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Iron in PDB 6za1: Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd

Enzymatic activity of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd

All present enzymatic activity of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd:
1.12.7.2;

Protein crystallography data

The structure of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd, PDB code: 6za1 was solved by S.Zacarias, A.Temporao, P.Carpentier, P.Van Der Linden, I.A.C.Pereira, P.M.Matias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.95 / 1.37
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 106.156, 63.415, 110.044, 90.00, 104.79, 90.00
R / Rfree (%) 14.3 / 16.3

Other elements in 6za1:

The structure of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd also contains other interesting chemical elements:

Nickel (Ni) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Iron atom in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd (pdb code 6za1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 18 binding sites of Iron where determined in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd, PDB code: 6za1:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 18 in 6za1

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Iron binding site 1 out of 18 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:17.9
occ:1.00
FE1 A:SF4301 0.0 17.9 1.0
S4 A:SF4301 2.3 19.7 1.0
S3 A:SF4301 2.3 17.4 1.0
SG A:CYS238 2.3 17.5 1.0
S2 A:SF4301 2.3 19.3 1.0
FE4 A:SF4301 2.7 18.5 1.0
FE2 A:SF4301 2.8 18.4 1.0
FE3 A:SF4301 2.8 19.5 1.0
HB3 A:CYS238 3.0 23.6 1.0
CB A:CYS238 3.2 19.6 1.0
HB2 A:CYS238 3.5 23.6 1.0
HD3 A:PRO241 3.6 19.6 1.0
HB2 A:ARG233 3.7 21.0 1.0
HA3 A:GLY240 3.8 23.2 1.0
H A:GLY240 3.8 22.4 1.0
HG11 A:VAL260 3.9 23.0 1.0
S1 A:SF4301 4.0 20.4 1.0
H A:ARG233 4.1 22.9 1.0
HG13 A:VAL260 4.1 23.0 1.0
HG22 A:VAL260 4.2 23.2 1.0
HG21 A:VAL260 4.4 23.2 1.0
N A:GLY240 4.5 18.6 1.0
CG1 A:VAL260 4.5 19.1 1.0
CA A:CYS238 4.5 17.9 1.0
CA A:GLY240 4.6 19.3 1.0
CD A:PRO241 4.6 16.3 1.0
HA A:TYR234 4.6 25.3 1.0
CB A:ARG233 4.7 17.5 1.0
HB2 A:HIS208 4.7 22.7 1.0
SG A:CYS232 4.7 20.9 1.0
SG A:CYS211 4.7 18.9 1.0
ND1 A:HIS208 4.7 19.0 1.0
CG2 A:VAL260 4.7 19.3 1.0
C A:CYS238 4.8 16.5 1.0
N A:TYR234 4.8 20.8 1.0
H A:TYR234 4.8 25.0 1.0
HB2 A:TYR234 4.8 27.0 1.0
N A:ARG233 4.8 19.1 1.0
HD2 A:PRO241 4.9 19.6 1.0
HA A:HIS208 4.9 19.2 1.0
C A:ARG233 4.9 19.8 1.0
O A:CYS238 4.9 18.4 1.0
HA A:CYS238 4.9 21.5 1.0
HB3 A:ARG233 5.0 21.0 1.0
HD3 A:ARG233 5.0 22.0 1.0

