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Iron in PDB 8ir5: Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions
Enzymatic activity of Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions
All present enzymatic activity of Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions:
1.10.3.9;
1.10.3.9;
Protein crystallography data
The structure of Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions, PDB code: 8ir5
was solved by
H.Li,
M.Suga,
J.R.Shen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 19.98 / 2.15 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 125.75, 231.6, 288.28, 90, 90, 90 |
| R / Rfree (%) | 14.5 / 17.5 |
Other elements in 8ir5:
The structure of Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions also contains other interesting chemical elements:
| Chlorine | (Cl) | 4 atoms |
| Manganese | (Mn) | 8 atoms |
| Magnesium | (Mg) | 72 atoms |
| Calcium | (Ca) | 9 atoms |
Iron Binding Sites:
The binding sites of Iron atom in the Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions
(pdb code 8ir5). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions, PDB code: 8ir5:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Iron where determined in the Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions, PDB code: 8ir5:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;
Iron binding site 1 out of 6 in 8ir5
Go back to
Iron Binding Sites List in 8ir5
Iron binding site 1 out
of 6 in the Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions within 5.0Å range:
|
Iron binding site 2 out of 6 in 8ir5
Go back to
Iron Binding Sites List in 8ir5
Iron binding site 2 out
of 6 in the Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions within 5.0Å range:
|
Iron binding site 3 out of 6 in 8ir5
Go back to
Iron Binding Sites List in 8ir5
Iron binding site 3 out
of 6 in the Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions within 5.0Å range:
|
Iron binding site 4 out of 6 in 8ir5
Go back to
Iron Binding Sites List in 8ir5
Iron binding site 4 out
of 6 in the Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions within 5.0Å range:
|
Iron binding site 5 out of 6 in 8ir5
Go back to
Iron Binding Sites List in 8ir5
Iron binding site 5 out
of 6 in the Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions within 5.0Å range:
|
Iron binding site 6 out of 6 in 8ir5
Go back to
Iron Binding Sites List in 8ir5
Iron binding site 6 out
of 6 in the Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Xfel Structure of Cyanobacterial Photosystem II Under Dark Conditions within 5.0Å range:
|
Reference:
H.Li,
Y.Nakajima,
E.Nango,
S.Owada,
D.Yamada,
K.Hashimoto,
F.Luo,
R.Tanaka,
F.Akita,
K.Kato,
J.M.Kang,
Y.Saitoh,
S.Kishi,
H.Yu,
N.Matsubara,
H.Fujii,
M.Sugahara,
M.Suzuki,
T.Masuda,
T.Kimura,
T.N.Thao,
S.Yonekura,
L.J.Yu,
T.Tosha,
K.Tono,
Y.Joti,
T.Hatsui,
M.Yabashi,
M.Kubo,
S.Iwata,
H.Isobe,
K.Yamaguchi,
M.Suga,
J.R.Shen.
Oxygen-Evolving Photosystem II Structures During S1-S2-S3 Transitions. Nature 2024.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06987-5
Page generated: Sat Aug 10 06:00:42 2024
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06987-5
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