|
0.4
|
1.0
|
|
CE1
|
a:HIS62
|
3.5
|
0.1
|
1.0
|
|
CD2
|
a:HIS62
|
3.7
|
0.1
|
1.0
|
|
CD2
|
a:HIS378
|
4.0
|
0.3
|
1.0
|
|
ND1
|
a:HIS378
|
4.2
|
0.3
|
1.0
|
|
C3D
|
a:HEA602
|
4.2
|
0.4
|
1.0
|
|
C2D
|
a:HEA602
|
4.2
|
0.4
|
1.0
|
|
C2B
|
a:HEA602
|
4.2
|
0.4
|
1.0
|
|
C2A
|
a:HEA602
|
4.3
|
0.4
|
1.0
|
|
C3B
|
a:HEA602
|
4.3
|
0.4
|
1.0
|
|
C3A
|
a:HEA602
|
4.3
|
0.4
|
1.0
|
|
C3C
|
a:HEA602
|
4.3
|
0.4
|
1.0
|
|
C2C
|
a:HEA602
|
4.3
|
0.4
|
1.0
|
|
ND1
|
a:HIS62
|
4.7
|
0.1
|
1.0
|
|
CG
|
a:HIS378
|
4.7
|
0.3
|
1.0
|
|
CG
|
a:HIS62
|
4.8
|
0.1
|
1.0
|
|
Iron binding site 2 out
of 12 in 6ymx
Go back to
Iron Binding Sites List in 6ymx
Iron binding site 2 out
of 12 in the CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Fe603
b:0.2
occ:1.00
|
FE
|
a:HEA603
|
0.0
|
0.2
|
1.0
|
|
ND
|
a:HEA603
|
1.9
|
0.2
|
1.0
|
|
NB
|
a:HEA603
|
2.0
|
0.2
|
1.0
|
|
NA
|
a:HEA603
|
2.0
|
0.2
|
1.0
|
|
NC
|
a:HEA603
|
2.0
|
0.2
|
1.0
|
|
NE2
|
a:HIS376
|
2.8
|
0.0
|
1.0
|
|
C4D
|
a:HEA603
|
2.9
|
0.2
|
1.0
|
|
C1D
|
a:HEA603
|
3.0
|
0.2
|
1.0
|
|
C1B
|
a:HEA603
|
3.0
|
0.2
|
1.0
|
|
C1A
|
a:HEA603
|
3.0
|
0.2
|
1.0
|
|
C4B
|
a:HEA603
|
3.0
|
0.2
|
1.0
|
|
C4C
|
a:HEA603
|
3.0
|
0.2
|
1.0
|
|
C4A
|
a:HEA603
|
3.1
|
0.2
|
1.0
|
|
C1C
|
a:HEA603
|
3.1
|
0.2
|
1.0
|
|
CHD
|
a:HEA603
|
3.3
|
0.2
|
1.0
|
|
CHA
|
a:HEA603
|
3.3
|
0.2
|
1.0
|
|
CHB
|
a:HEA603
|
3.4
|
0.2
|
1.0
|
|
CHC
|
a:HEA603
|
3.4
|
0.2
|
1.0
|
|
CE1
|
a:HIS376
|
3.7
|
0.0
|
1.0
|
|
CD2
|
a:HIS376
|
3.7
|
0.0
|
1.0
|
|
CU
|
a:CU601
|
4.0
|
0.3
|
1.0
|
|
C3D
|
a:HEA603
|
4.2
|
0.2
|
1.0
|
|
C2D
|
a:HEA603
|
4.2
|
0.2
|
1.0
|
|
C2B
|
a:HEA603
|
4.2
|
0.2
|
1.0
|
|
C2A
|
a:HEA603
|
4.3
|
0.2
|
1.0
|
|
C3A
|
a:HEA603
|
4.3
|
0.2
|
1.0
|
|
C3B
|
a:HEA603
|
4.3
|
0.2
|
1.0
|
|
C2C
|
a:HEA603
|
4.3
|
0.2
|
1.0
|
|
C3C
|
a:HEA603
|
4.3
|
0.2
|
1.0
|
|
ND1
|
a:HIS376
|
4.9
|
0.0
|
1.0
|
|
CG
|
a:HIS376
|
4.9
|
0.0
|
1.0
|
|
Iron binding site 3 out