Iron binding site 2 out of 18 in 6za1

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Iron binding site 2 out of 18 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:18.4
occ:1.00
FE2 A:SF4301 0.0 18.4 1.0
ND1 A:HIS208 2.1 19.0 1.0
S3 A:SF4301 2.3 17.4 1.0
S4 A:SF4301 2.3 19.7 1.0
S1 A:SF4301 2.3 20.4 1.0
FE4 A:SF4301 2.7 18.5 1.0
FE3 A:SF4301 2.7 19.5 1.0
FE1 A:SF4301 2.8 17.9 1.0
CE1 A:HIS208 3.0 22.7 1.0
HB2 A:HIS208 3.1 22.7 1.0
CG A:HIS208 3.1 18.3 1.0
HE1 A:HIS208 3.1 27.3 1.0
HA A:HIS208 3.3 19.2 1.0
HD3 A:PRO241 3.4 19.6 1.0
CB A:HIS208 3.5 18.9 1.0
HG3 A:PRO241 3.7 25.6 1.0
S2 A:SF4301 3.9 19.3 1.0
CA A:HIS208 3.9 16.1 1.0
HB3 A:CYS211 4.1 23.1 1.0
NE2 A:HIS208 4.1 24.1 1.0
CD A:PRO241 4.2 16.3 1.0
CD2 A:HIS208 4.2 22.5 1.0
HB2 A:CYS211 4.2 23.1 1.0
HA3 A:GLY240 4.2 23.2 1.0
CG A:PRO241 4.4 21.3 1.0
HB2 A:TYR217 4.4 29.2 1.0
HD13 A:LEU214 4.4 29.6 1.0
HB3 A:HIS208 4.4 22.7 1.0
HD1 A:TYR217 4.4 32.5 1.0
CB A:CYS211 4.5 19.2 1.0
O A:HIS208 4.6 18.3 1.0
SG A:CYS211 4.6 18.9 1.0
SG A:CYS232 4.6 20.9 1.0
CD1 A:TYR217 4.7 27.1 1.0
C A:HIS208 4.7 17.2 1.0
HD12 A:LEU214 4.7 29.6 1.0
N A:PRO241 4.8 17.2 1.0
SG A:CYS238 4.8 17.5 1.0
HA A:LEU214 4.9 27.9 1.0
HG2 A:PRO241 4.9 25.6 1.0
HB2 A:TYR234 4.9 27.0 1.0
HE2 A:HIS208 4.9 28.9 1.0
HD2 A:PRO241 4.9 19.6 1.0
CG A:TYR217 5.0 25.9 1.0

Iron binding site 3 out of 18 in 6za1

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Iron binding site 3 out of 18 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:19.5
occ:1.00
FE3 A:SF4301 0.0 19.5 1.0
SG A:CYS232 2.3 20.9 1.0
S2 A:SF4301 2.3 19.3 1.0
S1 A:SF4301 2.3 20.4 1.0
S4 A:SF4301 2.3 19.7 1.0
FE2 A:SF4301 2.7 18.4 1.0
FE4 A:SF4301 2.8 18.5 1.0
FE1 A:SF4301 2.8 17.9 1.0
H A:ARG233 3.1 22.9 1.0
HB2 A:TYR217 3.4 29.2 1.0
CB A:CYS232 3.5 20.9 1.0
HB2 A:CYS232 3.5 25.1 1.0
HD1 A:TYR217 3.7 32.5 1.0
H A:TYR234 3.7 25.0 1.0
HA A:CYS232 3.7 25.6 1.0
HB2 A:TYR234 3.7 27.0 1.0
N A:ARG233 3.8 19.1 1.0
HB2 A:TYR213 3.9 25.8 1.0
S3 A:SF4301 3.9 17.4 1.0
CA A:CYS232 4.0 21.3 1.0
N A:TYR234 4.2 20.8 1.0
HB3 A:CYS232 4.3 25.1 1.0
CB A:TYR217 4.3 24.3 1.0
HE1 A:HIS208 4.3 27.3 1.0
CD1 A:TYR217 4.3 27.1 1.0
HB2 A:ARG233 4.3 21.0 1.0
C A:CYS232 4.3 21.3 1.0
ND1 A:HIS208 4.4 19.0 1.0
HB3 A:CYS238 4.5 23.6 1.0
CB A:TYR234 4.6 22.5 1.0
O A:TYR213 4.7 23.3 1.0
CA A:ARG233 4.7 18.9 1.0
CB A:TYR213 4.7 21.4 1.0
CG A:TYR217 4.7 25.9 1.0
CE1 A:HIS208 4.7 22.7 1.0
HB3 A:TYR217 4.7 29.2 1.0
HA A:TYR234 4.8 25.3 1.0
C A:ARG233 4.8 19.8 1.0
HD3 A:ARG233 4.8 22.0 1.0
HB3 A:TYR213 4.8 25.8 1.0
CA A:TYR234 4.8 21.1 1.0
HA A:LEU214 4.8 27.9 1.0
SG A:CYS211 4.8 18.9 1.0
SG A:CYS238 4.9 17.5 1.0
HB3 A:TYR234 4.9 27.0 1.0
H A:TYR217 4.9 28.8 1.0
C A:TYR213 5.0 24.2 1.0

