Iron in PDB 8rhp: Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)

All present enzymatic activity of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii):
1.18.6.1;

The structure of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) also contains other interesting chemical elements:

Molybdenum	(Mo)	4 atoms
Calcium	(Ca)	4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 72;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) (pdb code 8rhp). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 72 binding sites of Iron where determined in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii), PDB code: 8rhp:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 72 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:95.9 occ:1.00 FE1 A:CLF501 0.0 95.9 1.0 S3A A:CLF501 2.3 71.8 1.0 S2A A:CLF501 2.3 43.9 1.0 SG A:CYS154 2.4 123.1 1.0 S1 A:CLF501 2.4 56.5 1.0 FE2 A:CLF501 2.5 39.0 1.0 FE4 A:CLF501 2.5 62.3 1.0 FE3 A:CLF501 2.8 37.1 1.0 CB A:CYS154 3.8 97.1 1.0 S4A A:CLF501 3.8 53.7 1.0 N A:CYS154 3.9 96.5 1.0 CA A:GLY185 4.2 101.0 1.0 SG B:CYS95 4.2 97.4 1.0 SG A:CYS88 4.2 111.8 1.0 N A:GLY185 4.3 103.2 1.0 CA A:CYS154 4.4 98.4 1.0 FE8 A:CLF501 4.4 39.5 1.0 FE5 A:CLF501 4.5 35.1 1.0 FE6 A:CLF501 4.8 44.4 1.0 SG B:CYS153 4.8 138.2 1.0 SG A:CYS62 5.0 114.9 1.0 C A:GLU153 5.0 98.2 1.0

Iron binding site 2 out of 72 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:39.0 occ:1.00 FE2 A:CLF501 0.0 39.0 1.0 S4A A:CLF501 2.3 53.7 1.0 S2A A:CLF501 2.3 43.9 1.0 SG B:CYS95 2.4 97.4 1.0 FE1 A:CLF501 2.5 95.9 1.0 S1 A:CLF501 2.5 56.5 1.0 FE4 A:CLF501 2.6 62.3 1.0 FE3 A:CLF501 2.7 37.1 1.0 FE8 A:CLF501 2.9 39.5 1.0 N B:CYS95 3.4 108.3 1.0 CA B:CYS95 3.6 107.1 1.0 CB B:CYS95 3.6 107.1 1.0 FE5 A:CLF501 3.7 35.1 1.0 S3A A:CLF501 3.8 71.8 1.0 S4B A:CLF501 3.9 65.2 1.0 C B:GLY94 4.1 120.6 1.0 SG A:CYS88 4.5 111.8 1.0 SG A:CYS154 4.5 123.1 1.0 FE6 A:CLF501 4.6 44.4 1.0 SG A:CYS62 4.6 114.9 1.0 CA B:GLY94 4.7 119.2 1.0 O B:GLY94 4.7 121.1 1.0 CB B:SER92 4.9 108.0 1.0

Iron binding site 3 out of 72 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:37.1 occ:1.00 FE3 A:CLF501 0.0 37.1 1.0 S4A A:CLF501 2.3 53.7 1.0 S2A A:CLF501 2.3 43.9 1.0 SG A:CYS62 2.4 114.9 1.0 S3A A:CLF501 2.4 71.8 1.0 FE4 A:CLF501 2.7 62.3 1.0 FE2 A:CLF501 2.7 39.0 1.0 FE1 A:CLF501 2.8 95.9 1.0 CB A:CYS62 3.5 104.6 1.0 CB A:TYR64 3.8 80.8 1.0 CA A:GLY185 4.2 101.0 1.0 S1 A:CLF501 4.2 56.5 1.0 CD2 A:TYR64 4.4 85.9 1.0 CG A:TYR64 4.4 84.0 1.0 N A:GLY185 4.7 103.2 1.0 CA B:GLY94 4.8 119.2 1.0 CB A:CYS88 4.8 88.2 1.0 SG A:CYS154 4.8 123.1 1.0 C B:GLY94 4.8 120.6 1.0 N B:CYS95 4.9 108.3 1.0 SG A:CYS88 4.9 111.8 1.0 N A:TYR64 4.9 89.6 1.0 CA A:TYR64 4.9 83.5 1.0 SG B:CYS95 5.0 97.4 1.0

