Iron in PDB 9bdj: Microed Structure of Bovine Liver Catalase with Missing Cone Eliminated By Suspended Drop

All present enzymatic activity of Microed Structure of Bovine Liver Catalase with Missing Cone Eliminated By Suspended Drop:
1.11.1.6;

The binding sites of Iron atom in the Microed Structure of Bovine Liver Catalase with Missing Cone Eliminated By Suspended Drop (pdb code 9bdj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Microed Structure of Bovine Liver Catalase with Missing Cone Eliminated By Suspended Drop, PDB code: 9bdj:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Microed Structure of Bovine Liver Catalase with Missing Cone Eliminated By Suspended Drop


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Microed Structure of Bovine Liver Catalase with Missing Cone Eliminated By Suspended Drop within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:24.1 occ:1.00 FE A:HEM601 0.0 24.1 1.0 ND A:HEM601 1.9 23.1 1.0 NA A:HEM601 2.0 23.2 1.0 NC A:HEM601 2.1 22.9 1.0 NB A:HEM601 2.1 24.4 1.0 OH A:TYR357 2.4 18.8 1.0 C4D A:HEM601 2.9 22.5 1.0 C1D A:HEM601 2.9 22.5 1.0 C1A A:HEM601 3.0 22.5 1.0 C4C A:HEM601 3.1 22.6 1.0 C4A A:HEM601 3.1 22.9 1.0 C4B A:HEM601 3.1 24.7 1.0 C1B A:HEM601 3.1 24.8 1.0 C1C A:HEM601 3.1 23.1 1.0 CHA A:HEM601 3.3 22.5 1.0 CHD A:HEM601 3.4 22.4 1.0 CZ A:TYR357 3.5 18.5 1.0 CHB A:HEM601 3.5 23.7 1.0 CHC A:HEM601 3.5 23.7 1.0 C3D A:HEM601 4.2 22.0 1.0 C2D A:HEM601 4.2 22.5 1.0 C2A A:HEM601 4.2 22.5 1.0 CE1 A:TYR357 4.2 18.5 1.0 C3A A:HEM601 4.2 22.6 1.0 NH2 A:ARG353 4.3 34.9 1.0 C3C A:HEM601 4.3 22.6 1.0 C2C A:HEM601 4.3 22.9 1.0 CE2 A:TYR357 4.3 18.6 1.0 C2B A:HEM601 4.4 25.5 1.0 CZ A:PHE160 4.4 32.3 1.0 C3B A:HEM601 4.4 26.0 1.0 NE A:ARG353 4.6 33.3 1.0 NE2 A:HIS74 4.6 37.5 1.0 CZ A:ARG353 4.7 34.4 1.0 CD2 A:HIS74 4.9 36.9 1.0 CG2 A:VAL73 4.9 38.4 1.0 CE1 A:PHE160 5.0 32.4 1.0 CE2 A:PHE160 5.0 32.2 1.0

Iron binding site 2 out of 4 in the Microed Structure of Bovine Liver Catalase with Missing Cone Eliminated By Suspended Drop


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Microed Structure of Bovine Liver Catalase with Missing Cone Eliminated By Suspended Drop within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:36.9 occ:1.00 FE B:HEM601 0.0 36.9 1.0 ND B:HEM601 1.9 38.4 1.0 NA B:HEM601 2.0 37.7 1.0 NC B:HEM601 2.1 39.1 1.0 NB B:HEM601 2.1 39.3 1.0 OH B:TYR357 2.4 30.8 1.0 C4D B:HEM601 2.9 37.4 1.0 C1D B:HEM601 2.9 40.1 1.0 C1A B:HEM601 3.0 37.7 1.0 C4C B:HEM601 3.1 39.9 1.0 C4A B:HEM601 3.1 38.6 1.0 C4B B:HEM601 3.1 40.8 1.0 C1B B:HEM601 3.1 39.0 1.0 C1C B:HEM601 3.1 40.7 1.0 CHA B:HEM601 3.3 37.5 1.0 CHD B:HEM601 3.4 41.4 1.0 CZ B:TYR357 3.5 30.4 1.0 CHB B:HEM601 3.5 39.1 1.0 CHC B:HEM601 3.5 41.5 1.0 CE1 B:TYR357 4.1 30.2 1.0 C3D B:HEM601 4.2 37.0 1.0 C2D B:HEM601 4.2 38.3 1.0 C2A B:HEM601 4.2 37.6 1.0 C3A B:HEM601 4.2 38.5 1.0 NH2 B:ARG353 4.3 21.4 1.0 C3C B:HEM601 4.3 39.8 1.0 CZ B:PHE160 4.3 23.7 1.0 C2C B:HEM601 4.3 41.1 1.0 C2B B:HEM601 4.4 38.2 1.0 CE2 B:TYR357 4.4 29.9 1.0 C3B B:HEM601 4.4 40.3 1.0 NE B:ARG353 4.4 22.3 1.0 CG2 B:VAL73 4.6 33.1 1.0 CZ B:ARG353 4.6 21.5 1.0 NE2 B:HIS74 4.7 36.3 1.0 CD2 B:HIS74 4.8 36.3 1.0 CE1 B:PHE160 4.9 23.5 1.0 CE2 B:PHE160 4.9 23.7 1.0