Iron binding site 4 out of 18 in 6za1

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Iron binding site 4 out of 18 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:18.5
occ:1.00
FE4 A:SF4301 0.0 18.5 1.0
SG A:CYS211 2.3 18.9 1.0
S1 A:SF4301 2.3 20.4 1.0
S3 A:SF4301 2.3 17.4 1.0
S2 A:SF4301 2.3 19.3 1.0
FE2 A:SF4301 2.7 18.4 1.0
FE1 A:SF4301 2.7 17.9 1.0
FE3 A:SF4301 2.8 19.5 1.0
HB3 A:CYS211 3.0 23.1 1.0
CB A:CYS211 3.1 19.2 1.0
HB2 A:CYS211 3.1 23.1 1.0
HB2 A:TYR213 3.3 25.8 1.0
HG11 A:VAL260 3.4 23.0 1.0
HD2 A:TYR213 3.6 24.7 1.0
S4 A:SF4301 3.9 19.7 1.0
HA A:HIS208 3.9 19.2 1.0
H A:TYR213 3.9 25.1 1.0
CG1 A:VAL260 4.2 19.1 1.0
CB A:TYR213 4.2 21.4 1.0
HG13 A:VAL260 4.3 23.0 1.0
ND1 A:HIS208 4.4 19.0 1.0
CD2 A:TYR213 4.5 20.6 1.0
CA A:CYS211 4.5 20.7 1.0
HG21 A:VAL260 4.6 23.2 1.0
N A:TYR213 4.6 20.9 1.0
HG12 A:VAL260 4.6 23.0 1.0
C A:TYR213 4.6 24.2 1.0
H A:ARG233 4.7 22.9 1.0
CA A:TYR213 4.7 19.8 1.0
N A:LEU214 4.8 22.1 1.0
HA A:LEU214 4.8 27.9 1.0
SG A:CYS238 4.8 17.5 1.0
HG22 A:ILE207 4.8 23.0 1.0
CA A:HIS208 4.8 16.1 1.0
HA A:CYS211 4.8 24.9 1.0
HB3 A:TYR213 4.9 25.8 1.0
H A:LEU214 4.9 26.6 1.0
CG A:TYR213 4.9 22.2 1.0
HB2 A:HIS208 4.9 22.7 1.0
SG A:CYS232 4.9 20.9 1.0
C A:CYS211 5.0 22.4 1.0

Iron binding site 5 out of 18 in 6za1

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Iron binding site 5 out of 18 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe302

b:16.0
occ:1.00
FE1 A:SF4302 0.0 16.0 1.0
SG A:CYS268 2.3 16.0 1.0
S4 A:SF4302 2.3 16.3 1.0
S2 A:SF4302 2.3 16.4 1.0
S3 A:SF4302 2.3 16.4 1.0
FE3 A:SF4302 2.7 16.5 1.0
FE2 A:SF4302 2.8 16.2 1.0
FE4 A:SF4302 2.8 15.9 1.0
H A:CYS268 2.9 16.6 1.0
HB3 A:CYS268 3.3 18.9 1.0
CB A:CYS268 3.4 15.7 1.0
N A:CYS268 3.7 13.8 1.0
HH12 B:ARG182 3.7 22.9 1.0
HG13 A:VAL269 3.7 19.1 1.0
HH22 B:ARG182 3.8 23.9 1.0
S1 A:SF4302 3.9 16.5 1.0
CA A:CYS268 4.0 13.5 1.0
NH1 B:ARG182 4.1 19.1 1.0
NH2 B:ARG182 4.1 19.9 1.0
H A:VAL269 4.1 16.5 1.0
HB2 A:CYS268 4.2 18.9 1.0
CZ B:ARG182 4.3 19.3 1.0
HH11 B:ARG182 4.5 22.9 1.0
HH2 A:TRP165 4.5 19.7 1.0
N A:VAL269 4.5 13.7 1.0
H A:GLY267 4.6 17.6 1.0
HH21 B:ARG182 4.6 23.9 1.0
C A:CYS268 4.6 14.9 1.0
HG22 A:VAL269 4.6 18.8 1.0
H A:ILE266 4.6 17.7 1.0
CG1 A:VAL269 4.7 15.8 1.0
HG21 A:THR243 4.7 17.7 1.0
HZ2 A:TRP252 4.7 18.4 1.0
H A:CYS159 4.8 16.7 1.0
HG12 A:ILE266 4.8 22.6 1.0
C A:GLY267 4.8 15.8 1.0
SG A:CYS259 4.8 15.8 1.0
SG A:CYS265 4.8 16.3 1.0
SG A:CYS247 4.8 16.4 1.0
HA2 A:GLY158 4.9 18.6 1.0
HG11 A:VAL269 4.9 19.1 1.0
HA A:CYS268 4.9 16.3 1.0
N A:GLY267 4.9 14.6 1.0
HG13 A:ILE266 5.0 22.6 1.0
HE21 B:GLN187 5.0 21.3 1.0
HA2 A:GLY267 5.0 19.8 1.0