of 12 in 6ymx
Go back to
Iron Binding Sites List in 6ymx
Iron binding site 3 out
of 12 in the CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe402
b:60.1
occ:1.00
|
FE
|
C:HEM402
|
0.0
|
60.1
|
1.0
|
|
NB
|
C:HEM402
|
1.9
|
60.1
|
1.0
|
|
NA
|
C:HEM402
|
2.0
|
60.1
|
1.0
|
|
NC
|
C:HEM402
|
2.0
|
60.1
|
1.0
|
|
ND
|
C:HEM402
|
2.1
|
60.1
|
1.0
|
|
NE2
|
C:HIS183
|
2.7
|
57.3
|
1.0
|
|
NE2
|
C:HIS82
|
2.7
|
59.1
|
1.0
|
|
C1B
|
C:HEM402
|
2.9
|
60.1
|
1.0
|
|
C4B
|
C:HEM402
|
2.9
|
60.1
|
1.0
|
|
C4A
|
C:HEM402
|
3.0
|
60.1
|
1.0
|
|
CE1
|
C:HIS82
|
3.0
|
59.1
|
1.0
|
|
CE1
|
C:HIS183
|
3.0
|
57.3
|
1.0
|
|
C1C
|
C:HEM402
|
3.0
|
60.1
|
1.0
|
|
C4C
|
C:HEM402
|
3.0
|
60.1
|
1.0
|
|
C1A
|
C:HEM402
|
3.0
|
60.1
|
1.0
|
|
C1D
|
C:HEM402
|
3.1
|
60.1
|
1.0
|
|
C4D
|
C:HEM402
|
3.2
|
60.1
|
1.0
|
|
CHB
|
C:HEM402
|
3.3
|
60.1
|
1.0
|
|
CHC
|
C:HEM402
|
3.3
|
60.1
|
1.0
|
|
CHD
|
C:HEM402
|
3.4
|
60.1
|
1.0
|
|
CHA
|
C:HEM402
|
3.4
|
60.1
|
1.0
|
|
CD2
|
C:HIS82
|
3.9
|
59.1
|
1.0
|
|
CD2
|
C:HIS183
|
4.0
|
57.3
|
1.0
|
|
C2B
|
C:HEM402
|
4.1
|
60.1
|
1.0
|
|
C3B
|
C:HEM402
|
4.1
|
60.1
|
1.0
|
|
C3A
|
C:HEM402
|
4.2
|
60.1
|
1.0
|
|
C2A
|
C:HEM402
|
4.2
|
60.1
|
1.0
|
|
C3C
|
C:HEM402
|
4.2
|
60.1
|
1.0
|
|
C2C
|
C:HEM402
|
4.2
|
60.1
|
1.0
|
|
ND1
|
C:HIS82
|
4.2
|
59.1
|
1.0
|
|
ND1
|
C:HIS183
|
4.3
|
57.3
|
1.0
|
|
C2D
|
C:HEM402
|
4.3
|
60.1
|
1.0
|
|
C3D
|
C:HEM402
|
4.4
|
60.1
|
1.0
|
|
CG
|
C:HIS82
|
4.7
|
59.1
|
1.0
|
|
CG
|
C:HIS183
|
4.8
|
57.3
|
1.0
|
|
Iron binding site 4 out
of 12 in 6ymx
Go back to
Iron Binding Sites List in 6ymx
Iron binding site 4 out
of 12 in the CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe403
b:58.4
occ:1.00
|
FE
|
C:HEM403
|
0.0
|
58.4
|
1.0
|
|
NB
|
C:HEM403
|
1.9
|
58.4
|
1.0
|
|
NC
|
C:HEM403
|
2.0
|
58.4
|
1.0
|
|
NA
|
C:HEM403
|
2.0
|
58.4
|
1.0
|
|
ND
|
C:HEM403
|
2.0
|
58.4
|
1.0
|
|
NE2
|
C:HIS197
|
2.7
|
58.7
|
1.0
|
|
NE2
|
C:HIS96
|
2.7
|
59.1
