Iron in PDB 8fhc: Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium

The structure of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium, PDB code: 8fhc was solved by R.Arenas, D.K.Wilson, W.S.Mak, J.B.Siegel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.44 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	48.296, 85.711, 112.558, 90, 90, 90
R / Rfree (%)	19.5 / 23.6

The structure of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium also contains other interesting chemical elements:

Bromine

(Br)

12 atoms

The binding sites of Iron atom in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium (pdb code 8fhc). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium, PDB code: 8fhc:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:34.6 occ:1.00 OE1 A:GLU124 2.0 30.4 1.0 OE1 A:GLU71 2.1 28.9 1.0 ND1 A:HIS161 2.3 26.3 1.0 O A:HOH437 2.5 27.3 1.0 OE1 A:GLU158 2.7 44.9 1.0 CD A:GLU124 2.8 26.3 1.0 CD A:GLU71 3.0 26.8 1.0 OE2 A:GLU124 3.1 33.7 1.0 CE1 A:HIS161 3.1 23.8 1.0 OE2 A:GLU71 3.2 27.8 1.0 CD A:GLU158 3.2 39.4 1.0 OE2 A:GLU158 3.2 50.6 1.0 FE A:FE302 3.3 34.9 1.0 CG A:HIS161 3.4 24.8 1.0 CB A:HIS161 3.8 23.9 1.0 CG A:GLU124 4.2 22.6 1.0 NE2 A:HIS161 4.3 24.5 1.0 CG A:GLU71 4.4 23.9 1.0 CD2 A:HIS161 4.4 26.6 1.0 CG A:GLU158 4.5 36.3 1.0 CA A:GLU158 4.7 29.6 1.0 ND1 A:HIS74 4.8 18.7 1.0 CB A:GLU124 4.9 20.9 1.0 CE1 A:HIS74 5.0 19.2 1.0

Iron binding site 2 out of 4 in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe302 b:34.9 occ:1.00 OE2 A:GLU71 2.1 27.8 1.0 ND1 A:HIS74 2.2 18.7 1.0 OE2 A:GLU40 2.2 28.1 1.0 O A:HOH437 2.6 27.3 1.0 CD A:GLU40 3.0 24.2 1.0 CE1 A:HIS74 3.0 19.2 1.0 CD A:GLU71 3.2 26.8 1.0 CG A:HIS74 3.2 19.4 1.0 OE2 A:GLU158 3.2 50.6 1.0 OE1 A:GLU40 3.2 29.4 1.0 FE A:FE301 3.3 34.6 1.0 CB A:HIS74 3.6 19.6 1.0 OE1 A:GLU71 3.7 28.9 1.0 CD A:GLU158 4.2 39.4 1.0 NE2 A:HIS74 4.2 18.7 1.0 CD2 A:HIS74 4.3 18.7 1.0 CA A:GLU71 4.3 20.0 1.0 CG A:GLU71 4.4 23.9 1.0 CG A:GLU40 4.4 22.0 1.0 CE1 A:HIS161 4.5 23.8 1.0 OE1 A:GLU158 4.6 44.9 1.0 CB A:GLU71 4.6 22.1 1.0 ND1 A:HIS161 4.7 26.3 1.0 CB A:GLU40 4.9 21.4 1.0

Iron binding site 3 out of 4 in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:33.3 occ:1.00 OE1 B:GLU71 2.1 24.4 1.0 OE1 B:GLU40 2.1 26.4 1.0 ND1 B:HIS74 2.3 20.3 1.0 OE2 B:GLU158 2.8 51.6 1.0 O B:HOH492 2.9 32.0 1.0 CD B:GLU40 3.0 24.8 1.0 CE1 B:HIS74 3.2 21.4 1.0 OE2 B:GLU40 3.2 29.2 1.0 CD B:GLU71 3.2 21.8 1.0 FE B:FE302 3.3 28.8 1.0 CG B:HIS74 3.4 20.7 1.0 OE2 B:GLU71 3.7 19.9 1.0 CB B:HIS74 3.7 21.9 1.0 CD B:GLU158 3.9 47.4 1.0 CA B:GLU71 4.3 18.3 1.0 NE2 B:HIS74 4.3 21.8 1.0 CG B:GLU40 4.4 23.3 1.0 OE1 B:GLU158 4.4 47.4 1.0 CD2 B:HIS74 4.4 21.2 1.0 CG B:GLU71 4.5 20.9 1.0 CB B:GLU71 4.6 19.0 1.0 CE1 B:HIS161 4.7 19.9 1.0 ND1 B:HIS161 4.7 19.2 1.0 CB B:GLU40 4.9 21.1 1.0 CG B:GLU158 5.0 39.1 1.0 CD2 B:LEU154 5.0 22.8 1.0 O B:GLU71 5.0 19.0 1.0

Iron binding site 4 out of 4 in the Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe302 b:28.8 occ:1.00 OE1 B:GLU124 1.9 27.1 1.0 OE2 B:GLU71 2.2 19.9 1.0 ND1 B:HIS161 2.3 19.2 1.0 OE1 B:GLU158 2.5 47.4 1.0 OE2 B:GLU158 2.5 51.6 1.0 O B:HOH492 2.7 32.0 1.0 CD B:GLU158 2.8 47.4 1.0 CD B:GLU124 2.9 26.8 1.0 CD B:GLU71 3.0 21.8 1.0 CE1 B:HIS161 3.2 19.9 1.0 OE1 B:GLU71 3.2 24.4 1.0 OE2 B:GLU124 3.3 38.8 1.0 FE B:FE301 3.3 33.3 1.0 CG B:HIS161 3.4 20.4 1.0 CB B:HIS161 3.7 20.0 1.0 CG B:GLU124 4.2 23.5 1.0 CG B:GLU158 4.3 39.1 1.0 NE2 B:HIS161 4.3 19.9 1.0 CG B:GLU71 4.4 20.9 1.0 CD2 B:HIS161 4.4 20.3 1.0 CA B:GLU158 4.6 25.3 1.0 ND1 B:HIS74 4.9 20.3 1.0 CB B:GLU124 4.9 22.0 1.0 OE1 B:GLU40 5.0 26.4 1.0 CB B:GLU158 5.0 29.5 1.0 CB B:ALA43 5.0 21.4 1.0

R.Arenas, D.K.Wilson, W.S.Mak, J.B.Siegel. Protein 41 with Aldehyde Deformylating Oxidase Activity From Gamma Proteobacterium To Be Published.