Iron in PDB 8fvv: Rubrerythrin From B. Pseudomallei: Iron-Bound
Protein crystallography data
The structure of Rubrerythrin From B. Pseudomallei: Iron-Bound, PDB code: 8fvv
was solved by
D.C.F.Monteiro,
M.E.Snell,
G.R.Budziszewski,
S.E.J.Bowman,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.90 /
1.93
|
Space group
|
H 3
|
Cell size a, b, c (Å), α, β, γ (°)
|
202.17,
202.17,
69.825,
90,
90,
120
|
R / Rfree (%)
|
16.1 /
20.9
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the Rubrerythrin From B. Pseudomallei: Iron-Bound
(pdb code 8fvv). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
Rubrerythrin From B. Pseudomallei: Iron-Bound, PDB code: 8fvv:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 8fvv
Go back to
Iron Binding Sites List in 8fvv
Iron binding site 1 out
of 12 in the Rubrerythrin From B. Pseudomallei: Iron-Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Rubrerythrin From B. Pseudomallei: Iron-Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:21.2
occ:0.62
|
HD1
|
A:HIS127
|
1.3
|
17.9
|
0.0
|
OE1
|
A:GLU124
|
1.9
|
26.6
|
1.0
|
OE2
|
A:GLU90
|
2.0
|
26.4
|
1.0
|
OE2
|
B:GLU53
|
2.1
|
22.5
|
1.0
|
ND1
|
A:HIS127
|
2.2
|
17.2
|
1.0
|
O
|
A:HOH325
|
2.4
|
21.1
|
0.5
|
CD
|
A:GLU90
|
2.6
|
29.1
|
1.0
|
OE1
|
A:GLU90
|
2.6
|
37.1
|
1.0
|
CD
|
A:GLU124
|
2.8
|
25.1
|
1.0
|
CD
|
B:GLU53
|
3.0
|
19.7
|
1.0
|
CE1
|
A:HIS127
|
3.1
|
17.3
|
1.0
|
OE2
|
A:GLU124
|
3.1
|
35.4
|
1.0
|
OE1
|
B:GLU53
|
3.2
|
21.7
|
1.0
|
HE1
|
A:HIS127
|
3.2
|
17.1
|
1.0
|
CG
|
A:HIS127
|
3.2
|
17.5
|
1.0
|
HB2
|
A:HIS127
|
3.4
|
17.4
|
1.0
|
HB3
|
A:HIS127
|
3.4
|
17.4
|
1.0
|
O
|
A:HOH325
|
3.4
|
14.0
|
0.5
|
HE2
|
B:TYR27
|
3.4
|
17.6
|
1.0
|
CB
|
A:HIS127
|
3.6
|
17.5
|
1.0
|
HA
|
A:GLU124
|
3.6
|
18.1
|
1.0
|
FE
|
B:FE202
|
3.8
|
59.5
|
0.5
|
HG23
|
B:THR49
|
3.9
|
16.7
|
1.0
|
OH
|
B:TYR27
|
4.1
|
18.2
|
1.0
|
CG
|
A:GLU90
|
4.1
|
28.1
|
1.0
|
HG22
|
B:THR49
|
4.2
|
16.7
|
1.0
|
CG
|
A:GLU124
|
4.2
|
22.6
|
1.0
|
NE2
|
A:HIS127
|
4.3
|
16.4
|
1.0
|
HG21
|
B:THR49
|
4.3
|
16.7
|
1.0
|
CE2
|
B:TYR27
|
4.3
|
17.5
|
1.0
|
CG2
|
B:THR49
|
4.3
|
16.4
|
1.0
|
CD2
|
A:HIS127
|
4.3
|
16.4
|
1.0
|
HG3
|
A:GLU90
|
4.3
|
27.3
|
1.0
|
CG
|
B:GLU53
|
4.4
|
18.1
|
1.0
|
CA
|
A:GLU124
|
4.5
|
18.2
|
1.0
|
HB3
|
A:GLU124
|
4.5
|
20.1
|
1.0
|
HG2
|
A:GLU90
|
4.5
|
27.2
|
1.0
|
HG3
|
B:GLU53
|
4.6
|
18.0
|
1.0
|
HG2
|
B:GLU53
|
4.6
|
18.0
|
1.0
|
HD1
|
B:HIS56
|
4.6
|
17.6
|
0.0
|
CB
|
A:GLU124
|
4.6
|
20.1
|
1.0
|
HG3
|
A:GLU124
|
4.6
|
22.6
|
1.0
|
HE1
|
B:HIS56
|
4.7
|
17.0
|
1.0
|
HE2
|
A:TYR131
|
4.7
|
18.8
|
1.0
|
CZ
|
B:TYR27
|
4.7
|
17.8
|
1.0
|
HH
|
B:TYR27
|
4.7
|
18.2
|
0.0
|
OE1
|
A:GLU93
|
4.7
|
33.4
|
1.0
|
HG2
|
A:GLU124
|
4.8
|
22.6
|
1.0
|
HB3
|
A:GLU90
|
4.9
|
24.0
|
1.0
