Iron in PDB 8yio: Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State
Enzymatic activity of Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State
All present enzymatic activity of Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State:
7.1.1.8;
Iron Binding Sites:
The binding sites of Iron atom in the Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State
(pdb code 8yio). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the
Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State, PDB code: 8yio:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
Iron binding site 1 out
of 6 in 8yio
Go back to
Iron Binding Sites List in 8yio
Iron binding site 1 out
of 6 in the Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe405
b:16.3
occ:1.00
|
FE
|
C:HEM405
|
0.0
|
16.3
|
1.0
|
|
ND
|
C:HEM405
|
2.0
|
16.3
|
1.0
|
|
NA
|
C:HEM405
|
2.1
|
16.3
|
1.0
|
|
NC
|
C:HEM405
|
2.1
|
16.3
|
1.0
|
|
NB
|
C:HEM405
|
2.1
|
16.3
|
1.0
|
|
CE1
|
C:HIS183
|
2.6
|
16.3
|
1.0
|
|
NE2
|
C:HIS82
|
2.7
|
16.3
|
1.0
|
|
C1D
|
C:HEM405
|
3.1
|
16.3
|
1.0
|
|
C4D
|
C:HEM405
|
3.1
|
16.3
|
1.0
|
|
C1A
|
C:HEM405
|
3.1
|
16.3
|
1.0
|
|
C4C
|
C:HEM405
|
3.1
|
16.3
|
1.0
|
|
C4A
|
C:HEM405
|
3.1
|
16.3
|
1.0
|
|
C4B
|
C:HEM405
|
3.1
|
16.3
|
1.0
|
|
C1C
|
C:HEM405
|
3.1
|
16.3
|
1.0
|
|
C1B
|
C:HEM405
|
3.1
|
16.3
|
1.0
|
|
CD2
|
C:HIS82
|
3.4
|
16.3
|
1.0
|
|
CHA
|
C:HEM405
|
3.4
|
16.3
|
1.0
|
|
CHD
|
C:HEM405
|
3.4
|
16.3
|
1.0
|
|
CHC
|
C:HEM405
|
3.4
|
16.3
|
1.0
|
|
CHB
|
C:HEM405
|
3.4
|
16.3
|
1.0
|
|
NE2
|
C:HIS183
|
3.5
|
16.3
|
1.0
|
|
ND1
|
C:HIS183
|
3.6
|
16.3
|
1.0
|
|
CE1
|
C:HIS82
|
3.7
|
16.3
|
1.0
|
|
C2D
|
C:HEM405
|
4.3
|
16.3
|
1.0
|
|
C3D
|
C:HEM405
|
4.3
|
16.3
|
1.0
|
|
C3A
|
C:HEM405
|
4.3
|
16.3
|
1.0
|
|
C2A
|
C:HEM405
|
4.3
|
16.3
|
1.0
|
|
C3C
|
C:HEM405
|
4.3
|
16.3
|
1.0
|
|
C2C
|
C:HEM405
|
4.3
|
16.3
|
1.0
|
|
C3B
|
C:HEM405
|
4.3
|
16.3
|
1.0
|
|
C2B
|
C:HEM405
|
4.3
|
16.3
|
1.0
|
|
CG
|
C:HIS82
|
4.7
|
16.3