|
1.0
|
|
C1B
|
C:HEM403
|
2.9
|
58.4
|
1.0
|
|
C4A
|
C:HEM403
|
2.9
|
58.4
|
1.0
|
|
C4C
|
C:HEM403
|
3.0
|
58.4
|
1.0
|
|
C4B
|
C:HEM403
|
3.0
|
58.4
|
1.0
|
|
C1C
|
C:HEM403
|
3.0
|
58.4
|
1.0
|
|
C1D
|
C:HEM403
|
3.0
|
58.4
|
1.0
|
|
C1A
|
C:HEM403
|
3.0
|
58.4
|
1.0
|
|
C4D
|
C:HEM403
|
3.1
|
58.4
|
1.0
|
|
CHB
|
C:HEM403
|
3.3
|
58.4
|
1.0
|
|
CD2
|
C:HIS197
|
3.4
|
58.7
|
1.0
|
|
CHD
|
C:HEM403
|
3.4
|
58.4
|
1.0
|
|
CHC
|
C:HEM403
|
3.4
|
58.4
|
1.0
|
|
CD2
|
C:HIS96
|
3.4
|
59.1
|
1.0
|
|
CHA
|
C:HEM403
|
3.5
|
58.4
|
1.0
|
|
CE1
|
C:HIS197
|
3.5
|
58.7
|
1.0
|
|
CE1
|
C:HIS96
|
3.7
|
59.1
|
1.0
|
|
C3A
|
C:HEM403
|
4.2
|
58.4
|
1.0
|
|
C2B
|
C:HEM403
|
4.2
|
58.4
|
1.0
|
|
C3B
|
C:HEM403
|
4.2
|
58.4
|
1.0
|
|
C2A
|
C:HEM403
|
4.2
|
58.4
|
1.0
|
|
C3C
|
C:HEM403
|
4.2
|
58.4
|
1.0
|
|
C2C
|
C:HEM403
|
4.2
|
58.4
|
1.0
|
|
C2D
|
C:HEM403
|
4.2
|
58.4
|
1.0
|
|
C3D
|
C:HEM403
|
4.3
|
58.4
|
1.0
|
|
CG
|
C:HIS197
|
4.3
|
58.7
|
1.0
|
|
ND1
|
C:HIS197
|
4.4
|
58.7
|
1.0
|
|
CG
|
C:HIS96
|
4.5
|
59.1
|
1.0
|
|
ND1
|
C:HIS96
|
4.6
|
59.1
|
1.0
|
|
Iron binding site 5 out
of 12 in 6ymx
Go back to
Iron Binding Sites List in 6ymx
Iron binding site 5 out
of 12 in the CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe401
b:69.2
occ:1.00
|
FE
|
D:HEM401
|
0.0
|
69.2
|
1.0
|
|
NA
|
D:HEM401
|
1.9
|
69.2
|
1.0
|
|
ND
|
D:HEM401
|
2.0
|
69.2
|
1.0
|
|
NB
|
D:HEM401
|
2.0
|
69.2
|
1.0
|
|
NC
|
D:HEM401
|
2.0
|
69.2
|
1.0
|
|
NE2
|
D:HIS105
|
2.7
|
64.6
|
1.0
|
|
C1A
|
D:HEM401
|
2.9
|
69.2
|
1.0
|
|
C4D
|
D:HEM401
|
3.0
|
69.2
|
1.0
|
|
SD
|
D:MET225
|
3.0
|
71.2
|
1.0
|
|
C4A
|
D:HEM401
|
3.0
|
69.2
|
1.0
|
|
CE1
|
D:HIS105
|
3.0
|
64.6
|
1.0
|
|
C4B
|
D:HEM401
|
3.0
|
69.2
|
1.0
|
|
C1C
|
D:HEM401
|
3.0
|
69.2
|
1.0
|
|
C1B
|
D:HEM401
|
3.0
|
69.2
|
1.0
|
|
C1D
|
D:HEM401
|
3.1
|
69.2
|
1.0
|
|
C4C
|
D:HEM401
|
3.1
|
69.2
|
1.0
|
|
CHA
|
D:HEM401
|
3.3
|
69.2
|
1.0
|
|
CHC
|
D:HEM401
|
3.4
|
69.2