|
OE2
|
A:GLU93
|
5.0
|
39.5
|
1.0
|
HA
|
A:GLU90
|
5.0
|
20.9
|
1.0
|
|
Iron binding site 2 out
of 12 in 8fvv
Go back to
Iron Binding Sites List in 8fvv
Iron binding site 2 out
of 12 in the Rubrerythrin From B. Pseudomallei: Iron-Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Rubrerythrin From B. Pseudomallei: Iron-Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe202
b:30.1
occ:0.22
|
HD1
|
A:HIS56
|
1.5
|
19.6
|
0.0
|
OE2
|
B:GLU124
|
1.9
|
33.1
|
1.0
|
OE1
|
A:GLU53
|
1.9
|
21.4
|
1.0
|
OE2
|
A:GLU20
|
1.9
|
39.7
|
1.0
|
ND1
|
A:HIS56
|
2.4
|
20.0
|
1.0
|
CD
|
A:GLU20
|
2.4
|
32.6
|
1.0
|
OE1
|
A:GLU20
|
2.6
|
44.7
|
1.0
|
CD
|
A:GLU53
|
3.1
|
20.1
|
1.0
|
CD
|
B:GLU124
|
3.1
|
27.3
|
1.0
|
HB2
|
A:HIS56
|
3.1
|
18.5
|
1.0
|
HA
|
A:GLU53
|
3.2
|
16.7
|
1.0
|
CG
|
A:HIS56
|
3.3
|
18.8
|
1.0
|
CE1
|
A:HIS56
|
3.4
|
22.2
|
1.0
|
CB
|
A:HIS56
|
3.5
|
18.7
|
1.0
|
O
|
B:HOH336
|
3.5
|
24.4
|
1.0
|
HB3
|
A:HIS56
|
3.5
|
18.5
|
1.0
|
HE1
|
A:HIS56
|
3.6
|
21.5
|
1.0
|
OE2
|
A:GLU53
|
3.6
|
22.3
|
1.0
|
CG
|
A:GLU20
|
3.7
|
28.1
|
1.0
|
FE
|
B:FE201
|
3.8
|
34.8
|
1.0
|
OE1
|
B:GLU124
|
3.8
|
29.4
|
1.0
|
HG3
|
A:GLU20
|
3.8
|
28.2
|
1.0
|
HE2
|
B:TYR98
|
4.0
|
24.8
|
1.0
|
HE1
|
B:HIS127
|
4.0
|
20.0
|
1.0
|
CA
|
A:GLU53
|
4.1
|
16.3
|
1.0
|
HB3
|
A:GLU20
|
4.1
|
24.2
|
1.0
|
CG
|
B:GLU124
|
4.2
|
24.7
|
1.0
|
HG2
|
B:GLU124
|
4.2
|
24.5
|
1.0
|
HD1
|
B:HIS127
|
4.2
|
20.5
|
0.0
|
HB3
|
A:GLU53
|
4.3
|
17.9
|
1.0
|
CG
|
A:GLU53
|
4.3
|
19.4
|
1.0
|
HG3
|
B:GLU124
|
4.3
|
24.6
|
1.0
|
HD12
|
B:LEU120
|
4.3
|
23.4
|
1.0
|
HG2
|
A:GLU20
|
4.4
|
28.0
|
1.0
|
CB
|
A:GLU53
|
4.4
|
17.9
|
1.0
|
OE1
|
B:GLU93
|
4.4
|
39.0
|
1.0
|
CD2
|
A:HIS56
|
4.4
|
19.4
|
1.0
|
CB
|
A:GLU20
|
4.5
|
24.4
|
1.0
|
NE2
|
A:HIS56
|
4.5
|
21.6
|
1.0
|
OH
|
B:TYR98
|
4.5
|
25.8
|
1.0
|
HA
|
A:GLU20
|
4.5
|
20.8
|
1.0
|
CE1
|
B:HIS127
|
4.7
|
20.6
|
1.0
|
N
|
A:GLU53
|
4.7
|
16.6
|
1.0
|
ND1
|
B:HIS127
|
4.7
|
19.9
|
1.0
|
HB3
|
B:LEU120
|
4.8
|
24.2
|
1.0
|
HG3
|
A:GLU53
|
4.8
|
19.2
|
1.0
|
CE2
|
B:TYR98
|
4.8
|
23.9
|
1.0
|
O
|
A:GLY52
|
4.9
|
19.1
|
1.0
|
HG2
|
A:GLU53
|
4.9
|
19.1
|
1.0
|
|
Iron binding site 3 out
of 12 in 8fvv
Go back to
Iron Binding Sites List in 8fvv
Iron binding site 3 out
of 12 in the Rubrerythrin From B. Pseudomallei: Iron-Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Rubrerythrin From B. Pseudomallei: Iron-Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:34.8
occ:1.00
|
HD1
|
B:HIS127
|
1.4
|
20.5
|
0.0
|
OE1
|
B:GLU124
|
1.9
|
29.4
|
1.0
|
OE2
|
A:GLU53
|
2.0
|
22.3
|
1.0
|
OE2
|
B:GLU90
|
2.2
|
36.4
|
1.0
|
ND1
|
B:HIS127
|
2.3
|
19.9
|
1.0
|
OE1
|
B:GLU90
|
2.5
|
48.3
|
1.0
|
CD
|
B:GLU90
|
2.6
|
38.0
|
1.0
|
CD
|
B:GLU124
|
2.8
|
27.3
|
1.0
|
O
|
B:HOH336
|
