Iron in PDB 8ijy: Synechococcus Elongatus 6-4 Photolyase with An 8-Hdf As the Antenna Chromophore and A Covalently Linked Fad As the Catalytic Cofactor

The structure of Synechococcus Elongatus 6-4 Photolyase with An 8-Hdf As the Antenna Chromophore and A Covalently Linked Fad As the Catalytic Cofactor, PDB code: 8ijy was solved by Y.Liu, L.Xu, P.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	75.71 / 2.38
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	105.116, 109.136, 95.217, 90, 90, 90
R / Rfree (%)	15.1 / 19

The binding sites of Iron atom in the Synechococcus Elongatus 6-4 Photolyase with An 8-Hdf As the Antenna Chromophore and A Covalently Linked Fad As the Catalytic Cofactor (pdb code 8ijy). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Synechococcus Elongatus 6-4 Photolyase with An 8-Hdf As the Antenna Chromophore and A Covalently Linked Fad As the Catalytic Cofactor, PDB code: 8ijy:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Synechococcus Elongatus 6-4 Photolyase with An 8-Hdf As the Antenna Chromophore and A Covalently Linked Fad As the Catalytic Cofactor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Synechococcus Elongatus 6-4 Photolyase with An 8-Hdf As the Antenna Chromophore and A Covalently Linked Fad As the Catalytic Cofactor within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:29.6 occ:1.00 FE1 A:SF4601 0.0 29.6 1.0 S4 A:SF4601 2.1 28.9 1.0 S3 A:SF4601 2.1 30.2 1.0 S2 A:SF4601 2.2 31.5 1.0 SG A:CYS437 2.2 32.2 1.0 FE3 A:SF4601 2.7 29.0 1.0 FE2 A:SF4601 2.8 30.7 1.0 FE4 A:SF4601 2.8 30.1 1.0 CB A:CYS437 3.1 30.7 1.0 S1 A:SF4601 3.7 31.4 1.0 N A:HIS345 4.0 27.5 1.0 CB A:TYR439 4.2 30.9 1.0 CD2 A:TYR439 4.4 31.1 1.0 O A:TYR439 4.6 28.1 1.0 CA A:CYS437 4.6 34.1 1.0 CB A:HIS345 4.6 29.8 1.0 CA A:LEU344 4.6 27.4 1.0 CA A:CYS434 4.7 32.9 1.0 C A:LEU344 4.7 26.3 1.0 SG A:CYS346 4.7 27.7 1.0 SG A:CYS450 4.8 28.4 1.0 CG A:TYR439 4.8 31.1 1.0 N A:CYS346 4.8 27.9 1.0 N A:TYR439 4.8 31.9 1.0 SG A:CYS434 4.9 30.8 1.0 CA A:HIS345 4.9 29.7 1.0 CA A:TYR439 4.9 31.0 1.0 C A:TYR439 5.0 30.7 1.0

Iron binding site 2 out of 4 in the Synechococcus Elongatus 6-4 Photolyase with An 8-Hdf As the Antenna Chromophore and A Covalently Linked Fad As the Catalytic Cofactor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Synechococcus Elongatus 6-4 Photolyase with An 8-Hdf As the Antenna Chromophore and A Covalently Linked Fad As the Catalytic Cofactor within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:30.7 occ:1.00 FE2 A:SF4601 0.0 30.7 1.0 S3 A:SF4601 2.1 30.2 1.0 S4 A:SF4601 2.1 28.9 1.0 S1 A:SF4601 2.1 31.4 1.0 SG A:CYS346 2.2 27.7 1.0 FE3 A:SF4601 2.8 29.0 1.0 FE4 A:SF4601 2.8 30.1 1.0 FE1 A:SF4601 2.8 29.6 1.0 CB A:CYS346 3.1 26.7 1.0 N A:CYS346 3.7 27.9 1.0 S2 A:SF4601 3.7 31.5 1.0 CA A:CYS346 4.1 26.9 1.0 CE1 A:PHE452 4.2 30.0 1.0 CD1 A:PHE452 4.4 30.5 1.0 N A:HIS345 4.5 27.5 1.0 CG2 A:ILE427 4.5 31.3 1.0 SG A:CYS450 4.7 28.4 1.0 CD1 A:ILE427 4.8 31.7 1.0 SG A:CYS437 4.8 32.2 1.0 SG A:CYS434 4.8 30.8 1.0 C A:LEU344 4.9 26.3 1.0 C A:HIS345 4.9 27.4 1.0 CB A:LEU344 5.0 29.1 1.0

