Iron in PDB 8pnv: Cryo-Em Structure of Styrene Oxide Isomerase
Iron Binding Sites:
The binding sites of Iron atom in the Cryo-Em Structure of Styrene Oxide Isomerase
(pdb code 8pnv). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the
Cryo-Em Structure of Styrene Oxide Isomerase, PDB code: 8pnv:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
Iron binding site 1 out
of 6 in 8pnv
Go back to
Iron Binding Sites List in 8pnv
Iron binding site 1 out
of 6 in the Cryo-Em Structure of Styrene Oxide Isomerase
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryo-Em Structure of Styrene Oxide Isomerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:20.4
occ:1.00
|
FE
|
A:HEM201
|
0.0
|
20.4
|
1.0
|
|
NB
|
A:HEM201
|
2.0
|
9.9
|
1.0
|
|
NC
|
A:HEM201
|
2.0
|
11.8
|
1.0
|
|
ND
|
A:HEM201
|
2.0
|
9.4
|
1.0
|
|
NA
|
A:HEM201
|
2.0
|
7.9
|
1.0
|
|
NE2
|
C:HIS58
|
2.2
|
3.2
|
1.0
|
|
C4B
|
A:HEM201
|
3.0
|
10.0
|
1.0
|
|
C1C
|
A:HEM201
|
3.0
|
8.3
|
1.0
|
|
C4D
|
A:HEM201
|
3.0
|
9.8
|
1.0
|
|
C1A
|
A:HEM201
|
3.1
|
4.2
|
1.0
|
|
C1B
|
A:HEM201
|
3.1
|
7.4
|
1.0
|
|
C1D
|
A:HEM201
|
3.1
|
9.2
|
1.0
|
|
C4C
|
A:HEM201
|
3.1
|
7.5
|
1.0
|
|
C4A
|
A:HEM201
|
3.1
|
1.9
|
1.0
|
|
CE1
|
C:HIS58
|
3.1
|
4.1
|
1.0
|
|
CD2
|
C:HIS58
|
3.2
|
0.0
|
1.0
|
|
CHC
|
A:HEM201
|
3.4
|
4.8
|
1.0
|
|
CHA
|
A:HEM201
|
3.4
|
3.5
|
1.0
|
|
CHB
|
A:HEM201
|
3.4
|
5.6
|
1.0
|
|
CHD
|
A:HEM201
|
3.4
|
1.4
|
1.0
|
|
OH
|
A:TYR103
|
3.9
|
8.8
|
1.0
|
|
C3B
|
A:HEM201
|
4.2
|
13.9
|
1.0
|
|
ND1
|
C:HIS58
|
4.3
|
7.0
|
1.0
|
|
C2B
|
A:HEM201
|
4.3
|
13.0
|
1.0
|
|
C3D
|
A:HEM201
|
4.3
|
14.6
|
1.0
|
|
C2C
|
A:HEM201
|
4.3
|
12.4
|
1.0
|
|
C2D
|
A:HEM201
|
4.3
|
11.9
|
1.0
|
|
C2A
|
A:HEM201
|
4.3
|
13.0
|
1.0
|
|
C3C
|
A:HEM201
|
4.3
|
13.2
|
1.0
|
|
C3A
|
A:HEM201
|
4.3
|
11.8
|
1.0
|
|
CG
|
C:HIS58
|
4.3
|
9.8
|
1.0
|
|
CE1
|
A:TYR103
|
4.8
|
11.7
|
1.0
|
|
CZ
|
A:TYR103
|
4.8
|
8.3
|
1.0
|
|
Iron binding site 2 out
of 6 in 8pnv
Go back to
