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Iron in PDB 7dlb: Crassostrea Gigas Ferritin Mutant-D119K

Enzymatic activity of Crassostrea Gigas Ferritin Mutant-D119K

All present enzymatic activity of Crassostrea Gigas Ferritin Mutant-D119K:
1.16.3.1;

Protein crystallography data

The structure of Crassostrea Gigas Ferritin Mutant-D119K, PDB code: 7dlb was solved by H.Li, J.Zang, Z.Wang, M.Du, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.56 / 2.50
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 150.702, 150.702, 150.702, 90, 90, 90
R / Rfree (%) 19.5 / 24.1

Iron Binding Sites:

The binding sites of Iron atom in the Crassostrea Gigas Ferritin Mutant-D119K (pdb code 7dlb). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crassostrea Gigas Ferritin Mutant-D119K, PDB code: 7dlb:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 7dlb

Go back to Iron Binding Sites List in 7dlb
Iron binding site 1 out of 2 in the Crassostrea Gigas Ferritin Mutant-D119K


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crassostrea Gigas Ferritin Mutant-D119K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:51.4
occ:1.00
O A:HOH332 1.8 45.1 1.0
O A:HOH303 2.1 43.4 1.0
OE1 A:GLU59 2.1 42.9 1.0
OE1 A:GLU24 2.2 42.5 1.0
ND1 A:HIS62 2.3 46.7 1.0
CD A:GLU59 2.9 42.9 1.0
CE1 A:HIS62 3.2 48.1 1.0
CD A:GLU24 3.2 38.6 1.0
OE2 A:GLU59 3.2 43.8 1.0
CG A:HIS62 3.4 44.8 1.0
OE2 A:GLU24 3.5 41.8 1.0
CB A:HIS62 3.7 37.8 1.0
OE1 A:GLN138 3.8 41.6 1.0
CG1 A:VAL107 4.0 40.4 1.0
O A:HOH335 4.0 40.4 1.0
O A:HOH343 4.2 48.7 1.0
CG A:GLU59 4.3 36.6 1.0
NE2 A:HIS62 4.3 53.7 1.0
CA A:GLU59 4.3 42.4 1.0
CD2 A:HIS62 4.4 46.0 1.0
CB A:GLU59 4.5 34.9 1.0
CG A:GLU24 4.5 37.8 1.0
CD A:GLN138 4.7 37.0 1.0
CB A:GLU24 4.9 37.3 1.0
O A:GLU59 5.0 38.9 1.0

Iron binding site 2 out of 2 in 7dlb

Go back to Iron Binding Sites List in 7dlb
Iron binding site 2 out of 2 in the Crassostrea Gigas Ferritin Mutant-D119K


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crassostrea Gigas Ferritin Mutant-D119K within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:57.0
occ:1.00
O B:HOH314 1.8 39.1 1.0
OE1 B:GLU59 1.8 43.0 1.0
OE1 B:GLU24 2.3 40.8 1.0
ND1 B:HIS62 2.4 47.6 1.0
CD B:GLU59 2.7 42.7 1.0
OE2 B:GLU59 2.9 46.0 1.0
CE1 B:HIS62 3.2 50.3 1.0
CD B:GLU24 3.4 38.8 1.0
CG B:HIS62 3.5 44.1 1.0
OE1 B:GLN138 3.6 43.4 1.0
O B:HOH329 3.6 41.1 1.0
OE2 B:GLU24 3.8 43.0 1.0
CB B:HIS62 3.9 41.9 1.0
CG1 B:VAL107 3.9 38.7 1.0
CG B:GLU59 4.1 35.5 1.0
NE2 B:HIS62 4.4 54.4 1.0
CA B:GLU59 4.4 41.4 1.0
CD B:GLN138 4.5 39.2 1.0
CD2 B:HIS62 4.5 45.5 1.0
CB B:GLU59 4.5 34.6 1.0
CG B:GLU24 4.7 36.6 1.0
NE2 B:GLN138 5.0 40.1 1.0
CB B:GLU24 5.0 37.0 1.0
CB B:VAL107 5.0 40.3 1.0

Reference:

H.Li, J.Zang, Z.Wang, M.Du. Crassostrea Gigas Ferritin Mutant-D119K To Be Published.
Page generated: Wed Aug 6 21:47:24 2025

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