Iron »
PDB 6yj4-6zaf »
6yrc »
Iron in PDB 6yrc: Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State
Protein crystallography data
The structure of Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State, PDB code: 6yrc
was solved by
M.Lucic,
F.S.N.Dworkowski,
J.A.R.Worrall,
M.A.Hough,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 49.05 / 1.99 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 85.79, 120.27, 196.01, 90, 90, 90 |
| R / Rfree (%) | 17.6 / 21.8 |
Other elements in 6yrc:
The structure of Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State also contains other interesting chemical elements:
| Magnesium | (Mg) | 5 atoms |
Iron Binding Sites:
The binding sites of Iron atom in the Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State
(pdb code 6yrc). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State, PDB code: 6yrc:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Iron where determined in the Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State, PDB code: 6yrc:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;
Iron binding site 1 out of 6 in 6yrc
Go back to
Iron Binding Sites List in 6yrc
Iron binding site 1 out
of 6 in the Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State within 5.0Å range:
|
Iron binding site 2 out of 6 in 6yrc
Go back to
Iron Binding Sites List in 6yrc
Iron binding site 2 out
of 6 in the Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State within 5.0Å range:
|
Iron binding site 3 out of 6 in 6yrc
Go back to
Iron Binding Sites List in 6yrc
Iron binding site 3 out
of 6 in the Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State within 5.0Å range:
|
Iron binding site 4 out of 6 in 6yrc
Go back to
Iron Binding Sites List in 6yrc
Iron binding site 4 out
of 6 in the Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State within 5.0Å range:
|
Iron binding site 5 out of 6 in 6yrc
Go back to
Iron Binding Sites List in 6yrc
Iron binding site 5 out
of 6 in the Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State within 5.0Å range:
|
Iron binding site 6 out of 6 in 6yrc
Go back to
Iron Binding Sites List in 6yrc
Iron binding site 6 out
of 6 in the Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Spectroscopically-Validated Structure of Dtpb From Streptomyces Lividans in the Ferric State within 5.0Å range:
|
Reference:
M.Lucic,
D.A.Svistunenko,
M.T.Wilson,
A.K.Chaplin,
B.Davy,
A.Ebrahim,
D.Axford,
T.Tosha,
H.Sugimoto,
S.Owada,
F.S.N.Dworkowski,
I.Tews,
R.L.Owen,
M.A.Hough,
J.A.R.Worrall.
Serial Femtosecond Zero Dose Crystallography Captures A Water-Free Distal Heme Site in A Dye-Decolorising Peroxidase to Reveal A Catalytic Role For An Arginine in Fe IV =O Formation. Angew.Chem.Int.Ed.Engl. V. 59 21656 2020.
ISSN: ESSN 1521-3773
PubMed: 32780931
DOI: 10.1002/ANIE.202008622
Page generated: Wed Aug 7 16:41:49 2024
ISSN: ESSN 1521-3773
PubMed: 32780931
DOI: 10.1002/ANIE.202008622
Last articles
Zn in 9JYWZn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
