Iron in PDB 7di8: Electron Crystallographic Structure of Catalase Using A Direct Electron Detector at 300 Kv

All present enzymatic activity of Electron Crystallographic Structure of Catalase Using A Direct Electron Detector at 300 Kv:
1.11.1.6;

The binding sites of Iron atom in the Electron Crystallographic Structure of Catalase Using A Direct Electron Detector at 300 Kv (pdb code 7di8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Electron Crystallographic Structure of Catalase Using A Direct Electron Detector at 300 Kv, PDB code: 7di8:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Electron Crystallographic Structure of Catalase Using A Direct Electron Detector at 300 Kv


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Electron Crystallographic Structure of Catalase Using A Direct Electron Detector at 300 Kv within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:50.1 occ:1.00 FE A:HEM601 0.0 50.1 1.0 NA A:HEM601 2.0 50.1 1.0 NB A:HEM601 2.0 50.4 1.0 NC A:HEM601 2.1 50.1 1.0 ND A:HEM601 2.1 50.3 1.0 OH A:TYR357 2.4 1.3 1.0 C4A A:HEM601 3.0 50.1 1.0 C1B A:HEM601 3.0 50.1 1.0 C4B A:HEM601 3.1 50.1 1.0 C1C A:HEM601 3.1 50.4 1.0 C1A A:HEM601 3.1 50.3 1.0 C4C A:HEM601 3.1 50.1 1.0 C4D A:HEM601 3.1 50.3 1.0 C1D A:HEM601 3.1 50.4 1.0 CHB A:HEM601 3.4 50.1 1.0 CHC A:HEM601 3.4 50.1 1.0 CHA A:HEM601 3.5 50.1 1.0 CZ A:TYR357 3.5 1.3 1.0 CHD A:HEM601 3.5 50.4 1.0 HZ A:PHE160 3.5 0.6 1.0 HG21 A:VAL73 3.7 0.3 1.0 HD2 A:HIS74 4.0 44.8 1.0 HE2 A:HIS74 4.0 44.8 1.0 HE2 A:TYR357 4.0 0.4 1.0 CZ A:PHE160 4.1 1.3 1.0 CE2 A:TYR357 4.2 1.1 1.0 HE A:ARG353 4.2 0.4 1.0 HG23 A:VAL73 4.2 0.3 1.0 C3A A:HEM601 4.3 50.3 1.0 C2B A:HEM601 4.3 50.4 1.0 C3B A:HEM601 4.3 50.4 1.0 HE1 A:TYR357 4.3 0.4 1.0 C2A A:HEM601 4.3 50.1 1.0 C2C A:HEM601 4.3 50.4 1.0 CE1 A:TYR357 4.3 1.1 1.0 HH21 A:ARG353 4.3 0.4 1.0 C3C A:HEM601 4.3 50.1 1.0 CG2 A:VAL73 4.3 1.1 1.0 C3D A:HEM601 4.4 50.3 1.0 C2D A:HEM601 4.4 50.1 1.0 HHA A:HEM601 4.4 60.3 1.0 HHB A:HEM601 4.4 60.3 1.0 HHC A:HEM601 4.4 60.4 1.0 NE2 A:HIS74 4.4 37.2 1.0 CD2 A:HIS74 4.4 37.2 1.0 HHD A:HEM601 4.5 60.6 1.0 HG22 A:VAL73 4.6 0.3 1.0 NE A:ARG353 4.6 1.1 1.0 HE1 A:PHE160 4.6 0.4 1.0 HE2 A:PHE160 4.7 0.4 1.0 CE1 A:PHE160 4.7 1.1 1.0 CE2 A:PHE160 4.7 1.1 1.0 NH2 A:ARG353 4.7 1.1 1.0 HG2 A:ARG353 4.9 0.4 1.0 CZ A:ARG353 5.0 1.1 1.0

Iron binding site 2 out of 4 in the Electron Crystallographic Structure of Catalase Using A Direct Electron Detector at 300 Kv