Iron Binding Sites List in 8pnv
Iron binding site 2 out
of 6 in the Cryo-Em Structure of Styrene Oxide Isomerase
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryo-Em Structure of Styrene Oxide Isomerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:20.4
occ:1.00
|
FE
|
B:HEM201
|
0.0
|
20.4
|
1.0
|
|
NB
|
B:HEM201
|
2.0
|
9.9
|
1.0
|
|
NC
|
B:HEM201
|
2.0
|
11.8
|
1.0
|
|
ND
|
B:HEM201
|
2.0
|
9.4
|
1.0
|
|
NA
|
B:HEM201
|
2.0
|
7.9
|
1.0
|
|
NE2
|
A:HIS58
|
2.2
|
3.2
|
1.0
|
|
C4B
|
B:HEM201
|
3.0
|
10.0
|
1.0
|
|
C1C
|
B:HEM201
|
3.0
|
8.3
|
1.0
|
|
C4D
|
B:HEM201
|
3.0
|
9.8
|
1.0
|
|
C1A
|
B:HEM201
|
3.1
|
4.2
|
1.0
|
|
C1B
|
B:HEM201
|
3.1
|
7.4
|
1.0
|
|
C1D
|
B:HEM201
|
3.1
|
9.2
|
1.0
|
|
C4C
|
B:HEM201
|
3.1
|
7.5
|
1.0
|
|
C4A
|
B:HEM201
|
3.1
|
1.9
|
1.0
|
|
CE1
|
A:HIS58
|
3.1
|
4.1
|
1.0
|
|
CD2
|
A:HIS58
|
3.2
|
0.0
|
1.0
|
|
CHC
|
B:HEM201
|
3.4
|
4.8
|
1.0
|
|
CHA
|
B:HEM201
|
3.4
|
3.5
|
1.0
|
|
CHB
|
B:HEM201
|
3.4
|
5.6
|
1.0
|
|
CHD
|
B:HEM201
|
3.4
|
1.4
|
1.0
|
|
OH
|
B:TYR103
|
3.9
|
8.8
|
1.0
|
|
C3B
|
B:HEM201
|
4.2
|
13.9
|
1.0
|
|
ND1
|
A:HIS58
|
4.3
|
7.0
|
1.0
|
|
C2B
|
B:HEM201
|
4.3
|
13.0
|
1.0
|
|
C3D
|
B:HEM201
|
4.3
|
14.6
|
1.0
|
|
C2C
|
B:HEM201
|
4.3
|
12.4
|
1.0
|
|
C2D
|
B:HEM201
|
4.3
|
11.9
|
1.0
|
|
C2A
|
B:HEM201
|
4.3
|
13.0
|
1.0
|
|
C3C
|
B:HEM201
|
4.3
|
13.2
|
1.0
|
|
C3A
|
B:HEM201
|
4.3
|
11.8
|
1.0
|
|
CG
|
A:HIS58
|
4.3
|
9.8
|
1.0
|
|
CE1
|
B:TYR103
|
4.8
|
11.7
|
1.0
|
|
CZ
|
B:TYR103
|
4.8
|
8.3
|
1.0
|
|
Iron binding site 3 out
of 6 in 8pnv
Go back to
Iron Binding Sites List in 8pnv
Iron binding site 3 out
of 6 in the Cryo-Em Structure of Styrene Oxide Isomerase
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryo-Em Structure of Styrene Oxide Isomerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:20.4
occ:1.00
|
FE
|
C:HEM201
|
0.0
|
20.4
|
1.0
|
|
NB
|
C:HEM201
|
2.0
|
9.9
|
1.0
|
|
NC
|
C:HEM201
|
2.0
|
11.8
|
1.0
|
|
ND
|
C:HEM201
|
2.0
|
9.4
|
1.0
|
|
NA