|
1.0
|
|
CHB
|
D:HEM401
|
3.4
|
69.2
|
1.0
|
|
CHD
|
D:HEM401
|
3.5
|
69.2
|
1.0
|
|
CE
|
D:MET225
|
3.9
|
71.2
|
1.0
|
|
CD2
|
D:HIS105
|
3.9
|
64.6
|
1.0
|
|
CG
|
D:MET225
|
3.9
|
71.2
|
1.0
|
|
CB
|
D:MET225
|
4.1
|
71.2
|
1.0
|
|
C2A
|
D:HEM401
|
4.2
|
69.2
|
1.0
|
|
C3A
|
D:HEM401
|
4.2
|
69.2
|
1.0
|
|
C3D
|
D:HEM401
|
4.2
|
69.2
|
1.0
|
|
ND1
|
D:HIS105
|
4.2
|
64.6
|
1.0
|
|
C2B
|
D:HEM401
|
4.2
|
69.2
|
1.0
|
|
C3B
|
D:HEM401
|
4.2
|
69.2
|
1.0
|
|
C2D
|
D:HEM401
|
4.2
|
69.2
|
1.0
|
|
C2C
|
D:HEM401
|
4.3
|
69.2
|
1.0
|
|
C3C
|
D:HEM401
|
4.3
|
69.2
|
1.0
|
|
CG
|
D:HIS105
|
4.7
|
64.6
|
1.0
|
|
Iron binding site 6 out
of 12 in 6ymx
Go back to
Iron Binding Sites List in 6ymx
Iron binding site 6 out
of 12 in the CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe302
b:0.0
occ:1.00
|
FE1
|
E:FES302
|
0.0
|
0.0
|
1.0
|
|
S2
|
E:FES302
|
2.2
|
0.0
|
1.0
|
|
S1
|
E:FES302
|
2.2
|
0.0
|
1.0
|
|
FE2
|
E:FES302
|
3.1
|
0.0
|
1.0
|
|
CB
|
E:CYS159
|
3.2
|
0.1
|
1.0
|
|
OH
|
E:TYR185
|
3.3
|
0.5
|
1.0
|
|
SG
|
E:CYS178
|
3.4
|
0.7
|
1.0
|
|
SG
|
E:CYS159
|
3.6
|
0.1
|
1.0
|
|
CB
|
E:CYS178
|
3.8
|
0.7
|
1.0
|
|
CB
|
E:HIS161
|
4.1
|
1.0
|
1.0
|
|
OG
|
E:SER183
|
4.1
|
0.9
|
1.0
|
|
CB
|
E:SER183
|
4.3
|
0.9
|
1.0
|
|
CZ
|
E:TYR185
|
4.3
|
0.5
|
1.0
|
|
CE2
|
E:TYR185
|
4.5
|
0.5
|
1.0
|
|
N
|
E:HIS161
|
4.6
|
1.0
|
1.0
|
|
CA
|
E:CYS159
|
4.6
|
0.1
|
1.0
|
|
N
|
E:LEU162
|
4.8
|
0.8
|
1.0
|
|
CA
|
E:HIS161
|
4.9
|
1.0
|
1.0
|
|
C
|
E:CYS159
|
4.9
|
0.1
|
1.0
|
|
N
|
E:THR160
|
5.0
|
0.4
|
1.0
|
|
Iron binding site 7 out
of 12 in 6ymx
Go back to
Iron Binding Sites List in 6ymx
Iron binding site 7 out
of 12 in the CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe302
b:0.0
occ:1.00
|
FE2
|
E:FES302
|
0.0
|
0.0
|
1.0
|
|
S1
|
E:FES302
|
2.2
|
0.0
|
1.0
|
|
S2
|
E:FES302
|
2.2
|
0.0
|
1.0
|
|
CD1
|
E:LEU162
|
3.1
|
0.8
|
1.0
|
|
ND1
|
E:HIS181
|
3.1
|
0.3
|
1.0
|
|
FE1
|
E:FES302
|
3.1
|