Iron binding site 6 out of 18 in 6za1

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Iron binding site 6 out of 18 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe302

b:16.2
occ:1.00
FE2 A:SF4302 0.0 16.2 1.0
S3 A:SF4302 2.3 16.4 1.0
SG A:CYS265 2.3 16.3 1.0
S1 A:SF4302 2.3 16.5 1.0
S4 A:SF4302 2.3 16.3 1.0
FE3 A:SF4302 2.7 16.5 1.0
FE1 A:SF4302 2.8 16.0 1.0
FE4 A:SF4302 2.8 15.9 1.0
CB A:CYS265 3.3 16.0 1.0
HB2 A:CYS265 3.3 19.2 1.0
H A:GLY267 3.3 17.6 1.0
HA A:CYS265 3.3 16.1 1.0
HD12 A:ILE207 3.3 37.8 1.0
HD11 A:ILE207 3.5 37.8 1.0
HG21 A:THR243 3.5 17.7 1.0
H A:ILE266 3.6 17.7 1.0
H A:CYS268 3.7 16.6 1.0
CD1 A:ILE207 3.7 31.4 1.0
CA A:CYS265 3.8 13.4 1.0
HD13 A:ILE207 3.9 37.8 1.0
S2 A:SF4302 3.9 16.4 1.0
HB2 A:CYS259 4.1 20.7 1.0
N A:GLY267 4.1 14.6 1.0
N A:ILE266 4.1 14.8 1.0
HB3 A:CYS265 4.2 19.2 1.0
HA2 A:GLY267 4.2 19.8 1.0
C A:CYS265 4.4 15.9 1.0
CG2 A:THR243 4.4 14.7 1.0
N A:CYS268 4.5 13.8 1.0
HG22 A:THR243 4.6 17.7 1.0
CA A:GLY267 4.6 16.5 1.0
SG A:CYS259 4.7 15.8 1.0
CB A:CYS259 4.8 17.2 1.0
SG A:CYS268 4.9 16.0 1.0
HB3 A:CYS259 4.9 20.7 1.0
SG A:CYS247 4.9 16.4 1.0
HG23 A:THR243 4.9 17.7 1.0
HG23 A:VAL260 5.0 23.2 1.0
HB2 A:CYS247 5.0 19.9 1.0
HG21 A:ILE207 5.0 23.0 1.0

Iron binding site 7 out of 18 in 6za1

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Iron binding site 7 out of 18 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe302

b:16.5
occ:1.00
FE3 A:SF4302 0.0 16.5 1.0
S2 A:SF4302 2.3 16.4 1.0
SG A:CYS259 2.3 15.8 1.0
S4 A:SF4302 2.3 16.3 1.0
S1 A:SF4302 2.3 16.5 1.0
FE4 A:SF4302 2.7 15.9 1.0
FE1 A:SF4302 2.7 16.0 1.0
FE2 A:SF4302 2.7 16.2 1.0
HB2 A:CYS259 2.8 20.7 1.0
CB A:CYS259 3.1 17.2 1.0
HE21 B:GLN187 3.5 21.3 1.0
HB3 A:CYS259 3.5 20.7 1.0
S3 A:SF4302 3.8 16.4 1.0
HA A:CYS265 3.9 16.1 1.0
H A:CYS259 3.9 18.6 1.0
CZ B:ARG182 4.2 19.3 1.0
NE2 B:GLN187 4.2 17.7 1.0
HE1 A:TRP252 4.3 20.6 1.0
NH2 B:ARG182 4.3 19.9 1.0
HD3 B:ARG182 4.4 21.3 1.0
NE B:ARG182 4.4 19.9 1.0
HE22 B:GLN187 4.4 21.3 1.0
H A:ILE266 4.4 17.7 1.0
NH1 B:ARG182 4.4 19.1 1.0
CA A:CYS259 4.4 15.7 1.0
HH21 B:ARG182 4.5 23.9 1.0
HH22 B:ARG182 4.5 23.9 1.0
HE B:ARG182 4.6 23.9 1.0
N A:CYS259 4.6 15.4 1.0
HH12 B:ARG182 4.6 22.9 1.0
SG A:CYS247 4.6 16.4 1.0
HH11 B:ARG182 4.6 22.9 1.0
SG A:CYS268 4.7 16.0 1.0
NE1 A:TRP252 4.7 17.1 1.0
HB2 A:CYS265 4.7 19.2 1.0
SG A:CYS265 4.7 16.3 1.0
CA A:CYS265 4.8 13.4 1.0
HB3 A:CYS247 4.8 19.9 1.0
HG3 B:GLN187 4.8 21.4 1.0
CD B:ARG182 4.9 17.7 1.0
HG12 A:ILE266 4.9 22.6 1.0
HA A:CYS259 4.9 18.9 1.0
CB A:CYS265 5.0 16.0 1.0

