Iron in PDB 8bcv: Photosystem I Assembly Intermediate of Avena Sativa

All present enzymatic activity of Photosystem I Assembly Intermediate of Avena Sativa:
1.97.1.12;

The structure of Photosystem I Assembly Intermediate of Avena Sativa also contains other interesting chemical elements:

Magnesium

(Mg)

154 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Photosystem I Assembly Intermediate of Avena Sativa (pdb code 8bcv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Photosystem I Assembly Intermediate of Avena Sativa, PDB code: 8bcv:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe853 b:16.9 occ:1.00 FE1 A:SF4853 0.0 16.9 1.0 SG A:CYS573 2.2 12.0 1.0 S2 A:SF4853 2.3 16.9 1.0 S4 A:SF4853 2.3 16.9 1.0 S3 A:SF4853 2.3 16.9 1.0 FE4 A:SF4853 2.7 16.9 1.0 FE3 A:SF4853 2.7 16.9 1.0 FE2 A:SF4853 2.7 16.9 1.0 CB A:CYS573 3.0 12.0 1.0 S1 A:SF4853 3.9 16.9 1.0 CA A:CYS573 4.4 12.0 1.0 SG A:CYS582 4.6 12.1 1.0 SG B:CYS568 4.7 11.6 1.0 N A:GLY575 4.7 12.6 1.0 SG B:CYS559 4.8 13.8 1.0 N A:CYS573 4.9 12.0 1.0 CA A:GLY575 4.9 12.6 1.0 N B:PRO562 4.9 13.0 1.0 CD B:PRO562 4.9 13.0 1.0 CB B:PRO562 4.9 13.0 1.0

Iron binding site 2 out of 12 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe853 b:16.9 occ:1.00 FE2 A:SF4853 0.0 16.9 1.0 SG B:CYS559 2.2 13.8 1.0 S1 A:SF4853 2.3 16.9 1.0 S3 A:SF4853 2.3 16.9 1.0 S4 A:SF4853 2.3 16.9 1.0 FE4 A:SF4853 2.7 16.9 1.0 FE3 A:SF4853 2.7 16.9 1.0 FE1 A:SF4853 2.7 16.9 1.0 CB B:CYS559 3.3 13.8 1.0 S2 A:SF4853 3.9 16.9 1.0 N B:GLY561 4.6 12.8 1.0 CA B:GLY561 4.6 12.8 1.0 SG B:CYS568 4.6 11.6 1.0 CD A:PRO576 4.7 13.5 1.0 SG A:CYS573 4.7 12.0 1.0 CA B:CYS559 4.7 13.8 1.0 SG A:CYS582 4.7 12.1 1.0 N A:PRO576 4.7 13.5 1.0 CB A:PRO576 4.8 13.5 1.0 C B:GLY561 4.9 12.8 1.0

Iron binding site 3 out of 12 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe853 b:16.9 occ:1.00 FE3 A:SF4853 0.0 16.9 1.0 SG B:CYS568 2.2 11.6 1.0 S1 A:SF4853 2.3 16.9 1.0 S4 A:SF4853 2.3 16.9 1.0 S2 A:SF4853 2.3 16.9 1.0 FE2 A:SF4853 2.7 16.9 1.0 FE1 A:SF4853 2.7 16.9 1.0 FE4 A:SF4853 2.7 16.9 1.0 CB B:CYS568 3.5 11.6 1.0 S3 A:SF4853 3.9 16.9 1.0 CA B:CYS568 4.1 11.6 1.0 CZ3 B:TRP667 4.4 10.9 1.0 N B:CYS568 4.4 11.6 1.0 CD1 A:ILE719 4.6 11.4 1.0 SG B:CYS559 4.6 13.8 1.0 SG A:CYS582 4.7 12.1 1.0 SG A:CYS573 4.8 12.0 1.0 CB B:CYS559 4.8 13.8 1.0 CE3 B:TRP667 5.0 10.9 1.0