|
C:HEM201
|
2.0
|
7.9
|
1.0
|
|
NE2
|
B:HIS58
|
2.2
|
3.2
|
1.0
|
|
C4B
|
C:HEM201
|
3.0
|
10.0
|
1.0
|
|
C1C
|
C:HEM201
|
3.0
|
8.3
|
1.0
|
|
C4D
|
C:HEM201
|
3.0
|
9.8
|
1.0
|
|
C1A
|
C:HEM201
|
3.1
|
4.2
|
1.0
|
|
C1B
|
C:HEM201
|
3.1
|
7.4
|
1.0
|
|
C1D
|
C:HEM201
|
3.1
|
9.2
|
1.0
|
|
C4C
|
C:HEM201
|
3.1
|
7.5
|
1.0
|
|
C4A
|
C:HEM201
|
3.1
|
1.9
|
1.0
|
|
CE1
|
B:HIS58
|
3.1
|
4.1
|
1.0
|
|
CD2
|
B:HIS58
|
3.2
|
0.0
|
1.0
|
|
CHC
|
C:HEM201
|
3.4
|
4.8
|
1.0
|
|
CHA
|
C:HEM201
|
3.4
|
3.5
|
1.0
|
|
CHB
|
C:HEM201
|
3.4
|
5.6
|
1.0
|
|
CHD
|
C:HEM201
|
3.4
|
1.4
|
1.0
|
|
OH
|
C:TYR103
|
3.9
|
8.8
|
1.0
|
|
C3B
|
C:HEM201
|
4.2
|
13.9
|
1.0
|
|
ND1
|
B:HIS58
|
4.3
|
7.0
|
1.0
|
|
C2B
|
C:HEM201
|
4.3
|
13.0
|
1.0
|
|
C3D
|
C:HEM201
|
4.3
|
14.6
|
1.0
|
|
C2C
|
C:HEM201
|
4.3
|
12.4
|
1.0
|
|
C2D
|
C:HEM201
|
4.3
|
11.9
|
1.0
|
|
C2A
|
C:HEM201
|
4.3
|
13.0
|
1.0
|
|
C3C
|
C:HEM201
|
4.3
|
13.2
|
1.0
|
|
C3A
|
C:HEM201
|
4.3
|
11.8
|
1.0
|
|
CG
|
B:HIS58
|
4.3
|
9.8
|
1.0
|
|
CE1
|
C:TYR103
|
4.8
|
11.7
|
1.0
|
|
CZ
|
C:TYR103
|
4.8
|
8.3
|
1.0
|
|
Iron binding site 4 out
of 6 in 8pnv
Go back to
Iron Binding Sites List in 8pnv
Iron binding site 4 out
of 6 in the Cryo-Em Structure of Styrene Oxide Isomerase
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryo-Em Structure of Styrene Oxide Isomerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe201
b:20.4
occ:1.00
|
FE
|
G:HEM201
|
0.0
|
20.4
|
1.0
|
|
NB
|
G:HEM201
|
2.0
|
9.9
|
1.0
|
|
NC
|
G:HEM201
|
2.0
|
11.8
|
1.0
|
|
ND
|
G:HEM201
|
2.0
|
9.4
|
1.0
|
|
NA
|
G:HEM201
|
2.0
|
7.9
|
1.0
|
|
NE2
|
I:HIS58
|
2.2
|
3.2
|
1.0
|
|
C4B
|
G:HEM201
|
3.0
|
10.0
|
1.0
|
|
C1C
|
G:HEM201
|
3.0
|
8.3
|
1.0
|
|
C4D
|
G:HEM201
|
3.0
|
9.8
|
1.0
|
|
C1A
|
G:HEM201
|
3.1
|
4.2
|
1.0
|
|
C1B
|
G:HEM201
|
3.1
|
7.4
|
1.0
|
|
C1D
|
G:HEM201
|
3.1
|
9.2
|
1.0
|
|
C4C
|
G:HEM201
|
3.1
|
7.5
|
1.0
|
|
C4A
|
G:HEM201
|
3.1
|
1.9
|
1.0
|
|
CE1
|
I:HIS58
|
3.1
|
4.1
|
1.0
|
|
CD2
