Iron in PDB 8rkp: Cytochrome C Prime From Hydrogenophilus Thermoluteolus: Ferrous Recombinant Native with Bound No

The structure of Cytochrome C Prime From Hydrogenophilus Thermoluteolus: Ferrous Recombinant Native with Bound No, PDB code: 8rkp was solved by S.Fujii, M.A.Hough, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	72.57 / 1.63
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	83.671, 83.671, 88.247, 90, 90, 120
R / Rfree (%)	19.7 / 21.9

The binding sites of Iron atom in the Cytochrome C Prime From Hydrogenophilus Thermoluteolus: Ferrous Recombinant Native with Bound No (pdb code 8rkp). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Cytochrome C Prime From Hydrogenophilus Thermoluteolus: Ferrous Recombinant Native with Bound No, PDB code: 8rkp:

Iron binding site 1 out of 1 in the Cytochrome C Prime From Hydrogenophilus Thermoluteolus: Ferrous Recombinant Native with Bound No


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cytochrome C Prime From Hydrogenophilus Thermoluteolus: Ferrous Recombinant Native with Bound No within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe205 b:25.0 occ:1.00 FE A:HEC205 0.0 25.0 1.0 N A:NO201 1.9 30.9 1.0 NB A:HEC205 2.0 25.3 1.0 ND A:HEC205 2.0 25.8 1.0 NC A:HEC205 2.1 27.5 1.0 NA A:HEC205 2.1 23.3 1.0 O A:NO201 2.7 34.5 1.0 C4B A:HEC205 3.0 24.8 1.0 C1B A:HEC205 3.0 26.6 1.0 C4D A:HEC205 3.1 24.0 1.0 C1C A:HEC205 3.1 28.1 1.0 C1D A:HEC205 3.1 28.5 1.0 C4A A:HEC205 3.1 25.7 1.0 C4C A:HEC205 3.1 28.1 1.0 C1A A:HEC205 3.1 23.4 1.0 CD1 A:TYR16 3.4 23.5 1.0 CHC A:HEC205 3.4 24.8 1.0 CHB A:HEC205 3.4 23.7 1.0 CHA A:HEC205 3.4 23.4 1.0 CHD A:HEC205 3.5 26.0 1.0 CG A:TYR16 3.6 23.3 1.0 CE1 A:TYR16 3.7 25.6 1.0 CD2 A:TYR16 4.0 26.0 1.0 CZ A:TYR16 4.1 25.3 1.0 CB A:TYR16 4.1 23.1 1.0 CE2 A:TYR16 4.3 24.5 1.0 NH1 A:ARG132 4.3 31.9 1.0 C3B A:HEC205 4.3 24.9 1.0 C3D A:HEC205 4.3 28.0 1.0 C2B A:HEC205 4.4 27.2 1.0 C2D A:HEC205 4.4 25.0 1.0 C3A A:HEC205 4.4 23.0 1.0 C2C A:HEC205 4.4 30.1 1.0 C2A A:HEC205 4.4 24.1 1.0 C3C A:HEC205 4.4 30.3 1.0 CD A:ARG132 4.9 31.2 1.0 OH A:TYR16 5.0 28.6 1.0

S.Fujii, M.T.Wilson, H.R.Adams, H.Mikolajek, D.A.Svistunenko, P.Smyth, C.R.Andrew, Y.Sambongi, M.A.Hough. Conformational Rigidity of Cytochrome C'-Alpha From A Thermophile Is Associated with Slow No Binding. Biophys.J. V. 123 2594 2024.
ISSN: ESSN 1542-0086
PubMed: 38937973
DOI: 10.1016/J.BPJ.2024.06.026