0.0
|
1.0
|
|
CB
|
E:HIS181
|
3.2
|
0.3
|
1.0
|
|
SG
|
E:CYS178
|
3.4
|
0.7
|
1.0
|
|
CG
|
E:HIS181
|
3.5
|
0.3
|
1.0
|
|
N
|
E:HIS181
|
3.5
|
0.3
|
1.0
|
|
CB
|
E:CYS180
|
3.6
|
0.0
|
1.0
|
|
CA
|
E:HIS181
|
3.9
|
0.3
|
1.0
|
|
ND1
|
E:HIS161
|
4.0
|
1.0
|
1.0
|
|
C
|
E:CYS180
|
4.1
|
0.0
|
1.0
|
|
CB
|
E:HIS161
|
4.1
|
1.0
|
1.0
|
|
CE1
|
E:HIS181
|
4.2
|
0.3
|
1.0
|
|
CG
|
E:LEU162
|
4.4
|
0.8
|
1.0
|
|
CA
|
E:CYS180
|
4.4
|
0.0
|
1.0
|
|
CG
|
E:HIS161
|
4.5
|
1.0
|
1.0
|
|
CB
|
E:LEU162
|
4.6
|
0.8
|
1.0
|
|
N
|
E:LEU162
|
4.7
|
0.8
|
1.0
|
|
CD2
|
E:HIS181
|
4.7
|
0.3
|
1.0
|
|
SG
|
E:CYS164
|
4.8
|
0.6
|
1.0
|
|
C
|
E:HIS181
|
4.8
|
0.3
|
1.0
|
|
CB
|
E:CYS164
|
4.9
|
0.6
|
1.0
|
|
CB
|
E:CYS178
|
4.9
|
0.7
|
1.0
|
|
OG
|
E:SER183
|
4.9
|
0.9
|
1.0
|
|
O
|
E:CYS180
|
4.9
|
0.0
|
1.0
|
|
N
|
E:CYS180
|
5.0
|
0.0
|
1.0
|
|
SG
|
E:CYS180
|
5.0
|
0.0
|
1.0
|
|
Iron binding site 8 out
of 12 in 6ymx
Go back to
Iron Binding Sites List in 6ymx
Iron binding site 8 out
of 12 in the CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe401
b:57.8
occ:1.00
|
FE
|
N:HEM401
|
0.0
|
57.8
|
1.0
|
|
NA
|
N:HEM401
|
1.9
|
57.8
|
1.0
|
|
NB
|
N:HEM401
|
2.0
|
57.8
|
1.0
|
|
ND
|
N:HEM401
|
2.0
|
57.8
|
1.0
|
|
NC
|
N:HEM401
|
2.1
|
57.8
|
1.0
|
|
NE2
|
N:HIS82
|
2.7
|
57.5
|
1.0
|
|
NE2
|
N:HIS183
|
2.7
|
54.3
|
1.0
|
|
C1A
|
N:HEM401
|
2.9
|
57.8
|
1.0
|
|
C4A
|
N:HEM401
|
3.0
|
57.8
|
1.0
|
|
CE1
|
N:HIS183
|
3.0
|
54.3
|
1.0
|
|
C4B
|
N:HEM401
|
3.0
|
57.8
|
1.0
|
|
C1B
|
N:HEM401
|
3.0
|
57.8
|
1.0
|
|
C4D
|
N:HEM401
|
3.0
|
57.8
|
1.0
|
|
C1C
|
N:HEM401
|
3.0
|
57.8
|
1.0
|
|
CD2
|
N:HIS82
|
3.1
|
57.5
|
1.0
|
|
C1D
|
N:HEM401
|
3.1
|
57.8
|
1.0
|
|
C4C
|
N:HEM401
|
3.1
|
57.8
|
1.0
|
|
CHA
|
N:HEM401
|
3.3
|
57.8
|
1.0
|
|
CHB
|
N:HEM401
|
3.4
|
57.8
|
1.0
|
|
CHC
|
N:HEM401
|
3.4
|
57.8
|
1.0
|
|
CHD
|
N:HEM401
|
3.5
|
57.8
|
1.0
|
|
CE1
|
N:HIS82
|
3.9
|
57.5
|
1.0
|
|
CD2
|
N:HIS183
|
4.0
|
54.3
|