Iron binding site 3 out of 4 in the Synechococcus Elongatus 6-4 Photolyase with An 8-Hdf As the Antenna Chromophore and A Covalently Linked Fad As the Catalytic Cofactor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Synechococcus Elongatus 6-4 Photolyase with An 8-Hdf As the Antenna Chromophore and A Covalently Linked Fad As the Catalytic Cofactor within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:29.0 occ:1.00 FE3 A:SF4601 0.0 29.0 1.0 S1 A:SF4601 2.1 31.4 1.0 S4 A:SF4601 2.2 28.9 1.0 S2 A:SF4601 2.2 31.5 1.0 SG A:CYS450 2.3 28.4 1.0 FE1 A:SF4601 2.7 29.6 1.0 FE4 A:SF4601 2.8 30.1 1.0 FE2 A:SF4601 2.8 30.7 1.0 CB A:CYS450 3.2 28.3 1.0 S3 A:SF4601 3.6 30.2 1.0 CA A:CYS450 4.0 27.3 1.0 CD1 A:PHE452 4.1 30.5 1.0 CB A:ALA424 4.4 30.9 1.0 CE1 A:PHE452 4.7 30.0 1.0 SG A:CYS346 4.7 27.7 1.0 SG A:CYS434 4.8 30.8 1.0 SG A:CYS437 4.8 32.2 1.0 C A:CYS450 4.8 27.6 1.0 CB A:TYR439 4.8 30.9 1.0 CD A:PRO451 4.9 32.5 1.0 CG A:PHE452 4.9 31.4 1.0 CB A:PHE452 5.0 30.9 1.0 N A:PRO451 5.0 30.1 1.0

Iron binding site 4 out of 4 in the Synechococcus Elongatus 6-4 Photolyase with An 8-Hdf As the Antenna Chromophore and A Covalently Linked Fad As the Catalytic Cofactor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Synechococcus Elongatus 6-4 Photolyase with An 8-Hdf As the Antenna Chromophore and A Covalently Linked Fad As the Catalytic Cofactor within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:30.1 occ:1.00 FE4 A:SF4601 0.0 30.1 1.0 S1 A:SF4601 2.1 31.4 1.0 S3 A:SF4601 2.1 30.2 1.0 S2 A:SF4601 2.1 31.5 1.0 SG A:CYS434 2.2 30.8 1.0 FE3 A:SF4601 2.8 29.0 1.0 FE2 A:SF4601 2.8 30.7 1.0 FE1 A:SF4601 2.8 29.6 1.0 CB A:CYS434 3.2 31.7 1.0 CA A:CYS434 3.4 32.9 1.0 S4 A:SF4601 3.7 28.9 1.0 N A:CYS434 4.0 30.7 1.0 CB A:PRO441 4.5 31.0 1.0 CG2 A:ILE427 4.6 31.3 1.0 CB A:CYS437 4.7 30.7 1.0 C A:TYR433 4.7 29.4 1.0 SG A:CYS437 4.7 32.2 1.0 SG A:CYS450 4.8 28.4 1.0 C A:CYS434 4.8 37.5 1.0 SG A:CYS346 4.9 27.7 1.0

Y.Liu, L.Xu, P.Zhang. Synechococcus Elongatus 6-4 Photolyase with An 8-Hdf As the Antenna Chromophore and A Covalently Linked Fad As the Catalytic Cofactor To Be Published.