Iron binding site 8 out of 18 in 6za1

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Iron binding site 8 out of 18 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe302

b:15.9
occ:1.00
FE4 A:SF4302 0.0 15.9 1.0
S1 A:SF4302 2.3 16.5 1.0
S2 A:SF4302 2.3 16.4 1.0
SG A:CYS247 2.3 16.4 1.0
S3 A:SF4302 2.3 16.4 1.0
FE3 A:SF4302 2.7 16.5 1.0
FE2 A:SF4302 2.8 16.2 1.0
FE1 A:SF4302 2.8 16.0 1.0
HB2 A:CYS247 3.2 19.9 1.0
CB A:CYS247 3.3 16.6 1.0
HD11 A:ILE207 3.3 37.8 1.0
HB3 A:CYS247 3.5 19.9 1.0
HE1 A:TRP252 3.5 20.6 1.0
HH2 A:TRP165 3.7 19.7 1.0
HD13 A:ILE207 3.8 37.8 1.0
HB3 A:ALA245 3.9 18.1 1.0
S4 A:SF4302 3.9 16.3 1.0
CD1 A:ILE207 3.9 31.4 1.0
HD12 A:ILE207 4.2 37.8 1.0
NE1 A:TRP252 4.3 17.1 1.0
HB1 A:ALA245 4.3 18.1 1.0
H A:CYS247 4.4 19.5 1.0
HZ2 A:TRP252 4.5 18.4 1.0
CB A:ALA245 4.5 15.0 1.0
CH2 A:TRP165 4.6 16.4 1.0
HE3 A:TRP258 4.7 20.9 1.0
CA A:CYS247 4.7 14.8 1.0
HB2 A:CYS259 4.7 20.7 1.0
SG A:CYS259 4.7 15.8 1.0
HB2 A:ALA245 4.7 18.1 1.0
HG13 A:VAL269 4.7 19.1 1.0
HZ2 A:TRP165 4.8 20.1 1.0
SG A:CYS268 4.8 16.0 1.0
SG A:CYS265 4.8 16.3 1.0
HG21 A:THR243 4.9 17.7 1.0
N A:CYS247 5.0 16.2 1.0

Iron binding site 9 out of 18 in 6za1

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Iron binding site 9 out of 18 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe303

b:12.7
occ:0.47
FE1 A:SF4303 0.0 12.7 0.5
FE1 A:6ML304 0.6 17.3 0.5
O12 A:6ML304 1.5 14.8 0.5
S3 A:6ML304 2.0 16.1 0.5
S2 A:SF4303 2.3 21.2 0.5
S4 A:SF4303 2.3 12.8 0.5
S3 A:SF4303 2.3 20.8 0.5
SG A:CYS18 2.4 17.0 1.0
S2 A:6ML304 2.5 13.1 0.5
FE3 A:SF4303 2.6 14.2 0.5
FE2 A:SF4303 2.6 12.8 0.5
FE4 A:SF4303 2.6 19.0 0.5
FE3 A:6ML304 2.8 15.8 0.5
H A:CYS18 2.8 19.2 1.0
FE2 A:6ML304 3.0 16.3 0.5
HB3 A:CYS18 3.2 18.9 1.0
O24 A:6ML304 3.3 15.3 0.5
FE4 A:6ML304 3.3 16.1 0.5
H A:GLY20 3.3 20.3 1.0
CB A:CYS18 3.4 15.7 1.0
HE2 B:HIS185 3.4 20.8 1.0
N A:CYS18 3.6 15.9 1.0
HA3 A:GLY20 3.7 23.1 1.0
S1 A:SF4303 3.8 17.9 0.5
S1 A:6ML304 3.9 17.0 0.5
CA A:CYS18 3.9 14.6 1.0
S4 A:6ML304 4.0 17.3 0.5
OE2 A:GLU77 4.0 28.7 0.5
N A:GLY20 4.1 16.8 1.0
HG3 B:ARG73 4.2 17.2 1.0
HB2 A:CYS18 4.2 18.9 1.0
NE2 B:HIS185 4.3 17.3 1.0
HA2 A:GLY17 4.3 25.1 1.0
H A:CYS21 4.3 19.2 0.5
CA A:GLY20 4.3 19.2 1.0
H A:THR19 4.4 18.7 1.0
C A:CYS18 4.4 16.0 1.0
H A:CYS21 4.4 19.2 0.5
N A:THR19 4.6 15.6 1.0
O B:HOH756 4.6 18.8 1.0
HA B:ARG73 4.6 17.3 1.0
C A:GLY17 4.6 19.6 1.0
HB3 B:ARG73 4.7 18.4 1.0
SG A:CYS159 4.8 15.2 1.0
SG A:CYS21 4.8 19.8 0.5
HA A:CYS18 4.8 17.5 1.0
CA A:GLY17 4.8 20.8 1.0
N A:CYS21 4.9 16.0 0.5
N A:CYS21 4.9 16.0 0.5
SG A:CYS121 4.9 17.4 1.0
HA3 A:GLY17 4.9 25.1 1.0
O B:ARG73 4.9 14.7 1.0
CG B:ARG73 4.9 14.3 1.0
HG2 B:ARG73 5.0 17.2 1.0