|
I:HIS58
|
3.2
|
0.0
|
1.0
|
|
CHC
|
G:HEM201
|
3.4
|
4.8
|
1.0
|
|
CHA
|
G:HEM201
|
3.4
|
3.5
|
1.0
|
|
CHB
|
G:HEM201
|
3.4
|
5.6
|
1.0
|
|
CHD
|
G:HEM201
|
3.4
|
1.4
|
1.0
|
|
OH
|
G:TYR103
|
3.9
|
8.8
|
1.0
|
|
C3B
|
G:HEM201
|
4.2
|
13.9
|
1.0
|
|
ND1
|
I:HIS58
|
4.3
|
7.0
|
1.0
|
|
C2B
|
G:HEM201
|
4.3
|
13.0
|
1.0
|
|
C3D
|
G:HEM201
|
4.3
|
14.6
|
1.0
|
|
C2C
|
G:HEM201
|
4.3
|
12.4
|
1.0
|
|
C2D
|
G:HEM201
|
4.3
|
11.9
|
1.0
|
|
C2A
|
G:HEM201
|
4.3
|
13.0
|
1.0
|
|
C3C
|
G:HEM201
|
4.3
|
13.2
|
1.0
|
|
C3A
|
G:HEM201
|
4.3
|
11.8
|
1.0
|
|
CG
|
I:HIS58
|
4.3
|
9.8
|
1.0
|
|
CE1
|
G:TYR103
|
4.8
|
11.7
|
1.0
|
|
CZ
|
G:TYR103
|
4.8
|
8.3
|
1.0
|
|
Iron binding site 5 out
of 6 in 8pnv
Go back to
Iron Binding Sites List in 8pnv
Iron binding site 5 out
of 6 in the Cryo-Em Structure of Styrene Oxide Isomerase
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cryo-Em Structure of Styrene Oxide Isomerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe201
b:20.4
occ:1.00
|
FE
|
H:HEM201
|
0.0
|
20.4
|
1.0
|
|
NB
|
H:HEM201
|
2.0
|
9.9
|
1.0
|
|
NC
|
H:HEM201
|
2.0
|
11.8
|
1.0
|
|
ND
|
H:HEM201
|
2.0
|
9.4
|
1.0
|
|
NA
|
H:HEM201
|
2.0
|
7.9
|
1.0
|
|
NE2
|
G:HIS58
|
2.2
|
3.2
|
1.0
|
|
C4B
|
H:HEM201
|
3.0
|
10.0
|
1.0
|
|
C1C
|
H:HEM201
|
3.0
|
8.3
|
1.0
|
|
C4D
|
H:HEM201
|
3.0
|
9.8
|
1.0
|
|
C1A
|
H:HEM201
|
3.1
|
4.2
|
1.0
|
|
C1B
|
H:HEM201
|
3.1
|
7.4
|
1.0
|
|
C1D
|
H:HEM201
|
3.1
|
9.2
|
1.0
|
|
C4C
|
H:HEM201
|
3.1
|
7.5
|
1.0
|
|
C4A
|
H:HEM201
|
3.1
|
1.9
|
1.0
|
|
CE1
|
G:HIS58
|
3.1
|
4.1
|
1.0
|
|
CD2
|
G:HIS58
|
3.2
|
0.0
|
1.0
|
|
CHC
|
H:HEM201
|
3.4
|
4.8
|
1.0
|
|
CHA
|
H:HEM201
|
3.4
|
3.5
|
1.0
|
|
CHB
|
H:HEM201
|
3.4
|
5.6
|
1.0
|
|
CHD
|
H:HEM201
|
3.4
|
1.4
|
1.0
|
|
OH
|
H:TYR103
|
3.9
|
8.8
|
1.0
|
|
C3B
|
H:HEM201
|
4.2
|
13.9
|
1.0
|
|
ND1
|
G:HIS58
|
4.3
|
7.0
|
1.0
|
|
C2B
|
H:HEM201
|
4.3
|
13.0
|
1.0
|
|
C3D
|
H:HEM201
|
4.3
|
14.6
|
1.0
|
|
C2C
|
H:HEM201
|
4.3
|
12.4
|
1.0
|
|
C2D