2.8
|
24.4
|
1.0
|
OE2
|
B:GLU124
|
2.9
|
33.1
|
1.0
|
CD
|
A:GLU53
|
2.9
|
20.1
|
1.0
|
OE1
|
A:GLU53
|
3.2
|
21.4
|
1.0
|
CE1
|
B:HIS127
|
3.2
|
20.6
|
1.0
|
CG
|
B:HIS127
|
3.3
|
19.1
|
1.0
|
HE1
|
B:HIS127
|
3.4
|
20.0
|
1.0
|
HB2
|
B:HIS127
|
3.4
|
19.2
|
1.0
|
HB3
|
B:HIS127
|
3.4
|
19.2
|
1.0
|
HE2
|
A:TYR27
|
3.5
|
15.4
|
1.0
|
CB
|
B:HIS127
|
3.6
|
19.4
|
1.0
|
HA
|
B:GLU124
|
3.7
|
20.8
|
1.0
|
HG23
|
A:THR49
|
3.8
|
16.6
|
1.0
|
FE
|
A:FE202
|
3.8
|
30.1
|
0.2
|
OH
|
A:TYR27
|
4.1
|
16.5
|
1.0
|
HG22
|
A:THR49
|
4.1
|
16.6
|
1.0
|
CG
|
B:GLU90
|
4.2
|
31.9
|
1.0
|
CG
|
B:GLU124
|
4.2
|
24.7
|
1.0
|
HG21
|
A:THR49
|
4.2
|
16.6
|
1.0
|
CG2
|
A:THR49
|
4.2
|
16.7
|
1.0
|
CG
|
A:GLU53
|
4.3
|
19.4
|
1.0
|
CE2
|
A:TYR27
|
4.4
|
15.3
|
1.0
|
NE2
|
B:HIS127
|
4.4
|
18.8
|
1.0
|
CD2
|
B:HIS127
|
4.4
|
18.8
|
1.0
|
HD1
|
A:HIS56
|
4.5
|
19.6
|
0.0
|
HG3
|
B:GLU90
|
4.5
|
31.7
|
1.0
|
HG2
|
A:GLU53
|
4.5
|
19.1
|
1.0
|
HG3
|
A:GLU53
|
4.5
|
19.2
|
1.0
|
HG2
|
B:GLU90
|
4.6
|
31.4
|
1.0
|
HB3
|
B:GLU124
|
4.6
|
22.1
|
1.0
|
CA
|
B:GLU124
|
4.6
|
20.6
|
1.0
|
HE2
|
B:TYR131
|
4.6
|
20.0
|
1.0
|
HG3
|
B:GLU124
|
4.6
|
24.6
|
1.0
|
OE1
|
B:GLU93
|
4.6
|
39.0
|
1.0
|
HH
|
A:TYR27
|
4.7
|
16.7
|
0.0
|
CB
|
B:GLU124
|
4.7
|
21.7
|
1.0
|
CZ
|
A:TYR27
|
4.7
|
15.3
|
1.0
|
HG2
|
B:GLU124
|
4.8
|
24.5
|
1.0
|
HB3
|
B:GLU90
|
4.8
|
26.6
|
1.0
|
O
|
A:HOH397
|
4.8
|
10.9
|
0.1
|
OE1
|
A:GLU20
|
4.9
|
44.7
|
1.0
|
HE1
|
A:HIS56
|
4.9
|
21.5
|
1.0
|
HB1
|
A:ALA23
|
4.9
|
15.4
|
1.0
|
|
Iron binding site 4 out
of 12 in 8fvv
Go back to
Iron Binding Sites List in 8fvv
Iron binding site 4 out
of 12 in the Rubrerythrin From B. Pseudomallei: Iron-Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Rubrerythrin From B. Pseudomallei: Iron-Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe202
b:59.5
occ:0.45
|
HD1
|
B:HIS56
|
1.6
|
17.6
|
0.0
|
OE2
|
B:GLU20
|
1.9
|
37.7
|
1.0
|
OE2
|
A:GLU124
|
1.9
|
35.4
|
1.0
|
OE1
|
B:GLU53
|
2.1
|
21.7
|
1.0
|
ND1
|
B:HIS56
|
2.4
|
17.0
|
1.0
|
OE1
|
B:GLU20
|
2.5
|
33.9
|
1.0
|
CD
|
B:GLU20
|
2.5
|
33.2
|
1.0
|
O
|
A:HOH325
|
2.6
|
14.0
|
0.5
|
CD
|
A:GLU124
|
3.0
|
25.1
|
1.0
|
CD
|
B:GLU53
|
3.1
|
19.7
|
1.0
|
CE1
|
B:HIS56
|
3.3
|
17.2
|
1.0
|
HB2
|
B:HIS56
|
3.4
|
16.0
|
1.0
|
HE1
|
B:HIS56
|
3.4
|
17.0
|
1.0
|
HA
|
B:GLU53
|
3.4
|
15.8
|
1.0
|
CG
|
B:HIS56
|
3.5
|
17.0
|
1.0
|
OE1
|
A:GLU124
|
3.6
|
26.6
|
1.0
|
OE2
|
B:GLU53
|
3.7
|
22.5
|
1.0
|
FE
|
A:FE201
|
3.8
|
21.2
|
0.6
|
CB
|
B:HIS56
|
3.8
|
15.2
|
1.0
|
O
|
A:HOH325
|
3.8
|
21.1
|
0.5
|
HB3
|
B:HIS56
|
3.8
|
15.9
|
1.0
|
CG
|
B:GLU20
|
3.9
|
25.6
|
1.0
|
HE2
|
A:TYR98
|
4.0
|
22.4
|
1.0
|
OE1
|
A:GLU93
|
4.0
|
33.4
|
1.0
|
HE1
|
A:HIS127
|
4.1
|
17.1
|
1.0
|
CG
|
A:GLU124
|
4.1
|
22.6
|
1.0
|
HG2