1.0
|
|
C2A
|
N:HEM401
|
4.1
|
57.8
|
1.0
|
|
C3A
|
N:HEM401
|
4.1
|
57.8
|
1.0
|
|
C3B
|
N:HEM401
|
4.2
|
57.8
|
1.0
|
|
C2B
|
N:HEM401
|
4.2
|
57.8
|
1.0
|
|
C3D
|
N:HEM401
|
4.3
|
57.8
|
1.0
|
|
C2C
|
N:HEM401
|
4.3
|
57.8
|
1.0
|
|
ND1
|
N:HIS183
|
4.3
|
54.3
|
1.0
|
|
C2D
|
N:HEM401
|
4.3
|
57.8
|
1.0
|
|
C3C
|
N:HEM401
|
4.3
|
57.8
|
1.0
|
|
CG
|
N:HIS82
|
4.4
|
57.5
|
1.0
|
|
ND1
|
N:HIS82
|
4.8
|
57.5
|
1.0
|
|
CA
|
N:GLY131
|
4.8
|
59.4
|
1.0
|
|
CG
|
N:HIS183
|
4.8
|
54.3
|
1.0
|
|
Iron binding site 9 out
of 12 in 6ymx
Go back to
Iron Binding Sites List in 6ymx
Iron binding site 9 out
of 12 in the CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe402
b:57.0
occ:1.00
|
FE
|
N:HEM402
|
0.0
|
57.0
|
1.0
|
|
NB
|
N:HEM402
|
1.9
|
57.0
|
1.0
|
|
NA
|
N:HEM402
|
2.0
|
57.0
|
1.0
|
|
NC
|
N:HEM402
|
2.0
|
57.0
|
1.0
|
|
ND
|
N:HEM402
|
2.0
|
57.0
|
1.0
|
|
NE2
|
N:HIS197
|
2.7
|
57.1
|
1.0
|
|
NE2
|
N:HIS96
|
2.7
|
56.8
|
1.0
|
|
C1B
|
N:HEM402
|
2.9
|
57.0
|
1.0
|
|
C4B
|
N:HEM402
|
3.0
|
57.0
|
1.0
|
|
C4A
|
N:HEM402
|
3.0
|
57.0
|
1.0
|
|
C1C
|
N:HEM402
|
3.0
|
57.0
|
1.0
|
|
C1A
|
N:HEM402
|
3.0
|
57.0
|
1.0
|
|
C4D
|
N:HEM402
|
3.0
|
57.0
|
1.0
|
|
C4C
|
N:HEM402
|
3.0
|
57.0
|
1.0
|
|
C1D
|
N:HEM402
|
3.1
|
57.0
|
1.0
|
|
CD2
|
N:HIS197
|
3.3
|
57.1
|
1.0
|
|
CHB
|
N:HEM402
|
3.3
|
57.0
|
1.0
|
|
CD2
|
N:HIS96
|
3.3
|
56.8
|
1.0
|
|
CHC
|
N:HEM402
|
3.3
|
57.0
|
1.0
|
|
CHA
|
N:HEM402
|
3.4
|
57.0
|
1.0
|
|
CHD
|
N:HEM402
|
3.4
|
57.0
|
1.0
|
|
CE1
|
N:HIS96
|
3.6
|
56.8
|
1.0
|
|
CE1
|
N:HIS197
|
3.9
|
57.1
|
1.0
|
|
C2B
|
N:HEM402
|
4.2
|
57.0
|
1.0
|
|
C3A
|
N:HEM402
|
4.2
|
57.0
|
1.0
|
|
C3B
|
N:HEM402
|
4.2
|
57.0
|
1.0
|
|
C2A
|
N:HEM402
|
4.2
|
57.0
|
1.0
|
|
C2C
|
N:HEM402
|
4.2
|
57.0
|
1.0
|
|
C3C
|
N:HEM402
|
4.2
|
57.0
|
1.0
|
|
C3D
|
N:HEM402
|
4.2
|
57.0
|
1.0
|
|
C2D
|
N:HEM402
|
4.3
|
57.0
|
1.0
|
|
CG
|
N:HIS96
|
4.3
|
56.8
|
1.0
|
|
ND1
|
N:HIS96
|
4.4
|
56.8
|
1.0