Iron binding site 4 out of 72 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:62.3 occ:1.00 FE4 A:CLF501 0.0 62.3 1.0 S3A A:CLF501 2.2 71.8 1.0 S4A A:CLF501 2.3 53.7 1.0 SG A:CYS88 2.3 111.8 1.0 S1 A:CLF501 2.4 56.5 1.0 FE1 A:CLF501 2.5 95.9 1.0 FE2 A:CLF501 2.6 39.0 1.0 FE3 A:CLF501 2.7 37.1 1.0 CB A:CYS88 2.7 88.2 1.0 FE5 A:CLF501 2.9 35.1 1.0 CA A:CYS88 3.7 77.7 1.0 S2A A:CLF501 3.8 43.9 1.0 FE8 A:CLF501 4.0 39.5 1.0 S4B A:CLF501 4.3 65.2 1.0 N A:CYS88 4.4 72.7 1.0 FE6 A:CLF501 4.5 44.4 1.0 CG A:GLU153 4.7 91.8 1.0 CB A:GLU153 4.7 83.3 1.0 SG B:CYS95 4.7 97.4 1.0 SG A:CYS154 4.8 123.1 1.0 CD2 A:TYR64 4.8 85.9 1.0 SG A:CYS62 4.9 114.9 1.0 CD A:GLU153 4.9 103.3 1.0 C A:CYS88 5.0 79.5 1.0

Iron binding site 5 out of 72 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:35.1 occ:1.00 FE5 A:CLF501 0.0 35.1 1.0 S4B A:CLF501 2.3 65.2 1.0 SG A:CYS88 2.3 111.8 1.0 S2B A:CLF501 2.3 53.9 1.0 S1 A:CLF501 2.4 56.5 1.0 FE8 A:CLF501 2.5 39.5 1.0 FE6 A:CLF501 2.6 44.4 1.0 FE7 A:CLF501 2.8 40.2 1.0 FE4 A:CLF501 2.9 62.3 1.0 N A:CYS88 3.0 72.7 1.0 CB A:CYS88 3.4 88.2 1.0 CA A:CYS88 3.5 77.7 1.0 FE2 A:CLF501 3.7 39.0 1.0 C A:GLY87 3.8 95.6 1.0 S3B A:CLF501 3.8 56.9 1.0 S4A A:CLF501 3.9 53.7 1.0 CA A:GLY87 4.1 101.3 1.0 FE1 A:CLF501 4.5 95.9 1.0 SG B:CYS95 4.6 97.4 1.0 N A:GLY87 4.6 92.2 1.0 SG B:CYS153 4.6 138.2 1.0 O A:GLY87 4.6 104.7 1.0 SG B:CYS70 4.8 124.6 1.0 C A:CYS88 5.0 79.5 1.0

Iron binding site 6 out of 72 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:44.4 occ:1.00 FE6 A:CLF501 0.0 44.4 1.0 S2B A:CLF501 2.3 53.9 1.0 SG B:CYS153 2.3 138.2 1.0 S3B A:CLF501 2.4 56.9 1.0 S1 A:CLF501 2.5 56.5 1.0 FE5 A:CLF501 2.6 35.1 1.0 FE8 A:CLF501 2.6 39.5 1.0 FE7 A:CLF501 2.8 40.2 1.0 OG B:SER188 3.1 122.1 1.0 CB B:SER188 3.6 120.9 1.0 CB B:CYS153 3.7 133.1 1.0 S4B A:CLF501 3.8 65.2 1.0 N B:CYS153 3.9 132.2 1.0 SG A:CYS88 4.0 111.8 1.0 CA B:CYS153 4.4 131.6 1.0 FE4 A:CLF501 4.5 62.3 1.0 SG B:CYS95 4.6 97.4 1.0 FE2 A:CLF501 4.6 39.0 1.0 CG A:PRO85 4.7 83.4 1.0 CB A:PRO85 4.7 82.6 1.0 FE1 A:CLF501 4.8 95.9 1.0 CB B:THR152 4.8 113.9 1.0 C B:THR152 4.9 120.7 1.0

Iron binding site 7 out of 72 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:40.2 occ:1.00 FE7 A:CLF501 0.0 40.2 1.0 SG B:CYS70 2.3 124.6 1.0 S3B A:CLF501 2.3 56.9 1.0 S2B A:CLF501 2.4 53.9 1.0 S4B A:CLF501 2.4 65.2 1.0 FE8 A:CLF501 2.7 39.5 1.0 FE5 A:CLF501 2.8 35.1 1.0 FE6 A:CLF501 2.8 44.4 1.0 CB B:CYS70 3.1 114.5 1.0 CB B:SER188 3.8 120.9 1.0 CG B:PRO72 4.0 103.5 1.0 CA A:GLY87 4.0 101.3 1.0 CE1 B:PHE99 4.2 105.1 1.0 CZ B:PHE99 4.2 104.9 1.0 OG B:SER188 4.2 122.1 1.0 CE2 A:TYR91 4.3 66.3 1.0 S1 A:CLF501 4.4 56.5 1.0 C A:GLY87 4.5 95.6 1.0 CA B:CYS70 4.6 112.4 1.0 N A:CYS88 4.6 72.7 1.0 CD B:PRO72 4.6 104.5 1.0 N A:GLY87 4.7 92.2 1.0 OH A:TYR91 4.8 86.7 1.0 SG A:CYS88 5.0 111.8 1.0 CZ A:TYR91 5.0 75.0 1.0

