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Iron in PDB, part 238 (files: 9481-9520), PDB 6ydi-6z9g

Experimental structures of coordination spheres of Iron (Fe) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Iron atoms. PDB files: 9481-9520 (PDB 6ydi-6z9g).
  1. 6ydi (Fe: 2) - Xfel Structure of the Soluble Methane Monooxygenase Hydroxylase and Regulatory Subunit Complex, From Methylosinus Trichosporium OB3B, Diferrous State
  2. 6ydu (Fe: 2) - Xfel Structure of the Soluble Methane Monooxygenase Hydroxylase and Regulatory Subunit Complex, From Methylosinus Trichosporium OB3B, Reoxidized Diferric State, 10S O2 Exposure.
  3. 6yez (Fe: 14) - Plant Psi-Ferredoxin-Plastocyanin Supercomplex
    Other atoms: Mg (157); Ca (2); Cu (1);
  4. 6yf4 (Fe: 40) - [Fefe]-Hydrogenase I From Clostridium Pasteurianum (Cpi), Variant E279D
    Other atoms: Mg (3);
  5. 6yj4 (Fe: 28) - Structure of Yarrowia Lipolytica Complex I at 2.7 A
    Other atoms: Zn (1);
  6. 6yka (Fe: 1) - Asymmetric [Fe]-Hydrogenase From Methanolacinia Paynteri Apo and in Complex with Fegp at 2.1-A Resolution
  7. 6ymx (Fe: 12) - CIII2/Civ Respiratory Supercomplex From Saccharomyces Cerevisiae
    Other atoms: Zn (1); Cu (3);
  8. 6ymy (Fe: 2) - Cytochrome C Oxidase From Saccharomyces Cerevisiae
    Other atoms: Zn (1); Cu (3);
  9. 6yom (Fe: 2) - Crystal Structure of Tetrameric Human D137N-SAMHD1 (Residues 109-626) with Xtp, Datp, Dcmpnpp, Mn and Mg
    Other atoms: Mg (4); Mn (2);
  10. 6yp7 (Fe: 4) - Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions
    Other atoms: Mg (198); Mn (8); Ca (2); Cl (4);
  11. 6ypv (Fe: 1) - Alpha-Ketoglutarate-Dependent Dioxygenase Alkb in Complex with Fe and Akg After Oxygen Exposure Using Ft-Ssx Methods
  12. 6yr4 (Fe: 6) - Dye-Type Peroxidase Dtpb in the Ferryl State: Spectroscopically Validated Composite Structure
    Other atoms: Mg (2);
  13. 6yrc (Fe: 6) - Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State
    Other atoms: Mg (5);
  14. 6yrd (Fe: 6) - Sfx Structure of Dye-Type Peroxidase Dtpb in the Ferryl State
    Other atoms: Mg (2);
  15. 6yrj (Fe: 6) - Sfx Structure of Dye-Type Peroxidase Dtpb in the Ferric State
    Other atoms: Mg (1);
  16. 6ytt (Fe: 28) - Co-Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) From Clostridium Autoethanogenum at 3.0-A Resolution
    Other atoms: F (9); Ni (6); Na (6);
  17. 6yu9 (Fe: 40) - Co-Dehydrogenase Homodimer From Clostridium Autoethanogenum at 1.90-A Resolution
    Other atoms: Ni (4); Cl (1);
  18. 6yua (Fe: 20) - Co-Dehydrogenase Coupled to the N-Terminal Domain of the Acetyl-Coa Synthase From Clostridium Autoethanogenum Isolated After Tryptic Digestion.
    Other atoms: Ni (2); Mg (4);
  19. 6yvw (Fe: 1) - Hif Prolyl Hydroxylase 2 (PHD2/ EGLN1) in Complex with Monocyclic Bb- 328
    Other atoms: Br (1);
  20. 6yw0 (Fe: 1) - Lysine-N,N-Dimethylated Hif Prolyl Hydroxylase 2 (PHD2/ EGLN1) in Complex with Bb-287
  21. 6yxr (Fe: 12) - Dunaliella Minimal Photosystem I
    Other atoms: Mg (145);
  22. 6yy3 (Fe: 2) - Xfel Structure of the Soluble Methane Monooxygenase Hydroxylase and Regulatory Subunit Complex, From Methylosinus Trichosporium OB3B, T=0 Diferrous State Prior to Oxygen Activation
  23. 6z02 (Fe: 1) - Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv in Surfo Crystallization
    Other atoms: Mg (4); K (1); Na (1);
  24. 6z1j (Fe: 1) - Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv Lsp Co-Crystallization with Spheroidene
    Other atoms: Mg (4);
  25. 6z1m (Fe: 3) - Structure of An Ancestral Glycosidase (Family 1) Bound to Heme
    Other atoms: Mg (1);
  26. 6z27 (Fe: 1) - Photosynthetic Reaction Center From Rhodobacter Sphaeroides Strain Rv Lcp Crystallization
    Other atoms: Mg (4);
  27. 6z4r (Fe: 1) - Sperm Whale Myoglobin Mutant (H64V V64A) Bearing the Non-Canonical Amino Acid 3-Thienylalanine As Axial Heme Ligand
  28. 6z4t (Fe: 1) - Sperm Whale Myoglobin Mutant (H64V V64A) Bearing the Non-Canonical Amino Acid 2-Amino-3-(Thiazol-5-Yl)Propanoic Acid As Axial Heme Ligand
  29. 6z5r (Fe: 1) - Rc-LH1(16) Complex From Rhodopseudomonas Palustris
    Other atoms: Mg (36);
  30. 6z5s (Fe: 1) - Rc-LH1(14)-W Complex From Rhodopseudomonas Palustris
    Other atoms: Mg (32);
  31. 6z7r (Fe: 36) - Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure WTKR1
    Other atoms: Ni (2); Kr (42); Cl (2);
  32. 6z8a (Fe: 1) - Outer Membrane Foxa in Complex with Nocardamine
  33. 6z8j (Fe: 36) - Structure of [Nifese] Hydrogenase From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure WTO2
    Other atoms: Ni (2); Cl (2);
  34. 6z8m (Fe: 18) - Structure of [Nifese] Hydrogenase G491S Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491S- O2
    Other atoms: Ni (2); Cl (1);
  35. 6z8o (Fe: 36) - Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Krypton Gas - Structure G491A-Kr
    Other atoms: Ni (2); Kr (20); Cl (2);
  36. 6z92 (Fe: 8) - [4FE-4S]-Dependent Thiouracil Desulfidase Tuds (DUF523VCZ) Solved By Fe-Sad Phasing
  37. 6z93 (Fe: 8) - [4FE-4S]-Dependent Thiouracil Desulfidase Tuds (DUF523VCZ)
    Other atoms: Cl (2);
  38. 6z94 (Fe: 8) - [4FE-4S]-Dependent Thiouracil Desulfidase Tuds (DUF523VCZ)(S-Sad Data)
    Other atoms: Cl (3);
  39. 6z96 (Fe: 8) - [4FE-4S]-Dependent Thiouracil Desulfidase Tuds (DUF523VCZ) Soaked with 4-Thiouracil (12.65 Kev, 7.125 Kev (Fe-Sad) and 6.5 Kev (S-Sad) Data)
  40. 6z9g (Fe: 72) - Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2
    Other atoms: Ni (4); Cl (4);
Page generated: Mon Jul 12 13:51:13 2021

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