|
1.0
|
|
CD2
|
C:HIS183
|
4.7
|
16.3
|
1.0
|
|
CG
|
C:HIS183
|
4.7
|
16.3
|
1.0
|
|
ND1
|
C:HIS82
|
4.8
|
16.3
|
1.0
|
|
CA
|
C:GLY131
|
4.9
|
16.3
|
1.0
|
|
Iron binding site 2 out
of 6 in 8yio
Go back to
Iron Binding Sites List in 8yio
Iron binding site 2 out
of 6 in the Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe408
b:16.3
occ:1.00
|
FE
|
C:HEM408
|
0.0
|
16.3
|
1.0
|
|
NB
|
C:HEM408
|
2.1
|
16.3
|
1.0
|
|
NA
|
C:HEM408
|
2.1
|
16.3
|
1.0
|
|
NC
|
C:HEM408
|
2.1
|
16.3
|
1.0
|
|
ND
|
C:HEM408
|
2.1
|
16.3
|
1.0
|
|
NE2
|
C:HIS197
|
2.7
|
7.3
|
1.0
|
|
NE2
|
C:HIS96
|
2.7
|
16.3
|
1.0
|
|
C4A
|
C:HEM408
|
3.0
|
16.3
|
1.0
|
|
C1B
|
C:HEM408
|
3.1
|
16.3
|
1.0
|
|
C4C
|
C:HEM408
|
3.1
|
16.3
|
1.0
|
|
C1C
|
C:HEM408
|
3.1
|
16.3
|
1.0
|
|
C4B
|
C:HEM408
|
3.1
|
16.3
|
1.0
|
|
C1D
|
C:HEM408
|
3.1
|
16.3
|
1.0
|
|
C1A
|
C:HEM408
|
3.1
|
16.3
|
1.0
|
|
C4D
|
C:HEM408
|
3.1
|
16.3
|
1.0
|
|
CD2
|
C:HIS96
|
3.3
|
16.3
|
1.0
|
|
CHB
|
C:HEM408
|
3.4
|
16.3
|
1.0
|
|
CHD
|
C:HEM408
|
3.4
|
16.3
|
1.0
|
|
CD2
|
C:HIS197
|
3.4
|
7.3
|
1.0
|
|
CHC
|
C:HEM408
|
3.4
|
16.3
|
1.0
|
|
CHA
|
C:HEM408
|
3.5
|
16.3
|
1.0
|
|
CE1
|
C:HIS197
|
3.8
|
7.3
|
1.0
|
|
CE1
|
C:HIS96
|
3.9
|
16.3
|
1.0
|
|
C3A
|
C:HEM408
|
4.3
|
16.3
|
1.0
|
|
C2C
|
C:HEM408
|
4.3
|
16.3
|
1.0
|
|
C3C
|
C:HEM408
|
4.3
|
16.3
|
1.0
|
|
C2B
|
C:HEM408
|
4.3
|
16.3
|
1.0
|
|
C2A
|
C:HEM408
|
4.3
|
16.3
|
1.0
|
|
C3B
|
C:HEM408
|
4.3
|
16.3
|
1.0
|
|
C2D
|
C:HEM408
|
4.3
|
16.3
|
1.0
|
|
C3D
|
C:HEM408
|
4.3
|
16.3
|
1.0
|
|
CG
|
C:HIS96
|
4.6
|
16.3
|
1.0
|
|
CG
|
C:HIS197
|
4.6
|
7.3
|
1.0
|
|
ND1
|
C:HIS197
|
4.7
|
7.3
|
1.0
|
|
ND1
|
C:HIS96
|
4.9
|
16.3
|
1.0
|
|
Iron binding site 3 out
of 6 in 8yio
Go back to
Iron Binding Sites List in 8yio
Iron binding site 3 out
of 6 in the Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe401
b:21.1
occ:1.00
|
FE
|
D:HEM401
|
0.0
|
21.1
|
1.0
|
|
NB
|
D:HEM401
|
2.0
|
21.1
|
1.0
|
|
NC
|
D:HEM401
|
2.0
|
21.1
|
