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Iron in PDB 8z21: Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State

Enzymatic activity of Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State

All present enzymatic activity of Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State:
7.4.2.6;

Iron Binding Sites:

The binding sites of Iron atom in the Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State (pdb code 8z21). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State, PDB code: 8z21:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 8z21

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Iron binding site 1 out of 8 in the Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe401

b:71.3
occ:1.00
 FE1 C:SF4401 0.0 71.3 1.0
S3 C:SF4401 2.2 70.5 1.0
S2 C:SF4401 2.3 65.8 1.0
S4 C:SF4401 2.3 76.7 1.0
SG C:CYS312 2.4 84.8 1.0
FE2 C:SF4401 2.7 36.0 1.0
FE4 C:SF4401 2.7 51.1 1.0
FE3 C:SF4401 2.7 78.2 1.0
CB C:CYS312 3.4 73.0 1.0
S1 C:SF4401 3.8 68.0 1.0
CA C:CYS312 4.6 69.8 1.0
CB C:CYS299 4.7 59.2 1.0
SG C:CYS299 4.7 66.9 1.0
CA C:ALA308 4.8 60.5 1.0
SG C:CYS329 4.8 72.5 1.0
CD2 C:PHE330 4.8 55.2 1.0
N C:MET309 5.0 76.7 1.0
SG C:CYS305 5.0 91.9 1.0
O C:HIS307 5.0 55.8 1.0

Iron binding site 2 out of 8 in 8z21

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Iron binding site 2 out of 8 in the Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe401

b:36.0
occ:1.00
 FE2 C:SF4401 0.0 36.0 1.0
S4 C:SF4401 2.3 76.7 1.0
S3 C:SF4401 2.3 70.5 1.0
S1 C:SF4401 2.3 68.0 1.0
SG C:CYS299 2.4 66.9 1.0
FE3 C:SF4401 2.7 78.2 1.0
FE1 C:SF4401 2.7 71.3 1.0
FE4 C:SF4401 2.7 51.1 1.0
CB C:CYS299 3.2 59.2 1.0
S2 C:SF4401 3.8 65.8 1.0
CB C:PHE301 4.6 54.4 1.0
CA C:CYS299 4.7 53.3 1.0
SG C:CYS312 4.8 84.8 1.0
NE2 C:HIS262 4.8 50.2 1.0
SG C:CYS329 4.9 72.5 1.0
CB C:CYS312 4.9 73.0 1.0
SG C:CYS305 5.0 91.9 1.0
N C:GLN302 5.0 68.4 1.0

Iron binding site 3 out of 8 in 8z21

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Iron binding site 3 out of 8 in the Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe401

b:78.2
occ:1.00
 FE3 C:SF4401 0.0 78.2 1.0
S1 C:SF4401 2.2 68.0 1.0
S4 C:SF4401 2.3 76.7 1.0
S2 C:SF4401 2.3 65.8 1.0
SG C:CYS305 2.5 91.9 1.0
FE4 C:SF4401 2.7 51.1 1.0
FE2 C:SF4401 2.7 36.0 1.0
FE1 C:SF4401 2.7 71.3 1.0
CB C:CYS305 3.2 61.6 1.0
S3 C:SF4401 3.8 70.5 1.0
CA C:CYS305 4.6 57.1 1.0
CG C:PRO263 4.6 51.2 1.0
CD2 C:PHE301 4.6 56.0 1.0
N C:ALA308 4.7 56.8 1.0
CA C:ALA308 4.7 60.5 1.0
C C:HIS307 4.7 52.0 1.0
SG C:CYS299 4.9 66.9 1.0
SG C:CYS312 4.9 84.8 1.0
CB C:PRO263 4.9 48.4 1.0
SG C:CYS329 4.9 72.5 1.0
O C:HIS307 5.0 55.8 1.0

Iron binding site 4 out of 8 in 8z21

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Iron binding site 4 out of 8 in the Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe401

b:51.1
occ:1.00
 FE4 C:SF4401 0.0 51.1 1.0
S2 C:SF4401 2.2 65.8 1.0
S1 C:SF4401 2.3 68.0 1.0
S3 C:SF4401 2.3 70.5 1.0
SG C:CYS329 2.4 72.5 1.0
FE3 C:SF4401 2.7 78.2 1.0
FE1 C:SF4401 2.7 71.3 1.0
FE2 C:SF4401 2.7 36.0 1.0
CB C:CYS329 3.6 62.2 1.0
S4 C:SF4401 3.9 76.7 1.0
CA C:CYS329 4.1 61.9 1.0
N C:PHE330 4.1 49.4 1.0
CG C:PRO263 4.5 51.2 1.0
C C:CYS329 4.6 60.9 1.0
CD C:PRO263 4.6 54.1 1.0
N C:LYS331 4.7 56.0 1.0
SG C:CYS305 4.8 91.9 1.0
SG C:CYS299 4.9 66.9 1.0
NE2 C:HIS262 4.9 50.2 1.0
SG C:CYS312 5.0 84.8 1.0

