Iron in PDB 8ib5: Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature

All present enzymatic activity of Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature:
7.1.1.2;

The structure of Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature (pdb code 8ib5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature, PDB code: 8ib5:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:29.6 occ:1.00 FE1 B:SF4301 0.0 29.6 1.0 S3 B:SF4301 2.1 29.6 1.0 S2 B:SF4301 2.1 29.6 1.0 S4 B:SF4301 2.1 29.6 1.0 SG B:CYS99 2.3 29.5 1.0 FE4 B:SF4301 3.0 29.6 1.0 FE2 B:SF4301 3.0 29.6 1.0 FE3 B:SF4301 3.0 29.6 1.0 S1 B:SF4301 3.7 29.6 1.0 CB B:CYS99 3.7 29.5 1.0 NE2 D:HIS223 3.9 28.4 1.0 N B:CYS99 4.0 29.5 1.0 SG B:CYS100 4.1 30.1 1.0 CD2 D:HIS223 4.3 28.4 1.0 N B:CYS100 4.3 30.1 1.0 CA B:CYS99 4.4 29.5 1.0 CB B:ALA98 4.4 30.6 1.0 SG B:CYS164 4.4 29.0 1.0 O B:CYS194 4.6 29.3 1.0 CG D:ARG138 4.7 28.5 1.0 CD D:ARG138 4.7 28.5 1.0 SG B:CYS194 4.7 29.3 1.0 C B:CYS99 4.8 29.5 1.0 NH1 D:ARG118 4.9 30.0 1.0 NE D:ARG138 4.9 28.5 1.0

Iron binding site 2 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:29.6 occ:1.00 FE2 B:SF4301 0.0 29.6 1.0 SG B:CYS164 1.7 29.0 1.0 S4 B:SF4301 2.1 29.6 1.0 S3 B:SF4301 2.1 29.6 1.0 S1 B:SF4301 2.1 29.6 1.0 CB B:CYS164 2.3 29.0 1.0 FE3 B:SF4301 3.0 29.6 1.0 FE1 B:SF4301 3.0 29.6 1.0 FE4 B:SF4301 3.0 29.6 1.0 CA B:CYS164 3.5 29.0 1.0 N B:CYS164 3.6 29.0 1.0 S2 B:SF4301 3.7 29.6 1.0 OG1 B:THR136 4.4 30.6 1.0 SG B:CYS100 4.5 30.1 1.0 SG B:CYS194 4.5 29.3 1.0 C B:CYS164 4.7 29.0 1.0 N B:THR136 4.8 30.6 1.0 C B:SER163 4.8 28.4 1.0 O B:CYS194 4.8 29.3 1.0 OG B:SER163 4.8 28.4 1.0 CA B:GLY135 4.9 30.1 1.0

Iron binding site 3 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:29.6 occ:1.00 FE3 B:SF4301 0.0 29.6 1.0 SG B:CYS194 2.1 29.3 1.0 S1 B:SF4301 2.1 29.6 1.0 S4 B:SF4301 2.1 29.6 1.0 S2 B:SF4301 2.1 29.6 1.0 O B:CYS194 2.7 29.3 1.0 C B:CYS194 2.9 29.3 1.0 FE2 B:SF4301 3.0 29.6 1.0 FE4 B:SF4301 3.0 29.6 1.0 CB B:CYS194 3.0 29.3 1.0 FE1 B:SF4301 3.0 29.6 1.0 CA B:CYS194 3.1 29.3 1.0 S3 B:SF4301 3.7 29.6 1.0 N B:PRO195 3.9 28.6 1.0 NE D:ARG138 3.9 28.5 1.0 SG B:CYS164 4.3 29.0 1.0 SG B:CYS100 4.3 30.1 1.0 CD2 D:HIS223 4.4 28.4 1.0 SG B:CYS99 4.5 29.5 1.0 CD D:ARG138 4.5 28.5 1.0 N B:CYS194 4.5 29.3 1.0 OG B:SER163 4.6 28.4 1.0 CA B:PRO195 4.7 28.6 1.0 O B:GLY193 4.8 27.5 1.0 CD B:PRO195 4.8 28.6 1.0 CZ D:ARG138 4.9 28.5 1.0 NE2 D:HIS223 4.9 28.4 1.0 NH2 D:ARG138 4.9 28.5 1.0