Iron binding site 4 out of 12 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe853 b:16.9 occ:1.00 FE4 A:SF4853 0.0 16.9 1.0 SG A:CYS582 2.2 12.1 1.0 S2 A:SF4853 2.3 16.9 1.0 S3 A:SF4853 2.3 16.9 1.0 S1 A:SF4853 2.3 16.9 1.0 FE2 A:SF4853 2.7 16.9 1.0 FE1 A:SF4853 2.7 16.9 1.0 FE3 A:SF4853 2.7 16.9 1.0 CB A:CYS582 3.3 12.1 1.0 S4 A:SF4853 3.9 16.9 1.0 CA A:CYS582 4.0 12.1 1.0 N A:CYS582 4.2 12.1 1.0 CD1 B:ILE702 4.4 13.0 1.0 CE3 B:TRP667 4.5 10.9 1.0 CB A:CYS573 4.5 12.0 1.0 SG A:CYS573 4.6 12.0 1.0 CZ3 B:TRP667 4.7 10.9 1.0 SG B:CYS559 4.7 13.8 1.0 SG B:CYS568 4.9 11.6 1.0 O B:HOH985 5.0 13.4 1.0

Iron binding site 5 out of 12 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:20.6 occ:1.00 FE1 C:SF4101 0.0 20.6 1.0 SG C:CYS21 2.2 21.1 1.0 S2 C:SF4101 2.3 20.6 1.0 S3 C:SF4101 2.3 20.6 1.0 S4 C:SF4101 2.3 20.6 1.0 FE2 C:SF4101 2.7 20.6 1.0 FE3 C:SF4101 2.7 20.6 1.0 FE4 C:SF4101 2.7 20.6 1.0 CB C:CYS21 3.3 21.1 1.0 CA C:CYS21 3.9 21.1 1.0 S1 C:SF4101 3.9 20.6 1.0 CD C:PRO22 3.9 20.9 1.0 CG2 C:VAL25 4.2 23.3 1.0 CB C:VAL25 4.2 23.3 1.0 N C:PRO22 4.5 20.9 1.0 C C:CYS21 4.6 21.1 1.0 SG C:CYS51 4.6 15.5 1.0 SG C:CYS54 4.6 16.6 1.0 OG1 C:THR23 4.7 23.3 1.0 SG C:CYS48 4.8 19.9 1.0 CG C:PRO22 5.0 20.9 1.0

Iron binding site 6 out of 12 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:20.6 occ:1.00 FE2 C:SF4101 0.0 20.6 1.0 SG C:CYS54 2.2 16.6 1.0 S4 C:SF4101 2.3 20.6 1.0 S3 C:SF4101 2.3 20.6 1.0 S1 C:SF4101 2.3 20.6 1.0 FE3 C:SF4101 2.7 20.6 1.0 FE1 C:SF4101 2.7 20.6 1.0 FE4 C:SF4101 2.7 20.6 1.0 CB C:CYS54 3.5 16.6 1.0 S2 C:SF4101 3.9 20.6 1.0 CG2 C:VAL67 4.1 18.5 1.0 N C:CYS54 4.1 16.6 1.0 N C:LYS52 4.4 15.7 1.0 CA C:CYS54 4.5 16.6 1.0 CA C:LYS52 4.6 15.7 1.0 SG C:CYS51 4.6 15.5 1.0 N C:ARG53 4.7 17.3 1.0 SG C:CYS48 4.8 19.9 1.0 SG C:CYS21 4.8 21.1 1.0 C C:LYS52 5.0 15.7 1.0

Iron binding site 7 out of 12 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:20.6 occ:1.00 FE3 C:SF4101 0.0 20.6 1.0 SG C:CYS51 2.2 15.5 1.0 S1 C:SF4101 2.3 20.6 1.0 S2 C:SF4101 2.3 20.6 1.0 S4 C:SF4101 2.3 20.6 1.0 FE2 C:SF4101 2.7 20.6 1.0 FE1 C:SF4101 2.7 20.6 1.0 FE4 C:SF4101 2.7 20.6 1.0 N C:CYS51 3.4 15.5 1.0 CB C:CYS51 3.6 15.5 1.0 N C:LYS52 3.6 15.7 1.0 S3 C:SF4101 3.9 20.6 1.0 CA C:CYS51 3.9 15.5 1.0 CD C:PRO22 4.0 20.9 1.0 C C:CYS51 4.2 15.5 1.0 N C:ARG53 4.3 17.3 1.0 C C:GLY50 4.4 16.9 1.0 N C:GLY50 4.4 16.9 1.0 CG C:PRO22 4.5 20.9 1.0 CG2 C:VAL49 4.6 19.0 1.0 CA C:LYS52 4.6 15.7 1.0 SG C:CYS54 4.6 16.6 1.0 SG C:CYS21 4.7 21.1 1.0 SG C:CYS48 4.7 19.9 1.0 CA C:GLY50 4.7 16.9 1.0 C C:LYS52 5.0 15.7 1.0

