Iron in PDB 8ptz: Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine

The structure of Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Iron atom in the Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine (pdb code 8ptz). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine, PDB code: 8ptz:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe601 b:182.9 occ:1.00 FE1 C:SF4601 0.0 182.9 1.0 SG C:CYS99 2.3 144.9 1.0 S2 C:SF4601 2.3 175.6 1.0 S3 C:SF4601 2.3 179.4 1.0 S4 C:SF4601 2.3 170.3 1.0 FE4 C:SF4601 2.7 177.8 1.0 FE2 C:SF4601 2.7 176.3 1.0 FE3 C:SF4601 2.7 183.2 1.0 CB C:CYS99 3.5 133.4 1.0 N C:MET604 3.8 136.6 1.0 S1 C:SF4601 3.9 183.5 1.0 CG C:GLN125 4.2 129.8 1.0 CE1 C:HIS101 4.4 133.1 1.0 SG C:CYS112 4.6 144.2 1.0 SG C:CYS109 4.8 155.9 1.0 CA C:CYS99 4.9 128.9 1.0 OXT C:MET604 4.9 138.7 1.0 OG C:SER126 5.0 134.4 1.0

Iron binding site 2 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe601 b:176.3 occ:1.00 FE2 C:SF4601 0.0 176.3 1.0 S3 C:SF4601 2.3 179.4 1.0 S1 C:SF4601 2.3 183.5 1.0 S4 C:SF4601 2.3 170.3 1.0 OXT C:MET604 2.7 138.7 1.0 FE4 C:SF4601 2.7 177.8 1.0 FE3 C:SF4601 2.7 183.2 1.0 FE1 C:SF4601 2.7 182.9 1.0 N C:MET604 2.8 136.6 1.0 NH1 C:ARG260 3.6 122.0 1.0 C C:MET604 3.6 141.9 1.0 SD C:MET604 3.7 140.4 1.0 CA C:MET604 3.8 139.2 1.0 S2 C:SF4601 3.9 175.6 1.0 OG C:SER126 4.2 134.4 1.0 CZ C:ARG260 4.6 118.2 1.0 CG C:MET604 4.7 139.8 1.0 NH2 C:ARG260 4.7 117.3 1.0 O3' C:5AD602 4.7 107.0 1.0 O C:MET604 4.7 145.1 1.0 SG C:CYS109 4.7 155.9 1.0 CB C:MET604 4.8 139.8 1.0 SG C:CYS112 4.8 144.2 1.0 SG C:CYS99 4.9 144.9 1.0 C3' C:5AD602 5.0 115.7 1.0

Iron binding site 3 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe601 b:183.2 occ:1.00 FE3 C:SF4601 0.0 183.2 1.0 SG C:CYS109 2.3 155.9 1.0 S2 C:SF4601 2.3 175.6 1.0 S1 C:SF4601 2.3 183.5 1.0 S4 C:SF4601 2.3 170.3 1.0 FE2 C:SF4601 2.7 176.3 1.0 FE4 C:SF4601 2.7 177.8 1.0 FE1 C:SF4601 2.7 182.9 1.0 CB C:CYS109 3.0 142.6 1.0 NH1 C:ARG260 3.2 122.0 1.0 S3 C:SF4601 3.9 179.4 1.0 CE1 C:HIS101 4.0 133.1 1.0 N C:CYS109 4.0 144.1 1.0 CA C:CYS109 4.1 143.3 1.0 NE2 C:HIS101 4.1 133.8 1.0 CZ C:ARG260 4.5 118.2 1.0 OXT C:MET604 4.6 138.7 1.0 CB C:CYS112 4.7 131.6 1.0 SG C:CYS99 4.7 144.9 1.0 SG C:CYS112 4.8 144.2 1.0 NH1 C:ARG223 4.9 123.1 1.0

Iron binding site 4 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe601 b:177.8 occ:1.00 FE4 C:SF4601 0.0 177.8 1.0 SG C:CYS112 2.3 144.2 1.0 S2 C:SF4601 2.3 175.6 1.0 S1 C:SF4601 2.3 183.5 1.0 S3 C:SF4601 2.3 179.4 1.0 FE1 C:SF4601 2.7 182.9 1.0 FE2 C:SF4601 2.7 176.3 1.0 FE3 C:SF4601 2.7 183.2 1.0 CB C:CYS112 2.9 131.6 1.0 OG C:SER126 3.2 134.4 1.0 S4 C:SF4601 3.9 170.3 1.0 CA C:CYS112 4.1 131.6 1.0 CG C:GLN125 4.2 129.8 1.0 NE2 C:GLN125 4.5 131.3 1.0 SG C:CYS99 4.6 144.9 1.0 CB C:SER126 4.6 130.3 1.0 CB C:CYS109 4.6 142.6 1.0 CD C:GLN125 4.7 128.7 1.0 SG C:CYS109 4.7 155.9 1.0 CD1 C:ILE108 4.9 146.0 1.0 N C:CYS112 4.9 131.8 1.0

N.Abbassi, M.Jaciuk, T.-Y.Lin, S.Glatt. Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine To Be Published.