Iron binding site 3 out of 4 in the Microed Structure of Bovine Liver Catalase with Missing Cone Eliminated By Suspended Drop


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Microed Structure of Bovine Liver Catalase with Missing Cone Eliminated By Suspended Drop within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe601 b:54.9 occ:1.00 FE C:HEM601 0.0 54.9 1.0 ND C:HEM601 1.9 57.4 1.0 NA C:HEM601 2.0 54.9 1.0 NC C:HEM601 2.1 57.0 1.0 NB C:HEM601 2.1 52.6 1.0 OH C:TYR357 2.4 25.5 1.0 C4D C:HEM601 2.9 56.6 1.0 C1D C:HEM601 2.9 58.4 1.0 C1A C:HEM601 3.0 57.3 1.0 C4A C:HEM601 3.1 53.4 1.0 C4C C:HEM601 3.1 58.2 1.0 C1B C:HEM601 3.1 51.4 1.0 C4B C:HEM601 3.1 53.4 1.0 C1C C:HEM601 3.2 56.5 1.0 CHA C:HEM601 3.3 57.0 1.0 CHD C:HEM601 3.4 58.8 1.0 CHB C:HEM601 3.5 52.4 1.0 CZ C:TYR357 3.5 25.9 1.0 CHC C:HEM601 3.5 55.7 1.0 CZ C:PHE160 4.1 32.9 1.0 C2A C:HEM601 4.2 58.6 1.0 C2D C:HEM601 4.2 56.7 1.0 C3D C:HEM601 4.2 55.2 1.0 C3A C:HEM601 4.2 53.9 1.0 CE1 C:TYR357 4.3 25.9 1.0 C3C C:HEM601 4.3 58.4 1.0 CE2 C:TYR357 4.3 26.7 1.0 C2C C:HEM601 4.3 56.5 1.0 C2B C:HEM601 4.4 49.7 1.0 C3B C:HEM601 4.4 52.2 1.0 NH2 C:ARG353 4.5 26.1 1.0 CE1 C:PHE160 4.6 33.1 1.0 NE C:ARG353 4.6 24.7 1.0 CE2 C:PHE160 4.7 33.3 1.0 CD2 C:HIS74 4.8 37.2 1.0 NE2 C:HIS74 4.8 37.5 1.0 CZ C:ARG353 4.8 25.4 1.0

Iron binding site 4 out of 4 in the Microed Structure of Bovine Liver Catalase with Missing Cone Eliminated By Suspended Drop


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Microed Structure of Bovine Liver Catalase with Missing Cone Eliminated By Suspended Drop within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe601 b:51.9 occ:1.00 FE D:HEM601 0.0 51.9 1.0 ND D:HEM601 1.9 49.0 1.0 NA D:HEM601 2.0 49.4 1.0 NC D:HEM601 2.1 51.2 1.0 NB D:HEM601 2.1 51.4 1.0 OH D:TYR357 2.3 32.3 1.0 C1D D:HEM601 2.9 48.6 1.0 C4D D:HEM601 2.9 47.5 1.0 C1A D:HEM601 3.0 48.2 1.0 C4C D:HEM601 3.0 51.6 1.0 C4A D:HEM601 3.1 49.5 1.0 C4B D:HEM601 3.1 50.8 1.0 C1B D:HEM601 3.1 50.5 1.0 C1C D:HEM601 3.1 51.5 1.0 CZ D:TYR357 3.3 31.4 1.0 CHA D:HEM601 3.3 47.6 1.0 CHD D:HEM601 3.4 50.1 1.0 CHB D:HEM601 3.5 50.2 1.0 CHC D:HEM601 3.5 51.8 1.0 CE2 D:TYR357 4.1 29.8 1.0 C2D D:HEM601 4.2 48.0 1.0 C3D D:HEM601 4.2 45.8 1.0 CE1 D:TYR357 4.2 31.9 1.0 C2A D:HEM601 4.2 49.4 1.0 NH2 D:ARG353 4.2 22.9 1.0 CZ D:PHE160 4.2 42.3 1.0 C3A D:HEM601 4.2 48.5 1.0 C3C D:HEM601 4.3 53.9 1.0 C2C D:HEM601 4.3 51.7 1.0 C2B D:HEM601 4.4 49.7 1.0 C3B D:HEM601 4.4 50.6 1.0 NE D:ARG353 4.5 23.3 1.0 CG2 D:VAL73 4.5 45.1 1.0 CZ D:ARG353 4.7 22.9 1.0 NE2 D:HIS74 4.7 42.2 1.0 CD2 D:HIS74 4.8 42.3 1.0 CE2 D:PHE160 4.8 42.2 1.0 CE1 D:PHE160 4.9 42.7 1.0

C.Gillman, G.Bu, E.Danelius, J.Hattne, B.L.Nannenga, T.Gonen. Eliminating the Missing Cone Challenge Through Innovative Approaches To Be Published.