1.0
|
|
ND
|
D:HEM401
|
2.0
|
21.1
|
1.0
|
|
NA
|
D:HEM401
|
2.1
|
21.1
|
1.0
|
|
NE2
|
D:HIS105
|
2.7
|
15.9
|
1.0
|
|
C4B
|
D:HEM401
|
3.0
|
21.1
|
1.0
|
|
C1C
|
D:HEM401
|
3.0
|
21.1
|
1.0
|
|
C1B
|
D:HEM401
|
3.0
|
21.1
|
1.0
|
|
C4C
|
D:HEM401
|
3.1
|
21.1
|
1.0
|
|
C4D
|
D:HEM401
|
3.1
|
21.1
|
1.0
|
|
C1D
|
D:HEM401
|
3.1
|
21.1
|
1.0
|
|
C1A
|
D:HEM401
|
3.1
|
21.1
|
1.0
|
|
SD
|
D:MET225
|
3.1
|
27.5
|
1.0
|
|
C4A
|
D:HEM401
|
3.1
|
21.1
|
1.0
|
|
CE
|
D:MET225
|
3.2
|
27.5
|
1.0
|
|
CHC
|
D:HEM401
|
3.4
|
21.1
|
1.0
|
|
CD2
|
D:HIS105
|
3.4
|
15.9
|
1.0
|
|
CHA
|
D:HEM401
|
3.4
|
21.1
|
1.0
|
|
CHD
|
D:HEM401
|
3.4
|
21.1
|
1.0
|
|
CHB
|
D:HEM401
|
3.5
|
21.1
|
1.0
|
|
CE1
|
D:HIS105
|
3.8
|
15.9
|
1.0
|
|
C3B
|
D:HEM401
|
4.2
|
21.1
|
1.0
|
|
C2B
|
D:HEM401
|
4.2
|
21.1
|
1.0
|
|
C2C
|
D:HEM401
|
4.3
|
21.1
|
1.0
|
|
C3C
|
D:HEM401
|
4.3
|
21.1
|
1.0
|
|
C2D
|
D:HEM401
|
4.3
|
21.1
|
1.0
|
|
C3D
|
D:HEM401
|
4.3
|
21.1
|
1.0
|
|
C2A
|
D:HEM401
|
4.3
|
21.1
|
1.0
|
|
CG
|
D:MET225
|
4.3
|
27.5
|
1.0
|
|
CB
|
D:MET225
|
4.3
|
27.5
|
1.0
|
|
C3A
|
D:HEM401
|
4.3
|
21.1
|
1.0
|
|
CG
|
D:HIS105
|
4.7
|
15.9
|
1.0
|
|
ND1
|
D:HIS105
|
4.8
|
15.9
|
1.0
|
|
Iron binding site 4 out
of 6 in 8yio
Go back to
Iron Binding Sites List in 8yio
Iron binding site 4 out
of 6 in the Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe405
b:16.3
occ:1.00
|
FE
|
N:HEM405
|
0.0
|
16.3
|
1.0
|
|
ND
|
N:HEM405
|
2.0
|
16.3
|
1.0
|
|
NA
|
N:HEM405
|
2.1
|
16.3
|
1.0
|
|
NC
|
N:HEM405
|
2.1
|
16.3
|
1.0
|
|
NB
|
N:HEM405
|
2.1
|
16.3
|
1.0
|
|
CE1
|
N:HIS183
|
2.6
|
12.7
|
1.0
|
|
NE2
|
N:HIS82
|
2.7
|
16.3
|
1.0
|
|
C1D
|
N:HEM405
|
3.1
|
16.3
|
1.0
|
|
C4D
|
N:HEM405
|
3.1
|
16.3
|
1.0
|
|
C1A
|
N:HEM405
|
3.1
|
16.3
|
1.0
|
|
C4A
|
N:HEM405
|
3.1
|
16.3
|
1.0
|
|
C4C
|
N:HEM405
|
3.1
|
16.3
|
1.0
|
|
C4B
|
N:HEM405
|
3.1
|
16.3
|
1.0
|
|
C1C
|
N:HEM405
|
3.1
|
16.3
|
1.0
|
|
C1B
|
N:HEM405
|
3.1
|
16.3
|
1.0
|
|
CD2
|
N:HIS82
|
3.4
|
16.3
