Iron in PDB 6yp7: Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions

All present enzymatic activity of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions:
1.10.3.9;

The structure of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions also contains other interesting chemical elements:

Magnesium	(Mg)	198 atoms
Manganese	(Mn)	8 atoms
Calcium	(Ca)	2 atoms
Chlorine	(Cl)	4 atoms

The binding sites of Iron atom in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions (pdb code 6yp7). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions, PDB code: 6yp7:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe402 b:0.4 occ:1.00 O a:LEU218 2.8 0.6 1.0 OG a:SER222 3.0 0.7 1.0 CA a:VAL219 3.2 0.4 1.0 CD2 a:TYR246 3.2 0.3 1.0 CE2 a:TYR246 3.3 0.3 1.0 C a:LEU218 3.4 0.6 1.0 CB a:ALA251 3.4 0.8 1.0 N a:VAL219 3.6 0.4 1.0 O a:VAL219 3.9 0.4 1.0 C a:VAL219 3.9 0.4 1.0 CG a:TYR246 4.0 0.3 1.0 CG2 a:VAL219 4.1 0.4 1.0 CB a:VAL219 4.1 0.4 1.0 CB a:SER222 4.2 0.7 1.0 CZ a:TYR246 4.2 0.3 1.0 CA a:LEU218 4.6 0.6 1.0 CG1 a:VAL219 4.7 0.4 1.0 CB a:TYR246 4.7 0.3 1.0 CB a:LEU218 4.7 0.6 1.0 O a:ASN247 4.8 1.0 1.0 CD1 a:TYR246 4.8 0.3 1.0 CA a:ALA251 4.8 0.8 1.0 CA a:ILE248 4.9 0.6 1.0 CE1 a:TYR246 4.9 0.3 1.0 OH a:TYR246 4.9 0.3 1.0

Iron binding site 2 out of 4 in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions within 5.0Å range: probe atom residue distance (Å) B Occ f:Fe101 b:1.0 occ:1.00 FE f:HEM101 0.0 1.0 1.0 ND f:HEM101 1.7 1.0 1.0 CD2 f:HIS18 2.1 0.9 1.0 CG f:HIS18 2.1 0.9 1.0 CB f:HIS18 2.2 0.9 1.0 NC f:HEM101 2.4 1.0 1.0 C1D f:HEM101 2.5 1.0 1.0 C4D f:HEM101 2.6 1.0 1.0 NA f:HEM101 2.6 1.0 1.0 CA f:HIS18 2.7 0.9 1.0 N f:HIS18 2.9 0.9 1.0 C1A f:HEM101 3.1 1.0 1.0 CHD f:HEM101 3.1 1.0 1.0 C4C f:HEM101 3.1 1.0 1.0 CHA f:HEM101 3.1 1.0 1.0 NB f:HEM101 3.2 1.0 1.0 NE2 f:HIS18 3.3 0.9 1.0 ND1 f:HIS18 3.4 0.9 1.0 C2D f:HEM101 3.6 1.0 1.0 C3D f:HEM101 3.6 1.0 1.0 C1C f:HEM101 3.6 1.0 1.0 C4A f:HEM101 3.7 1.0 1.0 C f:VAL17 3.8 0.2 1.0 CE1 f:HIS18 3.9 0.9 1.0 C4B f:HEM101 4.1 1.0 1.0 CHC f:HEM101 4.2 1.0 1.0 CG1 f:VAL17 4.2 0.2 1.0 C2A f:HEM101 4.2 1.0 1.0 C f:HIS18 4.2 0.9 1.0 C1B f:HEM101 4.2 1.0 1.0 CB f:VAL17 4.4 0.2 1.0 CHB f:HEM101 4.4 1.0 1.0 O f:VAL17 4.4 0.2 1.0 NE2 e:HIS23 4.4 0.5 1.0 C3C f:HEM101 4.4 1.0 1.0 C3A f:HEM101 4.5 1.0 1.0 C2C f:HEM101 4.7 1.0 1.0 O f:TRP14 4.7 0.8 1.0 CA f:VAL17 4.7 0.2 1.0 O f:HIS18 4.8 0.9 1.0 CMD f:HEM101 5.0 1.0 1.0 CE1 e:HIS23 5.0 0.5 1.0 CAD f:HEM101 5.0 1.0 1.0