Iron binding site 10 out of 18 in 6za1

Go back to Iron Binding Sites List in 6za1
Iron binding site 10 out of 18 in the Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of [Nifese] Hydrogenase G491A Variant From Desulfovibrio Vulgaris Hildenborough Pressurized with Oxygen Gas - Structure G491A- O2-Hd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe303

b:12.8
occ:0.47
FE2 A:SF4303 0.0 12.8 0.5
FE4 A:6ML304 0.6 16.1 0.5
O24 A:6ML304 1.7 15.3 0.5
S3 A:6ML304 1.8 16.1 0.5
S1 A:SF4303 2.3 17.9 0.5
S3 A:SF4303 2.3 20.8 0.5
S4 A:SF4303 2.3 12.8 0.5
S4 A:6ML304 2.4 17.3 0.5
SG A:CYS121 2.5 17.4 1.0
FE3 A:6ML304 2.5 15.8 0.5
FE1 A:SF4303 2.6 12.7 0.5
FE3 A:SF4303 2.7 14.2 0.5
FE4 A:SF4303 2.8 19.0 0.5
FE2 A:6ML304 3.0 16.3 0.5
O12 A:6ML304 3.1 14.8 0.5
FE1 A:6ML304 3.1 17.3 0.5
HB2 A:CYS121 3.1 20.2 1.0
H A:CYS121 3.4 17.4 1.0
CB A:CYS121 3.4 16.8 1.0
HA2 A:GLY17 3.8 25.1 1.0
O A:HOH416 3.8 16.7 1.0
S2 A:6ML304 3.9 13.1 0.5
S2 A:SF4303 3.9 21.2 0.5
H A:CYS18 4.0 19.2 1.0
O B:HOH756 4.0 18.8 1.0
S1 A:6ML304 4.0 17.0 0.5
HB3 A:CYS121 4.1 20.2 1.0
N A:CYS121 4.2 14.4 1.0
O A:HOH515 4.2 18.9 1.0
HA2 A:GLY78 4.3 19.4 1.0
CA A:CYS121 4.4 14.2 1.0
OE2 A:GLU77 4.5 28.7 0.5
SG A:CYS159 4.5 15.2 1.0
H A:GLY78 4.6 19.1 1.0
HA3 A:GLY119 4.6 18.2 1.0
CA A:GLY17 4.6 20.8 1.0
N A:CYS18 4.7 15.9 1.0
HA3 A:GLY17 4.7 25.1 1.0
H A:THR120 4.8 18.1 1.0
SG A:CYS21 4.8 19.8 0.5
HB3 A:CYS18 4.8 18.9 1.0
HA A:CYS159 4.9 17.0 1.0
O A:GLN16 4.9 19.3 1.0
HA A:CYS121 4.9 17.1 1.0
SG A:CYS18 5.0 17.0 1.0

Reference:

S.Zacarias, A.Temporao, P.Carpentier, P.Van Der Linden, I.A.C.Pereira, P.M.Matias. Exploring the Gas Access Routes in A [Nifese] Hydrogenase Using Crystals Pressurized with Krypton and Oxygen. J.Biol.Inorg.Chem. V. 25 863 2020.
ISSN: ESSN 1432-1327
PubMed: 32865640
DOI: 10.1007/S00775-020-01814-Y
Page generated: Sun Dec 13 17:51:28 2020

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