|
1.0
|
|
CHA
|
N:HEM405
|
3.4
|
16.3
|
1.0
|
|
CHD
|
N:HEM405
|
3.4
|
16.3
|
1.0
|
|
CHC
|
N:HEM405
|
3.4
|
16.3
|
1.0
|
|
CHB
|
N:HEM405
|
3.4
|
16.3
|
1.0
|
|
NE2
|
N:HIS183
|
3.5
|
12.7
|
1.0
|
|
ND1
|
N:HIS183
|
3.6
|
12.7
|
1.0
|
|
CE1
|
N:HIS82
|
3.7
|
16.3
|
1.0
|
|
C2D
|
N:HEM405
|
4.3
|
16.3
|
1.0
|
|
C3D
|
N:HEM405
|
4.3
|
16.3
|
1.0
|
|
C3A
|
N:HEM405
|
4.3
|
16.3
|
1.0
|
|
C2A
|
N:HEM405
|
4.3
|
16.3
|
1.0
|
|
C3C
|
N:HEM405
|
4.3
|
16.3
|
1.0
|
|
C2C
|
N:HEM405
|
4.3
|
16.3
|
1.0
|
|
C3B
|
N:HEM405
|
4.3
|
16.3
|
1.0
|
|
C2B
|
N:HEM405
|
4.3
|
16.3
|
1.0
|
|
CG
|
N:HIS82
|
4.7
|
16.3
|
1.0
|
|
CD2
|
N:HIS183
|
4.7
|
12.7
|
1.0
|
|
CG
|
N:HIS183
|
4.7
|
12.7
|
1.0
|
|
ND1
|
N:HIS82
|
4.8
|
16.3
|
1.0
|
|
CA
|
N:GLY131
|
4.9
|
16.3
|
1.0
|
|
Iron binding site 5 out
of 6 in 8yio
Go back to
Iron Binding Sites List in 8yio
Iron binding site 5 out
of 6 in the Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe406
b:16.3
occ:1.00
|
FE
|
N:HEM406
|
0.0
|
16.3
|
1.0
|
|
NB
|
N:HEM406
|
2.1
|
16.3
|
1.0
|
|
NA
|
N:HEM406
|
2.1
|
16.3
|
1.0
|
|
NC
|
N:HEM406
|
2.1
|
16.3
|
1.0
|
|
ND
|
N:HEM406
|
2.1
|
16.3
|
1.0
|
|
NE2
|
N:HIS197
|
2.7
|
7.7
|
1.0
|
|
NE2
|
N:HIS96
|
2.7
|
16.3
|
1.0
|
|
C4A
|
N:HEM406
|
3.0
|
16.3
|
1.0
|
|
C1B
|
N:HEM406
|
3.1
|
16.3
|
1.0
|
|
C4C
|
N:HEM406
|
3.1
|
16.3
|
1.0
|
|
C1C
|
N:HEM406
|
3.1
|
16.3
|
1.0
|
|
C4B
|
N:HEM406
|
3.1
|
16.3
|
1.0
|
|
C1A
|
N:HEM406
|
3.1
|
16.3
|
1.0
|
|
C1D
|
N:HEM406
|
3.1
|
16.3
|
1.0
|
|
C4D
|
N:HEM406
|
3.1
|
16.3
|
1.0
|
|
CD2
|
N:HIS96
|
3.3
|
16.3
|
1.0
|
|
CHB
|
N:HEM406
|
3.4
|
16.3
|
1.0
|
|
CD2
|
N:HIS197
|
3.4
|
7.7
|
1.0
|
|
CHD
|
N:HEM406
|
3.4
|
16.3
|
1.0
|
|
CHC
|
N:HEM406
|
3.4
|
16.3
|
1.0
|
|
CHA
|
N:HEM406
|
3.5
|
16.3
|
1.0
|
|
CE1
|
N:HIS197
|
3.8
|
7.7
|
1.0
|
|
CE1
|
N:HIS96
|
3.9
|
16.3
|
1.0
|
|
C3A
|
N:HEM406
|
4.3
|
16.3
|
1.0
|
|
C2C
|
N:HEM406
|
4.3
|
16.3
|
1.0
|
|
C3C
|
N:HEM406
|
4.3
|
16.3
|
1.0
|
|
C2A
|
N:HEM406
|
4.3
|
16.3
|