Iron binding site 3 out of 4 in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe403 b:0.8 occ:1.00 O A:LEU218 2.8 0.4 1.0 OG A:SER222 3.0 0.4 1.0 CA A:VAL219 3.2 0.1 1.0 CD2 A:TYR246 3.2 0.1 1.0 CE2 A:TYR246 3.3 0.1 1.0 C A:LEU218 3.4 0.4 1.0 CB A:ALA251 3.4 0.5 1.0 N A:VAL219 3.6 0.1 1.0 O A:VAL219 3.9 0.1 1.0 C A:VAL219 3.9 0.1 1.0 CG A:TYR246 4.0 0.1 1.0 CG2 A:VAL219 4.1 0.1 1.0 CB A:VAL219 4.1 0.1 1.0 CB A:SER222 4.2 0.4 1.0 CZ A:TYR246 4.2 0.1 1.0 CA A:LEU218 4.6 0.4 1.0 CG1 A:VAL219 4.7 0.1 1.0 CB A:TYR246 4.7 0.1 1.0 CB A:LEU218 4.7 0.4 1.0 O A:ASN247 4.8 0.6 1.0 CD1 A:TYR246 4.8 0.1 1.0 CA A:ALA251 4.8 0.5 1.0 CA A:ILE248 4.9 1.0 1.0 CE1 A:TYR246 4.9 0.1 1.0 OH A:TYR246 4.9 0.1 1.0

Iron binding site 4 out of 4 in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe101 b:0.3 occ:1.00 FE F:HEM101 0.0 0.3 1.0 ND F:HEM101 1.7 0.3 1.0 CD2 F:HIS18 2.1 0.2 1.0 CG F:HIS18 2.1 0.2 1.0 CB F:HIS18 2.2 0.2 1.0 NC F:HEM101 2.4 0.3 1.0 C1D F:HEM101 2.5 0.3 1.0 C4D F:HEM101 2.6 0.3 1.0 NA F:HEM101 2.6 0.3 1.0 CA F:HIS18 2.7 0.2 1.0 N F:HIS18 2.9 0.2 1.0 C1A F:HEM101 3.1 0.3 1.0 CHD F:HEM101 3.1 0.3 1.0 C4C F:HEM101 3.1 0.3 1.0 CHA F:HEM101 3.1 0.3 1.0 NB F:HEM101 3.2 0.3 1.0 NE2 F:HIS18 3.3 0.2 1.0 ND1 F:HIS18 3.3 0.2 1.0 C2D F:HEM101 3.6 0.3 1.0 C3D F:HEM101 3.6 0.3 1.0 C1C F:HEM101 3.6 0.3 1.0 C4A F:HEM101 3.7 0.3 1.0 C F:VAL17 3.8 0.1 1.0 CE1 F:HIS18 3.9 0.2 1.0 C4B F:HEM101 4.1 0.3 1.0 CHC F:HEM101 4.2 0.3 1.0 CG1 F:VAL17 4.2 0.1 1.0 C2A F:HEM101 4.2 0.3 1.0 C F:HIS18 4.2 0.2 1.0 C1B F:HEM101 4.2 0.3 1.0 CB F:VAL17 4.4 0.1 1.0 CHB F:HEM101 4.4 0.3 1.0 O F:VAL17 4.4 0.1 1.0 C3C F:HEM101 4.4 0.3 1.0 C3A F:HEM101 4.5 0.3 1.0 C2C F:HEM101 4.7 0.3 1.0 NE2 E:HIS23 4.7 0.8 1.0 O F:TRP14 4.7 0.1 1.0 CA F:VAL17 4.7 0.1 1.0 O F:HIS18 4.8 0.2 1.0 CMD F:HEM101 5.0 0.3 1.0 CAD F:HEM101 5.0 0.3 1.0

A.Grinzato, P.Albanese, R.Marotta, P.Swuec, G.Saracco, M.Bolognesi, G.Zanotti, C.Pagliano. High-Light Versus Low-Light: Effects on Paired Photosystem II Supercomplex Structural Rearrangement in Pea Plants. Int J Mol Sci V. 21 2020.
ISSN: ESSN 1422-0067
PubMed: 33207833
DOI: 10.3390/IJMS21228643