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Iron in PDB 8bbv: Coproporphyrin III - Lmcpfc Soaked 2MIN with FE2+

Enzymatic activity of Coproporphyrin III - Lmcpfc Soaked 2MIN with FE2+

All present enzymatic activity of Coproporphyrin III - Lmcpfc Soaked 2MIN with FE2+:
4.99.1.9;

Protein crystallography data

The structure of Coproporphyrin III - Lmcpfc Soaked 2MIN with FE2+, PDB code: 8bbv was solved by T.Gabler, S.Hofbauer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.30 / 2.19
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 36.615, 66.919, 61.802, 90, 103.22, 90
R / Rfree (%) 19.2 / 24.2

Other elements in 8bbv:

The structure of Coproporphyrin III - Lmcpfc Soaked 2MIN with FE2+ also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Coproporphyrin III - Lmcpfc Soaked 2MIN with FE2+ (pdb code 8bbv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Coproporphyrin III - Lmcpfc Soaked 2MIN with FE2+, PDB code: 8bbv:

Iron binding site 1 out of 1 in 8bbv

Go back to Iron Binding Sites List in 8bbv
Iron binding site 1 out of 1 in the Coproporphyrin III - Lmcpfc Soaked 2MIN with FE2+


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Coproporphyrin III - Lmcpfc Soaked 2MIN with FE2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe405

b:44.7
occ:0.24
H33 A:HT9404 1.5 56.2 1.0
H34 A:HT9404 1.6 48.3 1.0
N3 A:HT9404 2.0 43.3 1.0
OH A:TYR12 2.1 44.4 1.0
CZ A:TYR12 2.2 43.8 1.0
N2 A:HT9404 2.2 46.8 1.0
N4 A:HT9404 2.5 40.2 1.0
N1 A:HT9404 2.6 42.9 1.0
CE1 A:TYR12 2.7 44.7 1.0
CE2 A:TYR12 2.8 44.2 1.0
C12 A:HT9404 2.9 45.5 1.0
C13 A:HT9404 2.9 43.9 1.0
HE1 A:TYR12 3.0 53.7 1.0
C8 A:HT9404 3.0 47.1 1.0
HE2 A:TYR12 3.1 53.2 1.0
C14 A:HT9404 3.2 47.9 1.0
C7 A:HT9404 3.3 48.5 1.0
C17 A:HT9404 3.3 40.2 1.0
C20 A:HT9404 3.4 40.1 1.0
C4 A:HT9404 3.5 44.7 1.0
C18 A:HT9404 3.6 41.5 1.0
C3 A:HT9404 3.6 42.7 1.0
CD1 A:TYR12 3.7 39.2 1.0
CD2 A:TYR12 3.7 40.3 1.0
C9 A:HT9404 3.7 45.3 1.0
HE2 A:HIS182 3.7 53.8 1.0
C19 A:HT9404 3.9 38.1 1.0
C11 A:HT9404 4.0 49.0 1.0
C10 A:HT9404 4.1 40.5 1.0
NE2 A:HIS182 4.1 44.8 1.0
CG A:TYR12 4.1 41.3 1.0
H1 A:HT9404 4.2 57.6 1.0
C5 A:HT9404 4.2 47.1 1.0
H3 A:HT9404 4.3 48.2 1.0
HD1 A:TYR12 4.3 47.2 1.0
C6 A:HT9404 4.4 46.1 1.0
HD2 A:TYR12 4.4 48.4 1.0
HG21 A:ILE28 4.4 53.5 1.0
HG12 A:ILE28 4.5 54.2 1.0
C16 A:HT9404 4.6 39.5 1.0
CD2 A:HIS182 4.6 40.8 1.0
CL A:CL406 4.6 62.5 1.0
CE1 A:HIS182 4.6 43.5 1.0
H32 A:HT9404 4.6 54.5 1.0
HG23 A:ILE28 4.7 53.5 1.0
OE2 A:GLU263 4.7 51.9 1.0
C15 A:HT9404 4.7 42.3 1.0
C1 A:HT9404 4.7 45.5 1.0
HD2 A:HIS182 4.7 49.0 1.0
HE1 A:HIS182 4.8 52.3 1.0
HD2 A:HIS87 4.8 52.6 1.0
C2 A:HT9404 4.8 41.7 1.0
H2 A:HT9404 4.9 45.9 1.0
O A:HOH503 4.9 52.3 1.0
HE2 A:HIS87 4.9 53.8 1.0
HD11 A:ILE28 4.9 56.0 1.0

Reference:

T.Gabler, S.Hofbauer. Coproporphyrin III - Lmcpfc Soaked 2MIN with FE2+ To Be Published.
Page generated: Thu Aug 7 13:37:24 2025

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