|
A:GLU124
|
4.2
|
22.6
|
1.0
|
HG3
|
B:GLU20
|
4.2
|
26.0
|
1.0
|
HG3
|
A:GLU124
|
4.3
|
22.6
|
1.0
|
HB3
|
B:GLU53
|
4.3
|
16.6
|
1.0
|
CG
|
B:GLU53
|
4.3
|
18.1
|
1.0
|
CA
|
B:GLU53
|
4.3
|
15.9
|
1.0
|
HD1
|
A:HIS127
|
4.3
|
17.9
|
0.0
|
HB3
|
B:GLU20
|
4.4
|
21.4
|
1.0
|
HA
|
B:GLU20
|
4.5
|
18.1
|
1.0
|
NE2
|
B:HIS56
|
4.5
|
16.6
|
1.0
|
HG2
|
B:GLU20
|
4.5
|
25.9
|
1.0
|
CB
|
B:GLU53
|
4.5
|
16.2
|
1.0
|
CD2
|
B:HIS56
|
4.6
|
16.8
|
1.0
|
OH
|
A:TYR98
|
4.6
|
21.4
|
1.0
|
CB
|
B:GLU20
|
4.7
|
21.2
|
1.0
|
HD12
|
A:LEU120
|
4.7
|
21.0
|
1.0
|
CE1
|
A:HIS127
|
4.7
|
17.3
|
1.0
|
HB3
|
A:LEU120
|
4.8
|
19.9
|
1.0
|
CE2
|
A:TYR98
|
4.8
|
23.4
|
1.0
|
HG3
|
B:GLU53
|
4.8
|
18.0
|
1.0
|
ND1
|
A:HIS127
|
4.8
|
17.2
|
1.0
|
N
|
B:GLU53
|
5.0
|
15.4
|
1.0
|
HG2
|
B:GLU53
|
5.0
|
18.0
|
1.0
|
|
Iron binding site 5 out
of 12 in 8fvv
Go back to
Iron Binding Sites List in 8fvv
Iron binding site 5 out
of 12 in the Rubrerythrin From B. Pseudomallei: Iron-Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Rubrerythrin From B. Pseudomallei: Iron-Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:21.6
occ:0.59
|
HD1
|
C:HIS127
|
1.3
|
18.2
|
0.0
|
OE1
|
C:GLU124
|
1.9
|
27.2
|
1.0
|
OE2
|
C:GLU90
|
2.0
|
23.8
|
1.0
|
OE2
|
D:GLU53
|
2.0
|
21.2
|
1.0
|
ND1
|
C:HIS127
|
2.2
|
18.0
|
1.0
|
O
|
D:HOH313
|
2.5
|
6.8
|
0.5
|
OE1
|
C:GLU90
|
2.5
|
34.0
|
1.0
|
CD
|
C:GLU90
|
2.5
|
27.3
|
1.0
|
CD
|
D:GLU53
|
2.9
|
18.0
|
1.0
|
CD
|
C:GLU124
|
2.9
|
24.4
|
1.0
|
OE1
|
D:GLU53
|
3.1
|
20.1
|
1.0
|
CE1
|
C:HIS127
|
3.2
|
18.5
|
1.0
|
CG
|
C:HIS127
|
3.3
|
17.9
|
1.0
|
HE1
|
C:HIS127
|
3.3
|
18.3
|
1.0
|
HE2
|
D:TYR27
|
3.3
|
19.2
|
1.0
|
HB2
|
C:HIS127
|
3.3
|
17.7
|
1.0
|
OE2
|
C:GLU124
|
3.4
|
30.8
|
1.0
|
HB3
|
C:HIS127
|
3.5
|
17.8
|
1.0
|
CB
|
C:HIS127
|
3.6
|
17.7
|
1.0
|
HA
|
C:GLU124
|
3.6
|
16.4
|
1.0
|
HG23
|
D:THR49
|
3.9
|
17.1
|
1.0
|
CG
|
C:GLU90
|
4.0
|
25.0
|
1.0
|
O
|
D:HOH313
|
4.1
|
22.0
|
0.5
|
HG22
|
D:THR49
|
4.2
|
17.1
|
1.0
|
CE2
|
D:TYR27
|
4.2
|
19.4
|
1.0
|
OH
|
D:TYR27
|
4.2
|
20.1
|
1.0
|
HG21
|
D:THR49
|
4.2
|
17.1
|
1.0
|
FE
|
D:FE202
|
4.2
|
58.0
|
0.5
|
CG
|
C:GLU124
|
4.3
|
21.1
|
1.0
|
HG3
|
C:GLU90
|
4.3
|
24.7
|
1.0
|
CG
|
D:GLU53
|
4.3
|
17.2
|
1.0
|
CG2
|
D:THR49
|
4.3
|
16.8
|
1.0
|
NE2
|
C:HIS127
|
4.3
|
18.2
|
1.0
|
CD2
|
C:HIS127
|
4.4
|
17.5
|
1.0
|
HG2
|
C:GLU90
|
4.4
|
24.6
|
1.0
|
HG3
|
D:GLU53
|
4.5
|
17.1
|
1.0
|
HD2
|
D:HIS56
|
4.5
|
18.8
|
1.0
|
CA
|
C:GLU124
|
4.5
|
16.6
|
1.0
|
HG2
|
D:GLU53
|
4.6
|
17.0
|
1.0
|
HB3
|
C:GLU124
|
4.6
|
18.3
|
1.0
|
HE2
|
C:TYR131
|
4.6
|
19.0
|
1.0
|
HG3
|
C:GLU124
|
4.6
|
21.1
|
1.0
|
CB
|
C:GLU124
|
4.7
|
17.9
|
1.0
|
CZ
|
D:TYR27
|
4.7
|
19.4
|
1.0
|
OE1
|
C:GLU93
|
4.8
|
37.9
|
1.0
|
HB3
|
C:GLU90
|
4.8
|