Iron binding site 8 out of 12 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:20.6 occ:1.00 FE4 C:SF4101 0.0 20.6 1.0 SG C:CYS48 2.2 19.9 1.0 S1 C:SF4101 2.3 20.6 1.0 S3 C:SF4101 2.3 20.6 1.0 S2 C:SF4101 2.3 20.6 1.0 FE1 C:SF4101 2.7 20.6 1.0 FE2 C:SF4101 2.7 20.6 1.0 FE3 C:SF4101 2.7 20.6 1.0 CB C:CYS48 3.6 19.9 1.0 S4 C:SF4101 3.9 20.6 1.0 N C:GLY50 4.0 16.9 1.0 CA C:CYS48 4.1 19.9 1.0 N C:VAL49 4.2 19.0 1.0 CA C:GLY50 4.4 16.9 1.0 CG2 C:VAL25 4.5 23.3 1.0 C C:CYS48 4.6 19.9 1.0 N C:CYS51 4.6 15.5 1.0 CG2 C:VAL5 4.7 22.1 1.0 SG C:CYS21 4.8 21.1 1.0 CB C:VAL25 4.9 23.3 1.0 SG C:CYS51 4.9 15.5 1.0 SG C:CYS54 4.9 16.6 1.0 CG2 C:VAL67 5.0 18.5 1.0 C C:GLY50 5.0 16.9 1.0

Iron binding site 9 out of 12 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:28.1 occ:1.00 FE1 C:SF4102 0.0 28.1 1.0 SG C:CYS14 2.2 24.6 1.0 S4 C:SF4102 2.3 28.1 1.0 S3 C:SF4102 2.3 28.1 1.0 S2 C:SF4102 2.3 28.1 1.0 FE2 C:SF4102 2.7 28.1 1.0 FE3 C:SF4102 2.7 28.1 1.0 FE4 C:SF4102 2.7 28.1 1.0 CB C:CYS14 3.5 24.6 1.0 N C:CYS14 3.5 24.6 1.0 N C:THR15 3.8 25.7 1.0 S1 C:SF4102 3.9 28.1 1.0 CA C:CYS14 3.9 24.6 1.0 CD C:PRO59 4.1 21.8 1.0 C C:CYS14 4.2 24.6 1.0 N C:GLN16 4.3 23.2 1.0 SG C:CYS11 4.5 27.1 1.0 C C:GLY13 4.6 27.7 1.0 N C:GLY13 4.7 27.7 1.0 SG C:CYS58 4.7 19.4 1.0 SG C:CYS17 4.7 20.8 1.0 CA C:THR15 4.7 25.7 1.0 CG C:PRO59 4.8 21.8 1.0 CA C:GLY13 4.9 27.7 1.0 CG1 C:ILE12 4.9 27.3 1.0 N C:CYS17 4.9 20.8 1.0 C C:THR15 4.9 25.7 1.0 CB C:GLN16 5.0 23.2 1.0

Iron binding site 10 out of 12 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:28.1 occ:1.00 FE2 C:SF4102 0.0 28.1 1.0 SG C:CYS11 2.2 27.1 1.0 S4 C:SF4102 2.3 28.1 1.0 S3 C:SF4102 2.3 28.1 1.0 S1 C:SF4102 2.3 28.1 1.0 FE1 C:SF4102 2.7 28.1 1.0 FE4 C:SF4102 2.7 28.1 1.0 FE3 C:SF4102 2.7 28.1 1.0 CB C:CYS11 3.3 27.1 1.0 CA C:CYS11 3.8 27.1 1.0 S2 C:SF4102 3.9 28.1 1.0 N C:GLY13 4.1 27.7 1.0 N C:ILE12 4.1 27.3 1.0 C C:CYS11 4.4 27.1 1.0 CB C:SER64 4.5 21.7 1.0 CA C:GLY13 4.6 27.7 1.0 N C:CYS14 4.7 24.6 1.0 SG C:CYS58 4.8 19.4 1.0 SG C:CYS17 4.8 20.8 1.0 CB C:ALA40 4.8 26.7 1.0 SG C:CYS14 4.9 24.6 1.0

A.Naschberger, A.Amunts, N.Nelson. Photosystem I Assembly Intermediate of Avena Sativa To Be Published.