|
H:HEM201
|
4.3
|
11.9
|
1.0
|
|
C2A
|
H:HEM201
|
4.3
|
13.0
|
1.0
|
|
C3C
|
H:HEM201
|
4.3
|
13.2
|
1.0
|
|
C3A
|
H:HEM201
|
4.3
|
11.8
|
1.0
|
|
CG
|
G:HIS58
|
4.3
|
9.8
|
1.0
|
|
CE1
|
H:TYR103
|
4.8
|
11.7
|
1.0
|
|
CZ
|
H:TYR103
|
4.8
|
8.3
|
1.0
|
|
Iron binding site 6 out
of 6 in 8pnv
Go back to
Iron Binding Sites List in 8pnv
Iron binding site 6 out
of 6 in the Cryo-Em Structure of Styrene Oxide Isomerase
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cryo-Em Structure of Styrene Oxide Isomerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe201
b:20.4
occ:1.00
|
FE
|
I:HEM201
|
0.0
|
20.4
|
1.0
|
|
NB
|
I:HEM201
|
2.0
|
9.9
|
1.0
|
|
NC
|
I:HEM201
|
2.0
|
11.8
|
1.0
|
|
ND
|
I:HEM201
|
2.0
|
9.4
|
1.0
|
|
NA
|
I:HEM201
|
2.0
|
7.9
|
1.0
|
|
NE2
|
H:HIS58
|
2.2
|
3.2
|
1.0
|
|
C4B
|
I:HEM201
|
3.0
|
10.0
|
1.0
|
|
C1C
|
I:HEM201
|
3.0
|
8.3
|
1.0
|
|
C4D
|
I:HEM201
|
3.0
|
9.8
|
1.0
|
|
C1A
|
I:HEM201
|
3.1
|
4.2
|
1.0
|
|
C1B
|
I:HEM201
|
3.1
|
7.4
|
1.0
|
|
C1D
|
I:HEM201
|
3.1
|
9.2
|
1.0
|
|
C4C
|
I:HEM201
|
3.1
|
7.5
|
1.0
|
|
C4A
|
I:HEM201
|
3.1
|
1.9
|
1.0
|
|
CE1
|
H:HIS58
|
3.1
|
4.1
|
1.0
|
|
CD2
|
H:HIS58
|
3.2
|
0.0
|
1.0
|
|
CHC
|
I:HEM201
|
3.4
|
4.8
|
1.0
|
|
CHA
|
I:HEM201
|
3.4
|
3.5
|
1.0
|
|
CHB
|
I:HEM201
|
3.4
|
5.6
|
1.0
|
|
CHD
|
I:HEM201
|
3.4
|
1.4
|
1.0
|
|
OH
|
I:TYR103
|
3.9
|
8.8
|
1.0
|
|
C3B
|
I:HEM201
|
4.2
|
13.9
|
1.0
|
|
ND1
|
H:HIS58
|
4.3
|
7.0
|
1.0
|
|
C2B
|
I:HEM201
|
4.3
|
13.0
|
1.0
|
|
C3D
|
I:HEM201
|
4.3
|
14.6
|
1.0
|
|
C2C
|
I:HEM201
|
4.3
|
12.4
|
1.0
|
|
C2D
|
I:HEM201
|
4.3
|
11.9
|
1.0
|
|
C2A
|
I:HEM201
|
4.3
|
13.0
|
1.0
|
|
C3C
|
I:HEM201
|
4.3
|
13.2
|
1.0
|
|
C3A
|
I:HEM201
|
4.3
|
11.8
|
1.0
|
|
CG
|
H:HIS58
|
4.3
|
9.8
|
1.0
|
|
CE1
|
I:TYR103
|
4.8
|
11.7
|
1.0
|
|
CZ
|
I:TYR103
|
4.8
|
8.3
|
1.0
|
|
Reference:
B.Khanppnavar,
B.Korkhov,
X.Li.
Cryo-Em Structure of Styrene Oxide Isomerase To Be Published.
Page generated: Sat Aug 10 09:01:13 2024
|