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Electron Crystallographic Structure of Catalase Using A Direct Electron Detector at 300 Kv within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:51.4 occ:1.00 FE B:HEM601 0.0 51.4 1.0 NC B:HEM601 2.1 51.4 1.0 NB B:HEM601 2.1 51.4 1.0 NA B:HEM601 2.1 51.4 1.0 ND B:HEM601 2.1 51.4 1.0 OH B:TYR357 2.4 4.8 1.0 C1B B:HEM601 3.0 51.4 1.0 C4A B:HEM601 3.0 51.4 1.0 C4C B:HEM601 3.1 51.4 1.0 C1C B:HEM601 3.1 51.4 1.0 C1D B:HEM601 3.1 51.4 1.0 C4B B:HEM601 3.1 51.6 1.0 C1A B:HEM601 3.1 51.3 1.0 C4D B:HEM601 3.1 51.3 1.0 CHB B:HEM601 3.4 51.4 1.0 CHD B:HEM601 3.4 51.4 1.0 CHC B:HEM601 3.5 51.4 1.0 CZ B:TYR357 3.5 4.8 1.0 CHA B:HEM601 3.5 51.3 1.0 HZ B:PHE160 3.6 0.5 1.0 HG21 B:VAL73 3.7 49.3 1.0 HE2 B:TYR357 4.0 5.9 1.0 HG23 B:VAL73 4.1 49.3 1.0 CZ B:PHE160 4.1 1.2 1.0 CE2 B:TYR357 4.2 4.8 1.0 HE B:ARG353 4.2 48.0 1.0 C2B B:HEM601 4.3 51.4 1.0 C3A B:HEM601 4.3 51.3 1.0 HD2 B:HIS74 4.3 36.5 1.0 C3C B:HEM601 4.3 51.6 1.0 C3B B:HEM601 4.3 51.4 1.0 C2C B:HEM601 4.3 51.4 1.0 C2A B:HEM601 4.3 51.3 1.0 C2D B:HEM601 4.3 51.3 1.0 C3D B:HEM601 4.3 51.3 1.0 CG2 B:VAL73 4.3 41.0 1.0 HHC B:HEM601 4.3 61.9 1.0 HHB B:HEM601 4.3 61.8 1.0 HE1 B:TYR357 4.4 5.9 1.0 CE1 B:TYR357 4.4 4.8 1.0 NE2 B:HIS74 4.4 30.0 1.0 HHD B:HEM601 4.4 61.8 1.0 HHA B:HEM601 4.4 61.8 1.0 HH21 B:ARG353 4.5 48.2 1.0 CD2 B:HIS74 4.5 30.2 1.0 NE B:ARG353 4.6 39.8 1.0 HE1 B:PHE160 4.6 0.5 1.0 CE1 B:PHE160 4.7 1.2 1.0 HG22 B:VAL73 4.7 49.3 1.0 NH2 B:ARG353 4.8 40.0 1.0 HG2 B:ARG353 4.8 48.0 1.0 HE2 B:PHE160 4.8 0.5 1.0 CE2 B:PHE160 4.8 1.2 1.0 CZ B:ARG353 4.9 39.8 1.0 HD2 B:ARG353 5.0 48.3 1.0

Iron binding site 3 out of 4 in the Electron Crystallographic Structure of Catalase Using A Direct Electron Detector at 300 Kv


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Electron Crystallographic Structure of Catalase Using A Direct Electron Detector at 300 Kv within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe601 b:40.3 occ:1.00 FE C:HEM601 0.0 40.3 1.0 NC C:HEM601 2.0 40.5 1.0 NA C:HEM601 2.0 40.3 1.0 ND C:HEM601 2.0 40.3 1.0 NB C:HEM601 2.1 40.5 1.0 OH C:TYR357 2.5 1.3 1.0 C1C C:HEM601 3.0 40.3 1.0 C4B C:HEM601 3.0 40.3 1.0 C1A C:HEM601 3.0 40.5 1.0 C4C C:HEM601 3.0 40.5 1.0 C4D C:HEM601 3.1 40.3 1.0 C1D C:HEM601 3.1 40.3 1.0 C4A C:HEM601 3.1 40.3 1.0 C1B C:HEM601 3.1 40.3 1.0 CHC C:HEM601 3.3 40.5 1.0 CHA C:HEM601 3.4 40.3 1.0 CHD C:HEM601 3.4 40.3 1.0 CHB C:HEM601 3.5 40.3 1.0 CZ C:TYR357 3.5 1.1 1.0 HZ C:PHE160 3.8 44.6 1.0 HE C:ARG353 3.8 0.4 1.0 HH21 C:ARG353 3.8 0.4 1.0 HE1 C:TYR357 4.0 0.6 1.0 HE2 C:HIS74 4.0 5.9 1.0 HD2 C:HIS74 4.1 5.6 1.0 CE1 C:TYR357 4.2 1.3 1.0 HHC C:HEM601 4.2 48.8 1.0 C2C C:HEM601 4.2 40.3 1.0 C3C C:HEM601 4.2 40.5 1.0 C3B C:HEM601 4.2 40.3 1.0 C2A C:HEM601 4.3 40.3 1.0 C2B C:HEM601 4.3 40.5 1.0 C3D C:HEM601 4.3 40.3 1.0 C2D C:HEM601 4.3 40.3 1.0 C3A C:HEM601 4.3 40.5 1.0 NE C:ARG353 4.3 1.1 1.0 NH2 C:ARG353 4.3 1.1 1.0 HHA C:HEM601 4.3 48.5 1.0 CZ C:PHE160 4.3 37.1 1.0 HE2 C:TYR357 4.4 0.4 1.0 CE2 C:TYR357 4.4 1.1 1.0 HHD C:HEM601 4.4 48.5 1.0 HHB C:HEM601 4.4 48.5 1.0 NE2 C:HIS74 4.5 4.8 1.0 CD2 C:HIS74 4.6 4.5 1.0 CZ C:ARG353 4.6 1.1 1.0 HE1 C:PHE160 4.8 44.7 1.0 HB C:VAL73 4.8 41.9 1.0 HH22 C:ARG353 4.8 0.4 1.0 CE1 C:PHE160 4.9 37.1 1.0 HG2 C:ARG353 5.0 0.6 1.0

