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Iron in PDB 6yp7: Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions

Enzymatic activity of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions

All present enzymatic activity of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions:
1.10.3.9;

Other elements in 6yp7:

The structure of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions also contains other interesting chemical elements:

Magnesium (Mg) 198 atoms
Manganese (Mn) 8 atoms
Calcium (Ca) 2 atoms
Chlorine (Cl) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions (pdb code 6yp7). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions, PDB code: 6yp7:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 6yp7

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Iron binding site 1 out of 4 in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe402

b:0.4
occ:1.00
O a:LEU218 2.8 0.6 1.0
OG a:SER222 3.0 0.7 1.0
CA a:VAL219 3.2 0.4 1.0
CD2 a:TYR246 3.2 0.3 1.0
CE2 a:TYR246 3.3 0.3 1.0
C a:LEU218 3.4 0.6 1.0
CB a:ALA251 3.4 0.8 1.0
N a:VAL219 3.6 0.4 1.0
O a:VAL219 3.9 0.4 1.0
C a:VAL219 3.9 0.4 1.0
CG a:TYR246 4.0 0.3 1.0
CG2 a:VAL219 4.1 0.4 1.0
CB a:VAL219 4.1 0.4 1.0
CB a:SER222 4.2 0.7 1.0
CZ a:TYR246 4.2 0.3 1.0
CA a:LEU218 4.6 0.6 1.0
CG1 a:VAL219 4.7 0.4 1.0
CB a:TYR246 4.7 0.3 1.0
CB a:LEU218 4.7 0.6 1.0
O a:ASN247 4.8 1.0 1.0
CD1 a:TYR246 4.8 0.3 1.0
CA a:ALA251 4.8 0.8 1.0
CA a:ILE248 4.9 0.6 1.0
CE1 a:TYR246 4.9 0.3 1.0
OH a:TYR246 4.9 0.3 1.0

Iron binding site 2 out of 4 in 6yp7

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Iron binding site 2 out of 4 in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
f:Fe101

b:1.0
occ:1.00
FE f:HEM101 0.0 1.0 1.0
ND f:HEM101 1.7 1.0 1.0
CD2 f:HIS18 2.1 0.9 1.0
CG f:HIS18 2.1 0.9 1.0
CB f:HIS18 2.2 0.9 1.0
NC f:HEM101 2.4 1.0 1.0
C1D f:HEM101 2.5 1.0 1.0
C4D f:HEM101 2.6 1.0 1.0
NA f:HEM101 2.6 1.0 1.0
CA f:HIS18 2.7 0.9 1.0
N f:HIS18 2.9 0.9 1.0
C1A f:HEM101 3.1 1.0 1.0
CHD f:HEM101 3.1 1.0 1.0
C4C f:HEM101 3.1 1.0 1.0
CHA f:HEM101 3.1 1.0 1.0
NB f:HEM101 3.2 1.0 1.0
NE2 f:HIS18 3.3 0.9 1.0
ND1 f:HIS18 3.4 0.9 1.0
C2D f:HEM101 3.6 1.0 1.0
C3D f:HEM101 3.6 1.0 1.0
C1C f:HEM101 3.6 1.0 1.0
C4A f:HEM101 3.7 1.0 1.0
C f:VAL17 3.8 0.2 1.0
CE1 f:HIS18 3.9 0.9 1.0
C4B f:HEM101 4.1 1.0 1.0
CHC f:HEM101 4.2 1.0 1.0
CG1 f:VAL17 4.2 0.2 1.0
C2A f:HEM101 4.2 1.0 1.0
C f:HIS18 4.2 0.9 1.0
C1B f:HEM101 4.2 1.0 1.0
CB f:VAL17 4.4 0.2 1.0
CHB f:HEM101 4.4 1.0 1.0
O f:VAL17 4.4 0.2 1.0
NE2 e:HIS23 4.4 0.5 1.0
C3C f:HEM101 4.4 1.0 1.0
C3A f:HEM101 4.5 1.0 1.0
C2C f:HEM101 4.7 1.0 1.0
O f:TRP14 4.7 0.8 1.0
CA f:VAL17 4.7 0.2 1.0
O f:HIS18 4.8 0.9 1.0
CMD f:HEM101 5.0 1.0 1.0
CE1 e:HIS23 5.0 0.5 1.0
CAD f:HEM101 5.0 1.0 1.0