21.8
|
1.0
|
HH
|
D:TYR27
|
4.9
|
20.1
|
0.0
|
HG2
|
C:GLU124
|
4.9
|
21.0
|
1.0
|
HE2
|
D:HIS56
|
4.9
|
20.9
|
0.0
|
HB1
|
D:ALA23
|
4.9
|
16.9
|
1.0
|
HA
|
C:GLU90
|
5.0
|
18.9
|
1.0
|
CB
|
C:GLU90
|
5.0
|
21.8
|
1.0
|
OE2
|
C:GLU93
|
5.0
|
39.5
|
1.0
|
|
Iron binding site 6 out
of 12 in 8fvv
Go back to
Iron Binding Sites List in 8fvv
Iron binding site 6 out
of 12 in the Rubrerythrin From B. Pseudomallei: Iron-Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Rubrerythrin From B. Pseudomallei: Iron-Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe202
b:36.2
occ:0.22
|
HD1
|
C:HIS56
|
1.1
|
20.9
|
0.0
|
OE1
|
C:GLU53
|
1.9
|
28.2
|
1.0
|
OE2
|
D:GLU124
|
1.9
|
34.0
|
1.0
|
ND1
|
C:HIS56
|
2.0
|
20.4
|
1.0
|
OE2
|
C:GLU20
|
2.2
|
39.5
|
1.0
|
CE1
|
C:HIS56
|
2.9
|
20.1
|
1.0
|
CD
|
C:GLU20
|
2.9
|
39.5
|
1.0
|
CD
|
D:GLU124
|
3.0
|
27.8
|
1.0
|
CG
|
C:HIS56
|
3.0
|
19.6
|
1.0
|
CD
|
C:GLU53
|
3.1
|
23.4
|
1.0
|
HE1
|
C:HIS56
|
3.1
|
20.4
|
1.0
|
HA
|
C:GLU53
|
3.1
|
17.8
|
1.0
|
HB2
|
C:HIS56
|
3.1
|
19.4
|
1.0
|
OE1
|
D:GLU124
|
3.4
|
30.3
|
1.0
|
OE1
|
C:GLU20
|
3.4
|
52.0
|
1.0
|
CB
|
C:HIS56
|
3.4
|
19.4
|
1.0
|
HB3
|
C:HIS56
|
3.5
|
19.4
|
1.0
|
OE2
|
C:GLU53
|
3.6
|
27.3
|
1.0
|
FE
|
D:FE201
|
3.8
|
27.5
|
0.8
|
O
|
C:HOH345
|
3.8
|
27.6
|
1.0
|
HE1
|
D:HIS127
|
3.9
|
22.3
|
1.0
|
HG3
|
C:GLU20
|
4.0
|
30.9
|
1.0
|
CA
|
C:GLU53
|
4.0
|
17.7
|
1.0
|
NE2
|
C:HIS56
|
4.0
|
21.1
|
1.0
|
CG
|
C:GLU20
|
4.0
|
30.9
|
1.0
|
CD2
|
C:HIS56
|
4.1
|
19.6
|
1.0
|
HD1
|
D:HIS127
|
4.2
|
18.2
|
0.0
|
HD12
|
D:LEU120
|
4.2
|
25.9
|
1.0
|
CG
|
C:GLU53
|
4.2
|
20.4
|
1.0
|
CG
|
D:GLU124
|
4.3
|
24.9
|
1.0
|
HG2
|
D:GLU124
|
4.3
|
25.0
|
1.0
|
HB3
|
C:GLU53
|
4.3
|
18.9
|
1.0
|
HE2
|
D:TYR98
|
4.4
|
30.4
|
1.0
|
CB
|
C:GLU53
|
4.4
|
18.8
|
1.0
|
HB3
|
C:GLU20
|
4.4
|
25.6
|
1.0
|
CE1
|
D:HIS127
|
4.5
|
23.4
|
1.0
|
HG3
|
D:GLU124
|
4.5
|
25.1
|
1.0
|
N
|
C:GLU53
|
4.5
|
17.1
|
1.0
|
OE1
|
D:GLU93
|
4.6
|
37.4
|
1.0
|
ND1
|
D:HIS127
|
4.6
|
20.0
|
1.0
|
O
|
C:GLY52
|
4.7
|
17.8
|
1.0
|
OH
|
D:TYR98
|
4.7
|
29.9
|
1.0
|
HA
|
C:GLU20
|
4.8
|
22.6
|
1.0
|
CB
|
C:GLU20
|
4.8
|
24.6
|
1.0
|
HG2
|
C:GLU20
|
4.8
|
30.9
|
1.0
|
C
|
C:GLY52
|
4.8
|
18.3
|
1.0
|
HE2
|
C:HIS56
|
4.8
|
21.5
|
0.0
|
HG2
|
C:GLU53
|
4.8
|
20.7
|
1.0
|
HG3
|
C:GLU53
|
4.8
|
20.7
|
1.0
|
H
|
C:HIS56
|
4.9
|
19.2
|
1.0
|
HB3
|
D:LEU120
|
4.9
|
23.8
|
1.0
|
CA
|
C:HIS56
|
4.9
|
19.1
|
1.0
|
HD2
|
C:HIS56
|
5.0
|
19.9
|
1.0
|
|
Iron binding site 7 out
of 12 in 8fvv
Go back to
Iron Binding Sites List in 8fvv
Iron binding site 7 out
of 12 in the Rubrerythrin From B. Pseudomallei: Iron-Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Rubrerythrin From B. Pseudomallei: Iron-Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe201