Iron binding site 8 out of 72 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:39.5 occ:1.00 FE8 A:CLF501 0.0 39.5 1.0 S4B A:CLF501 2.2 65.2 1.0 S3B A:CLF501 2.4 56.9 1.0 SG B:CYS95 2.4 97.4 1.0 FE5 A:CLF501 2.5 35.1 1.0 S1 A:CLF501 2.5 56.5 1.0 FE6 A:CLF501 2.6 44.4 1.0 FE7 A:CLF501 2.7 40.2 1.0 FE2 A:CLF501 2.9 39.0 1.0 CB B:CYS95 3.3 107.1 1.0 S2B A:CLF501 3.8 53.9 1.0 CA B:CYS95 4.0 107.1 1.0 FE4 A:CLF501 4.0 62.3 1.0 S4A A:CLF501 4.2 53.7 1.0 SG B:CYS153 4.3 138.2 1.0 CZ B:PHE99 4.3 104.9 1.0 CB B:THR152 4.4 113.9 1.0 FE1 A:CLF501 4.4 95.9 1.0 SG A:CYS88 4.5 111.8 1.0 CG2 B:THR152 4.6 113.0 1.0 N B:CYS95 4.7 108.3 1.0 CE1 B:PHE99 4.7 105.1 1.0 SG B:CYS70 4.8 124.6 1.0

Iron binding site 9 out of 72 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe503 b:122.9 occ:1.00 FE1 A:ICS503 0.0 122.9 1.0 S2A A:ICS503 2.3 116.8 1.0 S4A A:ICS503 2.3 106.9 1.0 S1A A:ICS503 2.3 131.4 1.0 SG A:CYS275 2.3 116.9 1.0 FE4 A:ICS503 2.6 129.2 1.0 FE3 A:ICS503 2.6 126.5 1.0 FE2 A:ICS503 2.6 121.8 1.0 CX A:ICS503 3.4 121.1 1.0 CB A:CYS275 3.5 108.9 1.0 CB A:LEU358 4.3 104.7 1.0 OG A:SER278 4.3 115.1 1.0 CB A:SER278 4.5 109.0 1.0 CE2 A:TYR229 4.5 99.6 1.0 CD2 A:LEU358 4.7 108.1 1.0 S3A A:ICS503 4.7 129.8 1.0 S5A A:ICS503 4.7 125.0 1.0 CA A:CYS275 4.8 108.5 1.0 S2B A:ICS503 4.8 104.7 1.0 CD2 A:TYR229 4.8 94.2 1.0 FE7 A:ICS503 4.9 130.2 1.0 FE6 A:ICS503 4.9 107.8 1.0 FE5 A:ICS503 5.0 130.3 1.0

Iron binding site 10 out of 72 in the Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe503 b:121.8 occ:1.00 FE2 A:ICS503 0.0 121.8 1.0 CX A:ICS503 2.0 121.1 1.0 S2B A:ICS503 2.2 104.7 1.0 S2A A:ICS503 2.2 116.8 1.0 S1A A:ICS503 2.2 131.4 1.0 FE6 A:ICS503 2.6 107.8 1.0 FE1 A:ICS503 2.6 122.9 1.0 FE4 A:ICS503 2.7 129.2 1.0 FE3 A:ICS503 2.7 126.5 1.0 FE7 A:ICS503 3.7 130.2 1.0 FE5 A:ICS503 3.7 130.3 1.0 S4A A:ICS503 3.9 106.9 1.0 NE2 A:HIS195 3.9 103.6 1.0 CZ A:PHE381 4.2 125.3 1.0 S3B A:ICS503 4.2 125.1 1.0 S1B A:ICS503 4.3 129.0 1.0 CG1 A:VAL70 4.4 90.1 1.0 CE1 A:HIS195 4.4 104.5 1.0 S3A A:ICS503 4.5 129.8 1.0 S5A A:ICS503 4.5 125.0 1.0 CE1 A:PHE381 4.5 125.0 1.0 SG A:CYS275 4.6 116.9 1.0 CG2 A:VAL70 4.8 94.7 1.0 CD2 A:HIS195 5.0 100.8 1.0

P.Franke, L.Zhang, O.Einsle. Cryo-Em Structure of the Molybdenum Nitrogenase Complexed with Iron Protein (Nifh) and Shethna Protein II (Fesii) To Be Published.