Iron binding site 4 out of 4 in the Electron Crystallographic Structure of Catalase Using A Direct Electron Detector at 300 Kv


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Electron Crystallographic Structure of Catalase Using A Direct Electron Detector at 300 Kv within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe601 b:12.9 occ:1.00 FE D:HEM601 0.0 12.9 1.0 NC D:HEM601 2.0 12.9 1.0 ND D:HEM601 2.1 12.9 1.0 NA D:HEM601 2.1 12.9 1.0 NB D:HEM601 2.1 12.9 1.0 OH D:TYR357 2.4 1.3 1.0 C1C D:HEM601 3.1 12.9 1.0 C4C D:HEM601 3.1 12.9 1.0 C4D D:HEM601 3.1 13.1 1.0 C1D D:HEM601 3.1 12.9 1.0 C1A D:HEM601 3.1 12.9 1.0 C4B D:HEM601 3.1 13.1 1.0 C4A D:HEM601 3.1 12.9 1.0 C1B D:HEM601 3.1 12.9 1.0 CHC D:HEM601 3.4 12.9 1.0 CHD D:HEM601 3.4 12.9 1.0 CHA D:HEM601 3.5 12.9 1.0 CZ D:TYR357 3.5 1.1 1.0 CHB D:HEM601 3.5 12.9 1.0 HG21 D:VAL73 3.6 37.9 1.0 HZ D:PHE160 3.7 23.7 1.0 HH21 D:ARG353 3.8 0.3 1.0 HE D:ARG353 3.9 0.4 1.0 HE2 D:TYR357 3.9 0.3 1.0 HG23 D:VAL73 4.0 37.9 1.0 HE2 D:HIS74 4.0 63.2 1.0 CE2 D:TYR357 4.1 1.0 1.0 HD2 D:HIS74 4.2 63.2 1.0 CG2 D:VAL73 4.2 31.4 1.0 CZ D:PHE160 4.2 19.6 1.0 C2C D:HEM601 4.3 12.9 1.0 C3C D:HEM601 4.3 12.9 1.0 C3D D:HEM601 4.3 13.1 1.0 C2D D:HEM601 4.3 12.9 1.0 C2A D:HEM601 4.3 12.9 1.0 C3A D:HEM601 4.3 12.9 1.0 HHC D:HEM601 4.4 15.7 1.0 C3B D:HEM601 4.4 13.1 1.0 C2B D:HEM601 4.4 12.9 1.0 HHD D:HEM601 4.4 15.7 1.0 NH2 D:ARG353 4.4 1.1 1.0 NE2 D:HIS74 4.4 52.5 1.0 HHA D:HEM601 4.4 15.6 1.0 CE1 D:TYR357 4.4 1.1 1.0 HHB D:HEM601 4.5 15.6 1.0 HE1 D:TYR357 4.5 0.3 1.0 NE D:ARG353 4.5 1.1 1.0 CD2 D:HIS74 4.5 52.5 1.0 HE1 D:PHE160 4.6 23.7 1.0 HG22 D:VAL73 4.7 37.9 1.0 CE1 D:PHE160 4.8 19.6 1.0 CZ D:ARG353 4.8 1.1 1.0 HH22 D:ARG353 4.9 0.3 1.0

K.Takaba, S.Maki-Yonekura, K.Yonekura. Protein and Organic-Molecular Crystallography with 300KV Electrons on A Direct Electron Detector To Be Published.