b:27.5
occ:0.82
|
HD1
|
D:HIS127
|
1.4
|
18.2
|
0.0
|
OE1
|
D:GLU124
|
1.8
|
30.3
|
1.0
|
OE2
|
C:GLU53
|
2.1
|
27.3
|
1.0
|
OE2
|
D:GLU90
|
2.1
|
30.2
|
1.0
|
ND1
|
D:HIS127
|
2.3
|
20.0
|
1.0
|
OE1
|
D:GLU90
|
2.5
|
49.9
|
1.0
|
CD
|
D:GLU90
|
2.6
|
36.2
|
1.0
|
O
|
C:HOH345
|
2.7
|
27.6
|
1.0
|
CD
|
D:GLU124
|
2.9
|
27.8
|
1.0
|
CD
|
C:GLU53
|
3.0
|
23.4
|
1.0
|
OE1
|
C:GLU53
|
3.2
|
28.2
|
1.0
|
CE1
|
D:HIS127
|
3.3
|
23.4
|
1.0
|
CG
|
D:HIS127
|
3.3
|
21.9
|
1.0
|
HB2
|
D:HIS127
|
3.3
|
22.5
|
1.0
|
OE2
|
D:GLU124
|
3.3
|
34.0
|
1.0
|
HE1
|
D:HIS127
|
3.4
|
22.3
|
1.0
|
HB3
|
D:HIS127
|
3.4
|
22.5
|
1.0
|
HE2
|
C:TYR27
|
3.5
|
20.4
|
1.0
|
CB
|
D:HIS127
|
3.6
|
22.4
|
1.0
|
HA
|
D:GLU124
|
3.7
|
22.9
|
1.0
|
FE
|
C:FE202
|
3.8
|
36.2
|
0.2
|
HG23
|
C:THR49
|
3.9
|
19.7
|
1.0
|
HG22
|
C:THR49
|
4.0
|
19.7
|
1.0
|
OH
|
C:TYR27
|
4.1
|
23.8
|
1.0
|
CG
|
D:GLU90
|
4.1
|
32.0
|
1.0
|
CG
|
D:GLU124
|
4.2
|
24.9
|
1.0
|
CG2
|
C:THR49
|
4.3
|
19.3
|
1.0
|
HG21
|
C:THR49
|
4.3
|
19.7
|
1.0
|
CE2
|
C:TYR27
|
4.3
|
20.4
|
1.0
|
CG
|
C:GLU53
|
4.4
|
20.4
|
1.0
|
NE2
|
D:HIS127
|
4.4
|
22.3
|
1.0
|
CD2
|
D:HIS127
|
4.4
|
21.3
|
1.0
|
HB3
|
D:GLU124
|
4.4
|
23.3
|
1.0
|
HG3
|
D:GLU90
|
4.5
|
32.1
|
1.0
|
OE1
|
D:GLU93
|
4.5
|
37.4
|
1.0
|
CA
|
D:GLU124
|
4.5
|
23.2
|
1.0
|
HG2
|
C:GLU53
|
4.5
|
20.7
|
1.0
|
HG2
|
D:GLU90
|
4.5
|
32.0
|
1.0
|
HD1
|
C:HIS56
|
4.6
|
20.9
|
0.0
|
HG3
|
D:GLU124
|
4.6
|
25.1
|
1.0
|
HG3
|
C:GLU53
|
4.6
|
20.7
|
1.0
|
CB
|
D:GLU124
|
4.6
|
22.6
|
1.0
|
HE1
|
C:HIS56
|
4.7
|
20.4
|
1.0
|
HE2
|
D:TYR131
|
4.7
|
21.8
|
1.0
|
HH
|
C:TYR27
|
4.7
|
24.6
|
0.0
|
CZ
|
C:TYR27
|
4.7
|
21.4
|
1.0
|
HB3
|
D:GLU90
|
4.8
|
29.2
|
1.0
|
HG2
|
D:GLU124
|
4.8
|
25.0
|
1.0
|
O
|
C:HOH342
|
4.8
|
43.6
|
1.0
|
HA
|
D:GLU90
|
4.9
|
27.0
|
1.0
|
HB1
|
C:ALA23
|
5.0
|
17.7
|
1.0
|
|
Iron binding site 8 out
of 12 in 8fvv
Go back to
Iron Binding Sites List in 8fvv
Iron binding site 8 out
of 12 in the Rubrerythrin From B. Pseudomallei: Iron-Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Rubrerythrin From B. Pseudomallei: Iron-Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe202
b:58.0
occ:0.46
|
OE1
|
D:GLU20
|
1.8
|
35.8
|
1.0
|
HD2
|
D:HIS56
|
1.8
|
18.8
|
1.0
|
OE2
|
C:GLU124
|
1.9
|
30.8
|
1.0
|
OE2
|
D:GLU20
|
2.1
|
34.1
|
1.0
|
CD
|
D:GLU20
|
2.2
|
32.3
|
1.0
|
OE1
|
D:GLU53
|
2.6
|
20.1
|
1.0
|
CD2
|
D:HIS56
|
2.6
|
18.3
|
1.0
|
O
|
D:HOH313
|
2.8
|
22.0
|
0.5
|
CD
|
C:GLU124
|
3.1
|
24.4
|
1.0
|
HB2
|
D:HIS56
|
3.2
|
17.4
|
1.0
|
CG
|
D:HIS56
|
3.3
|
17.2
|
1.0
|
HB3
|
D:HIS56
|
3.4
|
17.3
|
1.0
|
HA
|
D:GLU53
|
3.5
|
14.9
|
1.0
|
CB
|
D:HIS56
|
3.5
|
17.6
|
1.0
|
CD
|
D:GLU53
|
3.6
|
18.0
|
1.0
|
HE2
|
C:TYR98
|
3.6
|
20.8
|
1.0
|
CG
|
D:GLU20
|
3.6
|
26.2
|