Iron binding site 5 out of 8 in 8z21

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Iron binding site 5 out of 8 in the Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe401

b:66.2
occ:1.00
 FE1 D:SF4401 0.0 66.2 1.0
S3 D:SF4401 2.2 55.6 1.0
S2 D:SF4401 2.3 64.1 1.0
S4 D:SF4401 2.3 81.7 1.0
SG D:CYS311 2.5 92.4 1.0
FE2 D:SF4401 2.7 74.6 1.0
FE4 D:SF4401 2.7 59.9 1.0
FE3 D:SF4401 2.7 54.9 1.0
CB D:CYS311 3.4 79.2 1.0
S1 D:SF4401 3.8 64.5 1.0
CA D:CYS311 4.6 77.8 1.0
CD D:LYS330 4.7 72.9 1.0
SG D:CYS298 4.7 83.2 1.0
CG D:LYS330 4.7 75.1 1.0
CB D:CYS298 4.8 64.5 1.0
SG D:CYS328 4.8 85.4 1.0
CA D:ALA307 4.8 68.8 1.0
SG D:CYS304 4.9 96.2 1.0
N D:GLY308 5.0 85.0 1.0

Iron binding site 6 out of 8 in 8z21

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Iron binding site 6 out of 8 in the Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe401

b:74.6
occ:1.00
 FE2 D:SF4401 0.0 74.6 1.0
S3 D:SF4401 2.2 55.6 1.0
S1 D:SF4401 2.3 64.5 1.0
S4 D:SF4401 2.3 81.7 1.0
SG D:CYS328 2.5 85.4 1.0
FE1 D:SF4401 2.7 66.2 1.0
FE4 D:SF4401 2.7 59.9 1.0
FE3 D:SF4401 2.7 54.9 1.0
CB D:CYS328 3.6 62.0 1.0
S2 D:SF4401 3.8 64.1 1.0
CA D:CYS328 3.9 59.7 1.0
N D:LEU329 4.2 56.1 1.0
C D:CYS328 4.5 61.7 1.0
N D:LYS330 4.7 64.6 1.0
SG D:CYS304 4.8 96.2 1.0
CD D:PRO259 4.9 52.3 1.0
O D:SER327 4.9 57.3 1.0
SG D:CYS311 4.9 92.4 1.0
CG D:PRO259 5.0 53.7 1.0
SG D:CYS298 5.0 83.2 1.0

Iron binding site 7 out of 8 in 8z21

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Iron binding site 7 out of 8 in the Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe401

b:54.9
occ:1.00
 FE3 D:SF4401 0.0 54.9 1.0
S1 D:SF4401 2.2 64.5 1.0
S4 D:SF4401 2.3 81.7 1.0
S2 D:SF4401 2.3 64.1 1.0
SG D:CYS298 2.4 83.2 1.0
FE4 D:SF4401 2.7 59.9 1.0
FE2 D:SF4401 2.7 74.6 1.0
FE1 D:SF4401 2.7 66.2 1.0
CB D:CYS298 3.4 64.5 1.0
S3 D:SF4401 3.8 55.6 1.0
CB D:PHE300 4.6 56.2 1.0
SG D:CYS311 4.7 92.4 1.0
CB D:CYS311 4.8 79.2 1.0
CA D:CYS298 4.8 61.1 1.0
N D:ARG301 4.9 76.9 1.0
CG D:PRO316 4.9 64.2 1.0
SG D:CYS304 5.0 96.2 1.0

Iron binding site 8 out of 8 in 8z21

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Iron binding site 8 out of 8 in the Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe401

b:59.9
occ:1.00
 FE4 D:SF4401 0.0 59.9 1.0
S2 D:SF4401 2.2 64.1 1.0
S1 D:SF4401 2.3 64.5 1.0
S3 D:SF4401 2.3 55.6 1.0
SG D:CYS304 2.5 96.2 1.0
FE3 D:SF4401 2.7 54.9 1.0
FE2 D:SF4401 2.7 74.6 1.0
FE1 D:SF4401 2.7 66.2 1.0
CB D:CYS304 3.2 71.5 1.0
S4 D:SF4401 3.9 81.7 1.0
CA D:ALA307 4.6 68.8 1.0
CG D:PRO259 4.6 53.7 1.0
CA D:CYS304 4.7 62.0 1.0
N D:ALA307 4.7 70.7 1.0
CD2 D:PHE300 4.7 56.3 1.0
CG2 D:ILE306 4.8 63.2 1.0
C D:ILE306 4.8 65.2 1.0
SG D:CYS298 4.9 83.2 1.0
O D:ILE306 4.9 65.2 1.0
SG D:CYS328 5.0 85.4 1.0

Reference:

P.Li, Y.Huang. Cryo-Em Structure of Escherichia Coli Oppbcdf in the Resting State To Be Published.
Page generated: Fri Aug 8 01:51:55 2025

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