|
|
CG
|
N:HIS197
|
4.6
|
57.1
|
1.0
|
|
ND1
|
N:HIS197
|
4.8
|
57.1
|
1.0
|
|
Iron binding site 10 out
of 12 in 6ymx
Go back to
Iron Binding Sites List in 6ymx
Iron binding site 10 out
of 12 in the CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Fe402
b:66.5
occ:1.00
|
FE
|
O:HEM402
|
0.0
|
66.5
|
1.0
|
|
NC
|
O:HEM402
|
2.0
|
66.5
|
1.0
|
|
ND
|
O:HEM402
|
2.0
|
66.5
|
1.0
|
|
NA
|
O:HEM402
|
2.0
|
66.5
|
1.0
|
|
NB
|
O:HEM402
|
2.0
|
66.5
|
1.0
|
|
NE2
|
O:HIS105
|
2.7
|
62.9
|
1.0
|
|
SD
|
O:MET225
|
3.0
|
70.9
|
1.0
|
|
C1C
|
O:HEM402
|
3.0
|
66.5
|
1.0
|
|
C1B
|
O:HEM402
|
3.0
|
66.5
|
1.0
|
|
C1D
|
O:HEM402
|
3.0
|
66.5
|
1.0
|
|
C4A
|
O:HEM402
|
3.0
|
66.5
|
1.0
|
|
C4C
|
O:HEM402
|
3.0
|
66.5
|
1.0
|
|
C4B
|
O:HEM402
|
3.0
|
66.5
|
1.0
|
|
C4D
|
O:HEM402
|
3.0
|
66.5
|
1.0
|
|
C1A
|
O:HEM402
|
3.0
|
66.5
|
1.0
|
|
CHC
|
O:HEM402
|
3.4
|
66.5
|
1.0
|
|
CHD
|
O:HEM402
|
3.4
|
66.5
|
1.0
|
|
CD2
|
O:HIS105
|
3.4
|
62.9
|
1.0
|
|
CHB
|
O:HEM402
|
3.4
|
66.5
|
1.0
|
|
CHA
|
O:HEM402
|
3.4
|
66.5
|
1.0
|
|
CE
|
O:MET225
|
3.5
|
70.9
|
1.0
|
|
CE1
|
O:HIS105
|
3.8
|
62.9
|
1.0
|
|
CG
|
O:MET225
|
3.8
|
70.9
|
1.0
|
|
CB
|
O:MET225
|
4.0
|
70.9
|
1.0
|
|
C2C
|
O:HEM402
|
4.2
|
66.5
|
1.0
|
|
C2B
|
O:HEM402
|
4.2
|
66.5
|
1.0
|
|
C3A
|
O:HEM402
|
4.2
|
66.5
|
1.0
|
|
C3C
|
O:HEM402
|
4.2
|
66.5
|
1.0
|
|
C2D
|
O:HEM402
|
4.2
|
66.5
|
1.0
|
|
C3D
|
O:HEM402
|
4.2
|
66.5
|
1.0
|
|
C2A
|
O:HEM402
|
4.2
|
66.5
|
1.0
|
|
C3B
|
O:HEM402
|
4.2
|
66.5
|
1.0
|
|
CG
|
O:HIS105
|
4.6
|
62.9
|
1.0
|
|
ND1
|
O:HIS105
|
4.8
|
62.9
|
1.0
|
|
Reference:
J.Berndtsson,
A.Aufschnaiter,
S.Rathore,
L.Marin-Buera,
H.Dawitz,
J.Diessl,
V.Kohler,
A.Barrientos,
S.Buttner,
F.Fontanesi,
M.Ott.
Mitochondrial Respiratory Supercomplex Formation Improves Bioenergetics and Confers A Selectable Fitness Advantage To Be Published.
Page generated: Sun Dec 13 17:38:07 2020
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