1.0
|
NE2
|
D:HIS56
|
3.7
|
20.1
|
1.0
|
OE1
|
C:GLU124
|
3.7
|
27.2
|
1.0
|
O
|
D:HOH313
|
3.7
|
6.8
|
0.5
|
HD12
|
C:LEU120
|
3.8
|
20.7
|
1.0
|
OE1
|
C:GLU93
|
3.9
|
37.9
|
1.0
|
HG3
|
D:GLU20
|
3.9
|
26.8
|
1.0
|
HE2
|
D:HIS56
|
3.9
|
20.9
|
0.0
|
OE2
|
D:GLU53
|
4.1
|
21.2
|
1.0
|
HG2
|
D:GLU20
|
4.2
|
26.6
|
1.0
|
CG
|
C:GLU124
|
4.2
|
21.1
|
1.0
|
HG2
|
C:GLU124
|
4.2
|
21.0
|
1.0
|
OH
|
C:TYR98
|
4.2
|
19.2
|
1.0
|
HA
|
D:GLU20
|
4.2
|
21.0
|
1.0
|
FE
|
C:FE201
|
4.2
|
21.6
|
0.6
|
HG3
|
C:GLU124
|
4.2
|
21.1
|
1.0
|
HB3
|
D:GLU53
|
4.3
|
15.9
|
1.0
|
HB3
|
D:GLU20
|
4.3
|
23.5
|
1.0
|
CE2
|
C:TYR98
|
4.4
|
21.5
|
1.0
|
CA
|
D:GLU53
|
4.4
|
14.9
|
1.0
|
CB
|
D:GLU20
|
4.5
|
23.3
|
1.0
|
ND1
|
D:HIS56
|
4.5
|
19.8
|
1.0
|
CG
|
D:GLU53
|
4.6
|
17.2
|
1.0
|
CB
|
D:GLU53
|
4.6
|
15.8
|
1.0
|
HE1
|
C:HIS127
|
4.6
|
18.3
|
1.0
|
CE1
|
D:HIS56
|
4.7
|
18.5
|
1.0
|
HB3
|
C:LEU120
|
4.7
|
19.7
|
1.0
|
CZ
|
C:TYR98
|
4.7
|
21.1
|
1.0
|
CD1
|
C:LEU120
|
4.8
|
20.7
|
1.0
|
HD1
|
C:HIS127
|
4.8
|
18.2
|
0.0
|
HH
|
C:TYR98
|
4.9
|
18.8
|
0.0
|
CA
|
D:GLU20
|
4.9
|
21.3
|
1.0
|
HD13
|
C:LEU120
|
5.0
|
20.8
|
1.0
|
CD
|
C:GLU93
|
5.0
|
30.9
|
1.0
|
|
Iron binding site 9 out
of 12 in 8fvv
Go back to
Iron Binding Sites List in 8fvv
Iron binding site 9 out
of 12 in the Rubrerythrin From B. Pseudomallei: Iron-Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Rubrerythrin From B. Pseudomallei: Iron-Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe201
b:23.7
occ:0.74
|
HD1
|
E:HIS127
|
1.2
|
15.8
|
0.0
|
OE2
|
F:GLU53
|
2.0
|
24.3
|
1.0
|
ND1
|
E:HIS127
|
2.1
|
16.8
|
1.0
|
OE1
|
E:GLU124
|
2.1
|
27.4
|
1.0
|
OE1
|
E:GLU90
|
2.4
|
42.3
|
1.0
|
OE2
|
E:GLU90
|
2.4
|
58.1
|
1.0
|
OE2
|
E:GLU124
|
2.6
|
26.7
|
1.0
|
CD
|
E:GLU124
|
2.7
|
26.5
|
1.0
|
CD
|
E:GLU90
|
2.7
|
40.0
|
1.0
|
O
|
F:HOH338
|
2.7
|
28.6
|
1.0
|
CD
|
F:GLU53
|
2.9
|
24.1
|
1.0
|
CE1
|
E:HIS127
|
3.0
|
18.0
|
1.0
|
HE1
|
E:HIS127
|
3.1
|
17.9
|
1.0
|
CG
|
E:HIS127
|
3.2
|
17.5
|
1.0
|
OE1
|
F:GLU53
|
3.2
|
29.4
|
1.0
|
HB2
|
E:HIS127
|
3.4
|
18.3
|
1.0
|
HE2
|
F:TYR27
|
3.4
|
21.5
|
1.0
|
HB3
|
E:HIS127
|
3.4
|
18.4
|
1.0
|
CB
|
E:HIS127
|
3.6
|
18.3
|
1.0
|
HA
|
E:GLU124
|
3.7
|
20.8
|
1.0
|
HG23
|
F:THR49
|
3.8
|
19.1
|
1.0
|
FE
|
F:FE202
|
3.8
|
88.8
|
0.5
|
OH
|
F:TYR27
|
4.0
|
24.9
|
1.0
|
HG22
|
F:THR49
|
4.1
|
19.1
|
1.0
|
HG21
|
F:THR49
|
4.1
|
19.1
|
1.0
|
CG
|
E:GLU90
|
4.2
|
33.6
|
1.0
|
CG
|
E:GLU124
|
4.2
|
24.4
|
1.0
|
CG2
|
F:THR49
|
4.2
|
18.8
|
1.0
|
NE2
|
E:HIS127
|
4.2
|
18.7
|
1.0
|
CE2
|
F:TYR27
|
4.2
|
21.9
|
1.0
|
CD2
|
E:HIS127
|
4.3
|
18.6
|
1.0
|
CG
|
F:GLU53
|
4.3
|
22.9
|
1.0
|
HG2
|
F:GLU53
|
4.5
|
23.1
|
1.0
|
HG3
|
F:GLU53
|
4.5
|
23.1
|
1.0
|
HG3
|
E:GLU90
|
4.5
|
33.4
|
1.0
|
HB3
|
