Iron in PDB 8b4o: Cryo-Em Structure of Cytochrome Bd Oxidase From C. Glutamicum

The binding sites of Iron atom in the Cryo-Em Structure of Cytochrome Bd Oxidase From C. Glutamicum (pdb code 8b4o). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Cryo-Em Structure of Cytochrome Bd Oxidase From C. Glutamicum, PDB code: 8b4o:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in the Cryo-Em Structure of Cytochrome Bd Oxidase From C. Glutamicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Cytochrome Bd Oxidase From C. Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:16.1 occ:1.00 FE A:HDD601 0.0 16.1 1.0 ND A:HDD601 1.8 16.1 1.0 NA A:HDD601 2.1 16.1 1.0 NC A:HDD601 2.1 16.1 1.0 NB A:HDD601 2.1 16.1 1.0 NE2 A:HIS18 2.5 14.6 1.0 C4D A:HDD601 2.8 16.1 1.0 C1D A:HDD601 2.8 16.1 1.0 C4C A:HDD601 3.0 16.1 1.0 C1A A:HDD601 3.0 16.1 1.0 C1B A:HDD601 3.1 16.1 1.0 C4B A:HDD601 3.1 16.1 1.0 C4A A:HDD601 3.1 16.1 1.0 C1C A:HDD601 3.1 16.1 1.0 CHA A:HDD601 3.3 16.1 1.0 CHD A:HDD601 3.3 16.1 1.0 CHC A:HDD601 3.5 16.1 1.0 CHB A:HDD601 3.5 16.1 1.0 CD2 A:HIS18 3.5 14.6 1.0 CE1 A:HIS18 3.5 14.6 1.0 C3D A:HDD601 4.1 16.1 1.0 C2D A:HDD601 4.1 16.1 1.0 C3C A:HDD601 4.3 16.1 1.0 CZ A:PHE103 4.3 16.5 1.0 C2A A:HDD601 4.4 16.1 1.0 C2B A:HDD601 4.4 16.1 1.0 C3B A:HDD601 4.4 16.1 1.0 C3A A:HDD601 4.4 16.1 1.0 C2C A:HDD601 4.4 16.1 1.0 CG2 A:VAL22 4.5 15.1 1.0 ND1 A:HIS18 4.6 14.6 1.0 OE2 A:GLU98 4.6 19.3 1.0 CG A:HIS18 4.6 14.6 1.0 CAD A:HDD601 4.7 16.1 1.0 CE1 A:PHE103 4.7 16.5 1.0 CA A:GLY69 4.8 16.3 1.0 CG1 A:ILE143 4.9 18.2 1.0 OND A:HDD601 4.9 16.1 1.0

Iron binding site 2 out of 3 in the Cryo-Em Structure of Cytochrome Bd Oxidase From C. Glutamicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Cytochrome Bd Oxidase From C. Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe602 b:25.4 occ:1.00 FE A:HEB602 0.0 25.4 1.0 NA A:HEB602 2.1 25.4 1.0 NB A:HEB602 2.2 25.4 1.0 NC A:HEB602 2.2 25.4 1.0 ND A:HEB602 2.4 25.4 1.0 OE1 A:GLU404 2.4 28.3 1.0 C1A A:HEB602 3.2 25.4 1.0 C1C A:HEB602 3.2 25.4 1.0 C1B A:HEB602 3.3 25.4 1.0 C4A A:HEB602 3.3 25.4 1.0 C4B A:HEB602 3.3 25.4 1.0 C4C A:HEB602 3.3 25.4 1.0 C4D A:HEB602 3.4 25.4 1.0 C1D A:HEB602 3.4 25.4 1.0 CD A:GLU404 3.4 28.3 1.0 CE1 A:PHE11 3.6 21.4 1.0 CHC A:HEB602 3.7 25.4 1.0 CHB A:HEB602 3.7 25.4 1.0 CG A:GLU404 3.7 28.3 1.0 CHA A:HEB602 3.7 25.4 1.0 CHD A:HEB602 3.8 25.4 1.0 CD1 A:PHE11 3.9 21.4 1.0 NH2 A:ARG407 4.1 29.9 1.0 C2A A:HEB602 4.2 25.4 1.0 C2C A:HEB602 4.2 25.4 1.0 C2B A:HEB602 4.2 25.4 1.0 CG2 A:THR15 4.3 18.2 1.0 C3A A:HEB602 4.3 25.4 1.0 C3B A:HEB602 4.3 25.4 1.0 C3C A:HEB602 4.4 25.4 1.0 C2D A:HEB602 4.4 25.4 1.0 CB A:GLU404 4.5 28.3 1.0 OE2 A:GLU404 4.5 28.3 1.0 C3D A:HEB602 4.6 25.4 1.0 CZ A:PHE11 4.6 21.4 1.0 ND2 A:ASN147 4.9 23.6 1.0

Iron binding site 3 out of 3 in the Cryo-Em Structure of Cytochrome Bd Oxidase From C. Glutamicum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Cytochrome Bd Oxidase From C. Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe603 b:29.6 occ:1.00 FE A:HEB603 0.0 29.6 1.0 NA A:HEB603 2.1 29.6 1.0 NB A:HEB603 2.2 29.6 1.0 NC A:HEB603 2.2 29.6 1.0 SD A:MET349 2.3 35.4 1.0 ND A:HEB603 2.4 29.6 1.0 NE2 A:HIS185 2.4 25.0 1.0 CD2 A:HIS185 3.1 25.0 1.0 C1A A:HEB603 3.2 29.6 1.0 C1C A:HEB603 3.2 29.6 1.0 C4A A:HEB603 3.3 29.6 1.0 C1B A:HEB603 3.3 29.6 1.0 C4B A:HEB603 3.3 29.6 1.0 C4C A:HEB603 3.3 29.6 1.0 C4D A:HEB603 3.4 29.6 1.0 CG A:MET349 3.4 35.4 1.0 C1D A:HEB603 3.4 29.6 1.0 CE1 A:HIS185 3.5 25.0 1.0 CHB A:HEB603 3.7 29.6 1.0 CHC A:HEB603 3.7 29.6 1.0 CHA A:HEB603 3.7 29.6 1.0 CHD A:HEB603 3.8 29.6 1.0 CE A:MET349 3.8 35.4 1.0 C2A A:HEB603 4.2 29.6 1.0 C2C A:HEB603 4.2 29.6 1.0 C2B A:HEB603 4.2 29.6 1.0 C3A A:HEB603 4.3 29.6 1.0 C3B A:HEB603 4.3 29.6 1.0 CG A:HIS185 4.3 25.0 1.0 C3C A:HEB603 4.4 29.6 1.0 C2D A:HEB603 4.4 29.6 1.0 ND1 A:HIS185 4.5 25.0 1.0 C3D A:HEB603 4.6 29.6 1.0 CB A:MET349 4.8 35.4 1.0

T.N.Grund, H.Michel, S.Safarian. Cryo-Em Structure of Cytochrome Bd Oxidase From C. Glutamicum To Be Published.