Iron binding site 4 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:29.6 occ:1.00 FE4 B:SF4301 0.0 29.6 1.0 SG B:CYS100 1.5 30.1 1.0 S3 B:SF4301 2.1 29.6 1.0 S2 B:SF4301 2.1 29.6 1.0 S1 B:SF4301 2.1 29.6 1.0 O B:CYS194 2.9 29.3 1.0 FE1 B:SF4301 3.0 29.6 1.0 FE3 B:SF4301 3.0 29.6 1.0 FE2 B:SF4301 3.0 29.6 1.0 CB B:CYS100 3.2 30.1 1.0 S4 B:SF4301 3.7 29.6 1.0 N B:CYS100 3.8 30.1 1.0 SG B:CYS99 3.9 29.5 1.0 CA B:GLY162 4.0 28.7 1.0 CA B:CYS100 4.0 30.1 1.0 C B:CYS194 4.0 29.3 1.0 CB B:CYS164 4.4 29.0 1.0 CD B:PRO196 4.5 28.7 1.0 N B:GLY135 4.5 30.1 1.0 CA B:GLY135 4.5 30.1 1.0 SG B:CYS164 4.7 29.0 1.0 C B:GLY162 4.7 28.7 1.0 N B:CYS164 4.7 29.0 1.0 N B:SER163 4.8 28.4 1.0 CA B:CYS194 4.8 29.3 1.0 CA B:PRO195 4.8 28.6 1.0 N B:PRO195 4.9 28.6 1.0 C B:CYS99 4.9 29.5 1.0 O B:MET161 5.0 30.1 1.0

Iron binding site 5 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe301 b:61.8 occ:1.00 FE1 E:FES301 0.0 61.8 1.0 SG E:CYS139 1.8 56.5 1.0 SG E:CYS134 1.9 56.0 1.0 S1 E:FES301 2.2 61.8 1.0 S2 E:FES301 2.2 61.8 1.0 FE2 E:FES301 3.1 61.8 1.0 CB E:CYS134 3.2 56.0 1.0 CB E:CYS139 3.4 56.5 1.0 CE E:MET184 4.0 59.2 1.0 SG E:CYS179 4.3 58.0 1.0 CA E:CYS175 4.3 54.4 1.0 N E:CYS139 4.4 56.5 1.0 CA E:CYS134 4.4 56.0 1.0 N E:LEU176 4.4 56.3 1.0 CA E:CYS139 4.4 56.5 1.0 O E:ALA182 4.5 59.5 1.0 C E:CYS134 4.6 56.0 1.0 SG E:CYS175 4.6 54.4 1.0 O E:CYS134 4.7 56.0 1.0 O E:ALA178 4.8 58.1 1.0 CB E:CYS175 4.8 54.4 1.0 O E:GLY177 4.8 56.5 1.0 N E:THR136 4.8 53.8 1.0 CB E:THR136 4.9 53.8 1.0 C E:CYS175 4.9 54.4 1.0 CA E:CYS179 4.9 58.0 1.0 OG1 E:THR136 5.0 53.8 1.0

Iron binding site 6 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe301 b:61.8 occ:1.00 FE2 E:FES301 0.0 61.8 1.0 SG E:CYS179 1.5 58.0 1.0 S2 E:FES301 2.2 61.8 1.0 S1 E:FES301 2.2 61.8 1.0 SG E:CYS175 2.7 54.4 1.0 CB E:CYS179 3.0 58.0 1.0 FE1 E:FES301 3.1 61.8 1.0 CA E:CYS179 3.7 58.0 1.0 CB E:CYS175 4.0 54.4 1.0 N E:CYS179 4.0 58.0 1.0 N F:GLY123 4.0 55.9 1.0 CA F:PRO122 4.1 53.9 1.0 N E:GLY177 4.2 56.5 1.0 O E:GLY177 4.3 56.5 1.0 SG E:CYS139 4.3 56.5 1.0 C E:GLY177 4.3 56.5 1.0 CA E:GLY177 4.4 56.5 1.0 CG E:PRO138 4.4 55.6 1.0 CA E:CYS175 4.5 54.4 1.0 CB E:PRO138 4.5 55.6 1.0 C E:ALA178 4.5 58.1 1.0 SG E:CYS134 4.5 56.0 1.0 C F:PRO122 4.6 53.9 1.0 CB F:PRO122 4.6 53.9 1.0 O E:ALA178 4.6 58.1 1.0 N E:LEU176 4.7 56.3 1.0 N E:ALA178 4.9 58.1 1.0 C E:CYS175 4.9 54.4 1.0

Iron binding site 7 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe502 b:44.0 occ:1.00 FE1 F:SF4502 0.0 44.0 1.0 SG F:CYS425 1.8 45.6 1.0 S2 F:SF4502 2.1 44.0 1.0 S3 F:SF4502 2.1 44.0 1.0 S4 F:SF4502 2.1 44.0 1.0 CB F:CYS425 2.9 45.6 1.0 FE4 F:SF4502 3.0 44.0 1.0 FE2 F:SF4502 3.0 44.0 1.0 FE3 F:SF4502 3.0 44.0 1.0 N F:CYS425 3.6 45.6 1.0 S1 F:SF4502 3.7 44.0 1.0 CA F:CYS425 3.8 45.6 1.0 CG F:PRO223 4.2 44.5 1.0 CD1 F:ILE205 4.2 47.3 1.0 SG F:CYS382 4.3 40.3 1.0 SG F:CYS379 4.3 43.1 1.0 C F:CYS425 4.3 45.6 1.0 CB F:LEU427 4.4 47.2 1.0 N F:LEU427 4.6 47.2 1.0 CD F:PRO223 4.6 44.5 1.0 O F:CYS425 4.6 45.6 1.0 C F:ILE424 4.8 41.6 1.0 N F:ALA426 4.9 48.8 1.0 CB F:PRO223 4.9 44.5 1.0 N F:GLY428 5.0 45.6 1.0