E:GLU90
|
4.6
|
27.9
|
1.0
|
HH
|
F:TYR27
|
4.6
|
25.4
|
0.0
|
HG3
|
E:GLU124
|
4.6
|
24.1
|
1.0
|
OE2
|
E:GLU93
|
4.6
|
37.8
|
1.0
|
HD1
|
F:HIS56
|
4.6
|
20.1
|
0.0
|
CZ
|
F:TYR27
|
4.6
|
21.9
|
1.0
|
CA
|
E:GLU124
|
4.6
|
20.5
|
1.0
|
O
|
F:HOH326
|
4.7
|
44.4
|
1.0
|
HE2
|
E:TYR131
|
4.7
|
20.3
|
1.0
|
HG2
|
E:GLU124
|
4.7
|
24.0
|
1.0
|
HG2
|
E:GLU90
|
4.7
|
33.1
|
1.0
|
CB
|
E:GLU124
|
4.8
|
21.1
|
1.0
|
HE1
|
F:HIS56
|
4.8
|
19.6
|
1.0
|
HB3
|
E:GLU124
|
4.9
|
21.7
|
1.0
|
CB
|
E:GLU90
|
4.9
|
27.3
|
1.0
|
|
Iron binding site 10 out
of 12 in 8fvv
Go back to
Iron Binding Sites List in 8fvv
Iron binding site 10 out
of 12 in the Rubrerythrin From B. Pseudomallei: Iron-Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Rubrerythrin From B. Pseudomallei: Iron-Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe202
b:66.2
occ:0.43
|
HD1
|
E:HIS56
|
1.7
|
17.8
|
0.0
|
OE1
|
E:GLU53
|
1.8
|
25.5
|
1.0
|
OE2
|
E:GLU20
|
2.0
|
43.5
|
1.0
|
OE2
|
F:GLU124
|
2.2
|
34.0
|
1.0
|
CD
|
E:GLU20
|
2.4
|
33.3
|
1.0
|
OE1
|
E:GLU20
|
2.5
|
44.9
|
1.0
|
ND1
|
E:HIS56
|
2.6
|
18.1
|
1.0
|
CD
|
E:GLU53
|
2.9
|
23.1
|
1.0
|
O
|
F:HOH331
|
3.1
|
32.6
|
1.0
|
HA
|
E:GLU53
|
3.2
|
20.6
|
1.0
|
CD
|
F:GLU124
|
3.3
|
31.0
|
1.0
|
HB2
|
E:HIS56
|
3.3
|
19.0
|
1.0
|
OE2
|
E:GLU53
|
3.4
|
23.7
|
1.0
|
CE1
|
E:HIS56
|
3.5
|
19.1
|
1.0
|
CG
|
E:HIS56
|
3.5
|
18.4
|
1.0
|
HE1
|
E:HIS56
|
3.6
|
18.6
|
1.0
|
FE
|
F:FE201
|
3.7
|
31.8
|
0.9
|
CG
|
E:GLU20
|
3.7
|
29.0
|
1.0
|
HB3
|
E:HIS56
|
3.7
|
19.0
|
1.0
|
CB
|
E:HIS56
|
3.7
|
18.9
|
1.0
|
HG3
|
E:GLU20
|
4.0
|
28.8
|
1.0
|
HB3
|
E:GLU20
|
4.0
|
24.9
|
1.0
|
OE1
|
F:GLU124
|
4.0
|
34.4
|
1.0
|
HB3
|
E:GLU53
|
4.0
|
21.8
|
1.0
|
CG
|
E:GLU53
|
4.0
|
22.5
|
1.0
|
CA
|
E:GLU53
|
4.1
|
20.6
|
1.0
|
HE2
|
F:TYR98
|
4.1
|
29.0
|
1.0
|
OE1
|
F:GLU93
|
4.2
|
39.5
|
1.0
|
HE1
|
F:HIS127
|
4.2
|
23.8
|
1.0
|
CB
|
E:GLU53
|
4.3
|
22.1
|
1.0
|
HA
|
E:GLU20
|
4.3
|
22.9
|
1.0
|
HG2
|
F:GLU124
|
4.3
|
28.8
|
1.0
|
HD1
|
F:HIS127
|
4.3
|
23.3
|
0.0
|
CG
|
F:GLU124
|
4.3
|
28.6
|
1.0
|
CB
|
E:GLU20
|
4.4
|
24.3
|
1.0
|
HG3
|
F:GLU124
|
4.4
|
28.8
|
1.0
|
HG2
|
E:GLU20
|
4.4
|
28.6
|
1.0
|
HG3
|
E:GLU53
|
4.5
|
22.5
|
1.0
|
NE2
|
E:HIS56
|
4.6
|
18.0
|
1.0
|
CD2
|
E:HIS56
|
4.7
|
17.9
|
1.0
|
OH
|
F:TYR98
|
4.7
|
26.7
|
1.0
|
HG2
|
E:GLU53
|
4.7
|
22.5
|
1.0
|
N
|
E:GLU53
|
4.8
|
20.3
|
1.0
|
HB3
|
E:ALA23
|
4.8
|
19.2
|
1.0
|
CE1
|
F:HIS127
|
4.8
|
24.4
|
1.0
|
HG
|
F:LEU120
|
4.9
|
26.6
|
1.0
|
ND1
|
F:HIS127
|
4.9
|
23.1
|
1.0
|
CA
|
E:GLU20
|
4.9
|
22.8
|
1.0
|
CE2
|
F:TYR98
|
4.9
|
29.5
|
1.0
|
|
Reference:
D.C.F.Monteiro,
M.E.Snell,
G.R.Budziszewski,
S.E.J.Bowman.
Rubrerythrin From B. Pseudomallei: Iron-Bound To Be Published.
Page generated: Sat Aug 10 04:34:33 2024
|