Iron binding site 3 out of 4 in 6yp7

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Iron binding site 3 out of 4 in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe403

b:0.8
occ:1.00
O A:LEU218 2.8 0.4 1.0
OG A:SER222 3.0 0.4 1.0
CA A:VAL219 3.2 0.1 1.0
CD2 A:TYR246 3.2 0.1 1.0
CE2 A:TYR246 3.3 0.1 1.0
C A:LEU218 3.4 0.4 1.0
CB A:ALA251 3.4 0.5 1.0
N A:VAL219 3.6 0.1 1.0
O A:VAL219 3.9 0.1 1.0
C A:VAL219 3.9 0.1 1.0
CG A:TYR246 4.0 0.1 1.0
CG2 A:VAL219 4.1 0.1 1.0
CB A:VAL219 4.1 0.1 1.0
CB A:SER222 4.2 0.4 1.0
CZ A:TYR246 4.2 0.1 1.0
CA A:LEU218 4.6 0.4 1.0
CG1 A:VAL219 4.7 0.1 1.0
CB A:TYR246 4.7 0.1 1.0
CB A:LEU218 4.7 0.4 1.0
O A:ASN247 4.8 0.6 1.0
CD1 A:TYR246 4.8 0.1 1.0
CA A:ALA251 4.8 0.5 1.0
CA A:ILE248 4.9 1.0 1.0
CE1 A:TYR246 4.9 0.1 1.0
OH A:TYR246 4.9 0.1 1.0

Iron binding site 4 out of 4 in 6yp7

Go back to Iron Binding Sites List in 6yp7
Iron binding site 4 out of 4 in the Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Psii-Lhcii C2S2 Supercomplex From Pisum Sativum Grown in High Light Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe101

b:0.3
occ:1.00
FE F:HEM101 0.0 0.3 1.0
ND F:HEM101 1.7 0.3 1.0
CD2 F:HIS18 2.1 0.2 1.0
CG F:HIS18 2.1 0.2 1.0
CB F:HIS18 2.2 0.2 1.0
NC F:HEM101 2.4 0.3 1.0
C1D F:HEM101 2.5 0.3 1.0
C4D F:HEM101 2.6 0.3 1.0
NA F:HEM101 2.6 0.3 1.0
CA F:HIS18 2.7 0.2 1.0
N F:HIS18 2.9 0.2 1.0
C1A F:HEM101 3.1 0.3 1.0
CHD F:HEM101 3.1 0.3 1.0
C4C F:HEM101 3.1 0.3 1.0
CHA F:HEM101 3.1 0.3 1.0
NB F:HEM101 3.2 0.3 1.0
NE2 F:HIS18 3.3 0.2 1.0
ND1 F:HIS18 3.3 0.2 1.0
C2D F:HEM101 3.6 0.3 1.0
C3D F:HEM101 3.6 0.3 1.0
C1C F:HEM101 3.6 0.3 1.0
C4A F:HEM101 3.7 0.3 1.0
C F:VAL17 3.8 0.1 1.0
CE1 F:HIS18 3.9 0.2 1.0
C4B F:HEM101 4.1 0.3 1.0
CHC F:HEM101 4.2 0.3 1.0
CG1 F:VAL17 4.2 0.1 1.0
C2A F:HEM101 4.2 0.3 1.0
C F:HIS18 4.2 0.2 1.0
C1B F:HEM101 4.2 0.3 1.0
CB F:VAL17 4.4 0.1 1.0
CHB F:HEM101 4.4 0.3 1.0
O F:VAL17 4.4 0.1 1.0
C3C F:HEM101 4.4 0.3 1.0
C3A F:HEM101 4.5 0.3 1.0
C2C F:HEM101 4.7 0.3 1.0
NE2 E:HIS23 4.7 0.8 1.0
O F:TRP14 4.7 0.1 1.0
CA F:VAL17 4.7 0.1 1.0
O F:HIS18 4.8 0.2 1.0
CMD F:HEM101 5.0 0.3 1.0
CAD F:HEM101 5.0 0.3 1.0

Reference:

A.Grinzato, P.Albanese, R.Marotta, P.Swuec, G.Saracco, M.Bolognesi, G.Zanotti, C.Pagliano. High-Light Versus Low-Light: Effects on Paired Photosystem II Supercomplex Structural Rearrangement in Pea Plants. Int J Mol Sci V. 21 2020.
ISSN: ESSN 1422-0067
PubMed: 33207833
DOI: 10.3390/IJMS21228643
Page generated: Wed Aug 7 16:41:51 2024

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