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Iron in PDB 7zcl: Unspecific Peroxygenase From Collariella Virescens

Enzymatic activity of Unspecific Peroxygenase From Collariella Virescens

All present enzymatic activity of Unspecific Peroxygenase From Collariella Virescens:
1.11.2.1;

Protein crystallography data

The structure of Unspecific Peroxygenase From Collariella Virescens, PDB code: 7zcl was solved by E.Santillana, A.Romero, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 68.47 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.476, 140.131, 42.227, 90, 90, 90
R / Rfree (%) 18.8 / 24.2

Other elements in 7zcl:

The structure of Unspecific Peroxygenase From Collariella Virescens also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Unspecific Peroxygenase From Collariella Virescens (pdb code 7zcl). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Unspecific Peroxygenase From Collariella Virescens, PDB code: 7zcl:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 7zcl

Go back to Iron Binding Sites List in 7zcl
Iron binding site 1 out of 2 in the Unspecific Peroxygenase From Collariella Virescens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Unspecific Peroxygenase From Collariella Virescens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:13.8
occ:1.00
FE A:HEC301 0.0 13.8 1.0
ND A:HEC301 2.0 15.2 1.0
NA A:HEC301 2.0 18.2 1.0
NC A:HEC301 2.0 18.4 1.0
NB A:HEC301 2.1 15.9 1.0
O A:HOH460 2.1 19.9 1.0
SG A:CYS19 2.4 12.0 1.0
C4D A:HEC301 3.0 14.8 1.0
C1A A:HEC301 3.0 15.8 1.0
C1D A:HEC301 3.1 15.8 1.0
C1C A:HEC301 3.1 22.6 1.0
C4C A:HEC301 3.1 18.0 1.0
C4B A:HEC301 3.1 20.3 1.0
C4A A:HEC301 3.1 16.9 1.0
C1B A:HEC301 3.1 15.7 1.0
CHA A:HEC301 3.4 12.1 1.0
CHC A:HEC301 3.4 22.1 1.0
CHD A:HEC301 3.5 15.7 1.0
CB A:CYS19 3.5 16.8 1.0
CHB A:HEC301 3.5 11.9 1.0
C3D A:HEC301 4.2 16.5 1.0
C2D A:HEC301 4.3 17.0 1.0
C2A A:HEC301 4.3 15.1 1.0
C2C A:HEC301 4.3 21.1 1.0
C3C A:HEC301 4.3 19.2 1.0
C3A A:HEC301 4.3 14.7 1.0
C3B A:HEC301 4.3 15.5 1.0
CA A:CYS19 4.3 14.6 1.0
C2B A:HEC301 4.3 14.3 1.0
CB A:ALA21 4.8 18.1 1.0
CG A:GLU162 4.9 17.4 1.0

Iron binding site 2 out of 2 in 7zcl

Go back to Iron Binding Sites List in 7zcl
Iron binding site 2 out of 2 in the Unspecific Peroxygenase From Collariella Virescens


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Unspecific Peroxygenase From Collariella Virescens within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:17.6
occ:1.00
FE B:HEC302 0.0 17.6 1.0
ND B:HEC302 2.0 17.8 1.0
NA B:HEC302 2.0 17.9 1.0
NC B:HEC302 2.1 21.4 1.0
NB B:HEC302 2.1 17.7 1.0
SG B:CYS19 2.3 18.1 1.0
O B:HOH481 2.6 29.2 1.0
C4D B:HEC302 3.0 18.5 1.0
C1A B:HEC302 3.0 18.5 1.0
C1D B:HEC302 3.0 21.6 1.0
C4A B:HEC302 3.0 18.0 1.0
C4C B:HEC302 3.1 19.3 1.0
C1C B:HEC302 3.1 18.5 1.0
C1B B:HEC302 3.1 21.3 1.0
C4B B:HEC302 3.1 20.3 1.0
CB B:CYS19 3.3 18.4 1.0
CHA B:HEC302 3.4 15.4 1.0
CHD B:HEC302 3.4 16.6 1.0
CHB B:HEC302 3.4 17.6 1.0
CHC B:HEC302 3.5 21.1 1.0
C3D B:HEC302 4.2 19.7 1.0
C2D B:HEC302 4.2 19.4 1.0
C2A B:HEC302 4.2 18.6 1.0
C3A B:HEC302 4.2 16.0 1.0
CA B:CYS19 4.3 17.5 1.0
C3C B:HEC302 4.3 22.5 1.0
C2C B:HEC302 4.3 23.8 1.0
C2B B:HEC302 4.3 20.2 1.0
C3B B:HEC302 4.3 23.2 1.0
CG B:GLU162 4.8 16.4 1.0
CB B:ALA21 4.9 12.8 1.0
CG B:MET22 5.0 19.8 1.0
C B:CYS19 5.0 13.0 1.0

Reference:

D.Linde, E.Santillana, E.Fernandez-Fueyo, A.Gonzalez-Benjumea, J.Carro, A.Gutierrez, A.T.Martinez, A.Romero. Structural Characterization of Two Short Unspecific Peroxygenases: Two Different Dimeric Arrangements. Antioxidants V. 11 2022.
ISSN: ESSN 2076-3921
PubMed: 35624755
DOI: 10.3390/ANTIOX11050891
Page generated: Fri Aug 9 14:02:33 2024

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