1.0
|
|
C2B
|
N:HEM406
|
4.3
|
16.3
|
1.0
|
|
C3B
|
N:HEM406
|
4.3
|
16.3
|
1.0
|
|
C2D
|
N:HEM406
|
4.3
|
16.3
|
1.0
|
|
C3D
|
N:HEM406
|
4.3
|
16.3
|
1.0
|
|
CG
|
N:HIS96
|
4.6
|
16.3
|
1.0
|
|
CG
|
N:HIS197
|
4.6
|
7.7
|
1.0
|
|
ND1
|
N:HIS197
|
4.7
|
7.7
|
1.0
|
|
ND1
|
N:HIS96
|
4.9
|
16.3
|
1.0
|
|
Iron binding site 6 out
of 6 in 8yio
Go back to
Iron Binding Sites List in 8yio
Iron binding site 6 out
of 6 in the Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Fe402
b:20.6
occ:1.00
|
FE
|
O:HEM402
|
0.0
|
20.6
|
1.0
|
|
NB
|
O:HEM402
|
2.0
|
20.6
|
1.0
|
|
NC
|
O:HEM402
|
2.0
|
20.6
|
1.0
|
|
ND
|
O:HEM402
|
2.0
|
20.6
|
1.0
|
|
NA
|
O:HEM402
|
2.1
|
20.6
|
1.0
|
|
NE2
|
O:HIS105
|
2.7
|
16.0
|
1.0
|
|
C4B
|
O:HEM402
|
3.0
|
20.6
|
1.0
|
|
C1C
|
O:HEM402
|
3.0
|
20.6
|
1.0
|
|
C1B
|
O:HEM402
|
3.0
|
20.6
|
1.0
|
|
C4D
|
O:HEM402
|
3.1
|
20.6
|
1.0
|
|
C4C
|
O:HEM402
|
3.1
|
20.6
|
1.0
|
|
C1D
|
O:HEM402
|
3.1
|
20.6
|
1.0
|
|
C1A
|
O:HEM402
|
3.1
|
20.6
|
1.0
|
|
SD
|
O:MET225
|
3.1
|
26.9
|
1.0
|
|
C4A
|
O:HEM402
|
3.1
|
20.6
|
1.0
|
|
CE
|
O:MET225
|
3.2
|
26.9
|
1.0
|
|
CHC
|
O:HEM402
|
3.4
|
20.6
|
1.0
|
|
CD2
|
O:HIS105
|
3.4
|
16.0
|
1.0
|
|
CHA
|
O:HEM402
|
3.4
|
20.6
|
1.0
|
|
CHD
|
O:HEM402
|
3.4
|
20.6
|
1.0
|
|
CHB
|
O:HEM402
|
3.5
|
20.6
|
1.0
|
|
CE1
|
O:HIS105
|
3.8
|
16.0
|
1.0
|
|
C3B
|
O:HEM402
|
4.2
|
20.6
|
1.0
|
|
C2B
|
O:HEM402
|
4.2
|
20.6
|
1.0
|
|
C2C
|
O:HEM402
|
4.3
|
20.6
|
1.0
|
|
C3C
|
O:HEM402
|
4.3
|
20.6
|
1.0
|
|
C2D
|
O:HEM402
|
4.3
|
20.6
|
1.0
|
|
C3D
|
O:HEM402
|
4.3
|
20.6
|
1.0
|
|
C2A
|
O:HEM402
|
4.3
|
20.6
|
1.0
|
|
CG
|
O:MET225
|
4.3
|
26.9
|
1.0
|
|
CB
|
O:MET225
|
4.3
|
26.9
|
1.0
|
|
C3A
|
O:HEM402
|
4.3
|
20.6
|
1.0
|
|
CG
|
O:HIS105
|
4.7
|
16.0
|
1.0
|
|
ND1
|
O:HIS105
|
4.8
|
16.0
|
1.0
|
|
Reference:
Y.Ye,
Z.W.Li,
G.F.Yang.
Cryo-Em Structure of Saccharomyces Cerevisiae BC1 Complex in Azoxystrobin-Bound State To Be Published.
Page generated: Fri Aug 8 01:42:51 2025
|