Iron binding site 8 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe502 b:44.0 occ:1.00 FE2 F:SF4502 0.0 44.0 1.0 S4 F:SF4502 2.1 44.0 1.0 S1 F:SF4502 2.1 44.0 1.0 S3 F:SF4502 2.1 44.0 1.0 SG F:CYS385 2.6 40.0 1.0 FE3 F:SF4502 3.0 44.0 1.0 FE1 F:SF4502 3.0 44.0 1.0 FE4 F:SF4502 3.0 44.0 1.0 CB F:CYS385 3.1 40.0 1.0 CB F:SER378 3.4 43.6 1.0 CD2 F:LEU427 3.6 47.2 1.0 S2 F:SF4502 3.7 44.0 1.0 SG F:CYS382 4.0 40.3 1.0 CA F:SER378 4.2 43.6 1.0 SG F:CYS425 4.2 45.6 1.0 SG F:CYS379 4.2 43.1 1.0 N F:CYS379 4.3 43.1 1.0 OG F:SER378 4.3 43.6 1.0 CB F:LEU427 4.3 47.2 1.0 CG F:LEU427 4.4 47.2 1.0 C F:SER378 4.6 43.6 1.0 CA F:CYS385 4.6 40.0 1.0 N F:GLY428 4.6 45.6 1.0 N F:GLY380 4.8 41.1 1.0

Iron binding site 9 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe502 b:44.0 occ:1.00 FE3 F:SF4502 0.0 44.0 1.0 SG F:CYS382 1.4 40.3 1.0 S4 F:SF4502 2.1 44.0 1.0 S2 F:SF4502 2.1 44.0 1.0 S1 F:SF4502 2.1 44.0 1.0 CB F:CYS382 2.9 40.3 1.0 FE2 F:SF4502 3.0 44.0 1.0 FE1 F:SF4502 3.0 44.0 1.0 FE4 F:SF4502 3.0 44.0 1.0 N F:CYS382 3.5 40.3 1.0 S3 F:SF4502 3.7 44.0 1.0 CB F:CYS385 3.7 40.0 1.0 CA F:CYS382 3.7 40.3 1.0 O F:CYS382 4.2 40.3 1.0 SG F:CYS379 4.3 43.1 1.0 N F:ILE424 4.3 41.6 1.0 C F:CYS382 4.4 40.3 1.0 CB F:ILE424 4.5 41.6 1.0 SG F:CYS425 4.6 45.6 1.0 SG F:CYS385 4.6 40.0 1.0 N F:CYS425 4.6 45.6 1.0 C F:GLN381 4.7 40.7 1.0 CG2 F:THR423 4.7 40.9 1.0 CB F:THR423 4.8 40.9 1.0 N F:GLN381 4.8 40.7 1.0 CA F:ILE424 4.9 41.6 1.0 CA F:CYS385 4.9 40.0 1.0 N F:CYS385 4.9 40.0 1.0

Iron binding site 10 out of 28 in the Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe502 b:44.0 occ:1.00 FE4 F:SF4502 0.0 44.0 1.0 SG F:CYS379 1.4 43.1 1.0 S3 F:SF4502 2.1 44.0 1.0 S1 F:SF4502 2.1 44.0 1.0 S2 F:SF4502 2.1 44.0 1.0 FE1 F:SF4502 3.0 44.0 1.0 CB F:CYS379 3.0 43.1 1.0 FE3 F:SF4502 3.0 44.0 1.0 FE2 F:SF4502 3.0 44.0 1.0 N F:CYS379 3.5 43.1 1.0 N F:GLY380 3.7 41.1 1.0 S4 F:SF4502 3.7 44.0 1.0 CA F:CYS379 3.7 43.1 1.0 N F:GLN381 3.8 40.7 1.0 C F:CYS379 4.1 43.1 1.0 CB F:GLN381 4.1 40.7 1.0 CD F:PRO223 4.2 44.5 1.0 SG F:CYS382 4.3 40.3 1.0 N F:CYS382 4.5 40.3 1.0 CA F:GLN381 4.5 40.7 1.0 C F:SER378 4.6 43.6 1.0 SG F:CYS425 4.7 45.6 1.0 CA F:GLY380 4.7 41.1 1.0 C F:GLY380 4.7 41.1 1.0 CG F:PRO223 4.8 44.5 1.0 CD1 F:ILE205 4.9 47.3 1.0 OE1 F:GLN381 5.0 40.7 1.0

Y.-C.Shin, M.Liao. Respiratory Complex Peripheral Arm of Ci, Focus-Refined Map of Type Ia, Wild Type Mouse Under Cold Temperature To Be Published.